Wall clock time and date at job start Tue Mar 31 2020 08:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46927 * 119.99687 * 2 1 3 5 5 C 1.38242 * 119.99919 * 119.99850 * 4 2 1 6 6 C 1.38236 * 119.99930 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99969 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99704 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47100 * 89.99870 * 8 7 6 10 10 N 1.46899 * 109.46867 * 179.97438 * 9 8 7 11 11 C 1.48535 * 111.00098 * 287.39520 * 10 9 8 12 12 C 1.55103 * 103.28125 * 200.33413 * 11 10 9 13 13 C 1.54601 * 102.84538 * 37.30582 * 12 11 10 14 14 O 1.42899 * 110.30773 * 97.11731 * 13 12 11 15 15 C 1.50700 * 110.30664 * 219.18372 * 13 12 11 16 16 H 1.07999 * 119.99988 * 117.20955 * 15 13 12 17 17 C 1.37885 * 120.00047 * 297.21135 * 15 13 12 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.47908 * 110.99869 * 169.99687 * 10 9 8 24 24 C 1.38231 * 119.99941 * 0.27060 * 7 6 5 25 25 C 1.38233 * 120.00548 * 359.51668 * 24 7 6 26 26 H 1.08994 * 109.47381 * 300.00199 * 1 2 3 27 27 H 1.09005 * 109.46398 * 60.00333 * 1 2 3 28 28 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47381 * 239.99801 * 2 1 3 30 30 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47369 * 299.99308 * 3 2 1 32 32 H 1.09001 * 109.47018 * 60.00062 * 3 2 1 33 33 H 1.07999 * 119.99731 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.99789 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47006 * 329.99634 * 8 7 6 36 36 H 1.09001 * 109.46529 * 209.99415 * 8 7 6 37 37 H 1.08997 * 109.47170 * 59.99486 * 9 8 7 38 38 H 1.08999 * 109.46733 * 299.99927 * 9 8 7 39 39 H 1.08996 * 110.66618 * 318.71599 * 11 10 9 40 40 H 1.08994 * 110.66413 * 81.67735 * 11 10 9 41 41 H 1.09003 * 110.70696 * 278.99712 * 12 11 10 42 42 H 1.09005 * 110.80877 * 155.66092 * 12 11 10 43 43 H 0.96699 * 114.00025 * 62.78843 * 14 13 12 44 44 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.91016 * 26.49117 * 23 10 9 46 46 H 1.08993 * 109.91789 * 265.20266 * 23 10 9 47 47 H 