Wall clock time and date at job start Tue Mar 31 2020 08:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47117 * 2 1 4 4 C 1.53001 * 109.47064 * 119.99522 * 2 1 3 5 5 C 1.50703 * 109.47060 * 65.00341 * 4 2 1 6 6 C 1.38238 * 119.99990 * 89.99536 * 5 4 2 7 7 C 1.38232 * 119.99643 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.00706 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00662 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47037 * 89.99651 * 9 8 7 11 11 C 1.47439 * 111.00045 * 290.12992 * 10 9 8 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 O 1.42894 * 110.90261 * 277.37719 * 13 12 11 15 15 C 1.50696 * 111.02695 * 153.63025 * 13 12 11 16 16 H 1.07991 * 120.00591 * 247.60311 * 15 13 12 17 17 C 1.37885 * 119.99573 * 67.60648 * 15 13 12 18 18 N 1.31515 * 119.99698 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99798 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47012 * 60.00381 * 19 17 15 21 21 H 1.48504 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47355 * 300.00111 * 19 17 15 23 23 C 1.47843 * 110.99640 * 169.28284 * 10 9 8 24 24 C 1.38238 * 119.99695 * 0.27471 * 8 7 6 25 25 C 1.38232 * 120.00068 * 269.97875 * 5 4 2 26 26 H 1.09003 * 109.47501 * 300.00018 * 1 2 3 27 27 H 1.09003 * 109.47334 * 59.99829 * 1 2 3 28 28 H 1.09008 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47427 * 239.99571 * 2 1 3 30 30 H 1.09001 * 109.47098 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47059 * 299.99843 * 3 2 1 32 32 H 1.09003 * 109.46950 * 59.99644 * 3 2 1 33 33 H 1.08994 * 109.47815 * 305.00397 * 4 2 1 34 34 H 1.08999 * 109.46901 * 184.99639 * 4 2 1 35 35 H 1.07999 * 120.00040 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99797 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46848 * 330.00053 * 9 8 7 38 38 H 1.08996 * 109.46914 * 209.99969 * 9 8 7 39 39 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 40 40 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 41 41 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 42 42 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 43 43 H 0.96697 * 114.00262 * 292.32457 * 14 13 12 44 44 H 0.97001 * 119.99346 * 179.97438 * 18 17 15 45 45 H 1.08996 * 110.37823 * 265.19398 * 23 10 9 46 46 H 1.09002 * 110.37399 * 27.53914 * 23 10 9 47 47 H 1.07995 * 120.00520 * 179.73021 * 24 8 7 48 48 H 1.08000 * 119.99690 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1890 6 6 2.4814 -3.0966 0.5951 7 6 2.1160 -4.4286 0.5403 8 6 0.9108 -4.8375 1.0798 9 6 0.5126 -6.2897 1.0206 10 7 1.0034 -6.9813 2.2201 11 6 2.4726 -7.1025 2.1962 12 6 2.8132 -8.6026 2.3197 13 6 1.5347 -9.1960 2.9740 14 8 1.5586 -9.0191 4.3918 15 6 1.3700 -10.6507 2.6170 16 1 0.5515 -10.9624 1.9852 17 6 2.2643 -11.5839 3.0971 18 7 3.2613 -11.2043 3.8661 19 14 2.0597 -13.3873 2.6551 20 1 2.1319 -13.5468 1.1805 21 1 3.1430 -14.1789 3.2917 22 1 0.7421 -13.8698 3.1413 23 6 0.4209 -8.3360 2.3261 24 6 0.0683 -3.9134 1.6691 25 6 0.4357 -2.5820 1.7279 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6443 1.2952 35 1 3.4233 -2.7772 0.1740 36 1 2.7725 -5.1500 0.0767 37 1 0.9469 -6.7496 0.1328 38 1 -0.5737 -6.3670 0.9754 39 1 2.8618 -6.7099 1.2568 40 1 2.9035 -6.5542 3.0340 41 1 2.9816 -9.0417 1.3363 42 1 3.6815 -8.7490 2.9622 43 1 2.2398 -9.5375 4.8414 44 1 3.8902 -11.8608 4.2042 45 1 -0.4642 -8.3199 2.9620 46 1 0.1716 -8.7204 1.3371 47 1 -0.8753 -4.2320 2.0867 48 1 -0.2203 -1.8607 2.1924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:07 Heat of formation + Delta-G solvation = -58.709650 kcal Electronic energy + Delta-G solvation = -24754.658975 eV Core-core repulsion = 21386.564127 eV Total energy + Delta-G solvation = -3368.094848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81211 -39.77904 -37.40657 -36.31131 -34.11670 -33.25746 -31.80810 -31.00628 -29.87815 -28.27469 -27.93229 -26.40930 -24.96323 -23.59947 -22.14615 -21.40621 -21.31180 -20.75874 -19.09012 -17.14099 -16.97902 -16.92320 -16.62004 -16.12166 -16.09770 -15.72302 -15.36059 -15.13309 -14.65302 -14.40859 -14.28490 -14.09189 -13.94984 -13.62792 -13.32642 -13.15521 -13.06156 -12.94569 -12.90980 -12.74140 -12.62347 -12.48641 -12.31960 -12.27550 -12.04159 -11.89144 -11.67797 -11.58909 -11.45965 -11.41778 -11.13715 -10.60925 -10.08480 -9.71916 -9.40592 -9.12372 -8.23502 -6.39482 0.46932 0.58362 1.40825 1.42092 1.49896 2.36874 2.80151 3.00781 3.35897 3.79634 3.89315 3.94943 4.02688 4.06326 4.09652 4.15158 4.21372 4.26658 4.38940 4.41231 4.47699 4.60469 4.69083 4.70751 4.77654 4.81824 4.86036 4.88496 4.92187 5.00188 5.04867 5.10285 5.11174 5.19682 5.23534 5.27201 5.37332 5.46136 5.47498 5.51284 5.51945 5.58946 5.76581 5.79907 5.80749 5.96130 6.16896 6.21449 6.28162 6.66227 7.32417 7.50645 8.82049 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041252 B = 0.002572 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.589010 B =10884.409575 C =11025.384772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.087 4.087 9 C 0.087 3.913 10 N -0.526 5.526 11 C 0.059 3.941 12 C -0.140 4.140 13 C 0.235 3.765 14 O -0.592 6.592 15 C -0.562 4.562 16 H 0.058 0.942 17 C 0.028 3.972 18 N -0.915 5.915 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.273 1.273 23 C 0.065 3.935 24 C -0.110 4.110 25 C -0.119 4.119 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.375 0.625 44 H 0.270 0.730 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.123 0.877 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 21.262 -8.491 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.087 4.087 9 C -0.040 4.040 10 N -0.250 5.250 11 C -0.069 4.069 12 C -0.179 4.179 13 C 0.195 3.805 14 O -0.401 6.401 15 C -0.600 4.600 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.199 1.199 23 C -0.062 4.062 24 C -0.129 4.129 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.141 0.859 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.776 21.907 -8.108 23.524 hybrid contribution 0.808 -2.310 -0.560 2.510 sum -1.968 19.598 -8.669 21.519 Atomic orbital electron populations 1.21914 0.95200 1.01656 1.01957 1.21049 0.96106 0.96331 0.97215 1.21830 1.01164 0.95030 1.02187 1.20697 1.01501 0.89796 0.98955 1.20073 0.94345 0.96403 0.97595 1.21174 1.00275 0.92483 1.00332 1.21168 0.95926 0.96581 1.00367 1.19753 0.95436 0.94474 0.99057 1.21239 1.00675 0.91098 0.90987 1.63579 1.06203 1.17682 1.37566 1.22673 0.88224 0.95906 1.00055 1.23155 1.00566 0.94412 0.99786 1.19830 0.90186 0.91766 0.78762 1.86093 1.60850 1.71396 1.21718 1.21829 1.12585 0.93458 1.32108 0.92409 1.25744 0.94041 1.03303 0.94171 1.69673 1.15411 1.35999 1.34370 0.85542 0.77825 0.79277 0.78552 1.19617 1.20591 1.19860 1.22871 0.97721 0.87094 0.98515 1.21144 0.99964 0.93306 0.98448 1.21194 0.96835 0.95430 1.00212 0.92167 0.92535 0.93236 0.91881 0.92341 0.92289 0.92227 0.90429 0.90504 0.84792 0.86438 0.94114 0.89639 0.92109 0.92809 0.93360 0.92995 0.77449 0.92023 0.91743 0.92859 0.85868 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.77 71.98 0.63 -1.46 16 2 C -0.09 -1.22 2.91 -10.79 -0.03 -1.25 16 3 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 4 C -0.07 -1.12 4.84 29.85 0.14 -0.97 16 5 C -0.08 -1.75 4.71 -19.86 -0.09 -1.85 16 6 C -0.12 -2.84 9.70 22.27 0.22 -2.63 16 7 C -0.12 -3.25 8.74 22.27 0.19 -3.05 16 8 C -0.09 -2.50 5.11 -19.87 -0.10 -2.60 16 9 C 0.09 2.79 4.75 85.56 0.41 3.19 16 10 N -0.53 -20.80 5.15 -890.07 -4.58 -25.39 16 11 C 0.06 2.39 6.25 86.65 0.54 2.93 16 12 C -0.14 -6.66 5.65 31.87 0.18 -6.48 16 13 C 0.23 12.04 0.89 -10.06 -0.01 12.03 16 14 O -0.59 -32.75 13.18 -148.98 -1.96 -34.71 16 15 C -0.56 -30.55 8.25 25.60 0.21 -30.34 16 16 H 0.06 3.09 7.77 -2.92 -0.02 3.07 16 17 C 0.03 1.47 5.29 84.66 0.45 1.92 16 18 N -0.91 -49.79 10.78 21.45 0.23 -49.56 16 19 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.07 2.90 5.86 86.78 0.51 3.41 16 24 C -0.11 -2.89 9.70 22.27 0.22 -2.67 16 25 C -0.12 -2.64 7.96 22.27 0.18 -2.46 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.82 6.27 -2.38 -0.01 0.80 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.08 16 35 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.12 3.04 6.91 -2.91 -0.02 3.02 16 37 H 0.04 1.28 7.90 -2.39 -0.02 1.26 16 38 H 0.09 2.52 8.01 -2.39 -0.02 2.50 16 39 H 0.06 2.16 5.50 -2.39 -0.01 2.14 16 40 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 2.30 8.04 -2.38 -0.02 2.28 16 42 H 0.05 2.65 7.84 -2.39 -0.02 2.63 16 43 H 0.38 21.22 6.93 -74.06 -0.51 20.71 16 44 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.05 2.24 7.68 -2.39 -0.02 2.23 16 47 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 48 H 0.14 2.43 8.04 -2.91 -0.02 2.40 16 Total: -1.00 -59.14 375.18 0.42 -58.71 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.41 Total: 39.75 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.30 Total: -33.19 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -4.35 Total: -74.95 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.96 Total: -34.71 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.14 0.42 -58.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.005 kcal (2) G-P(sol) polarization free energy of solvation -59.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds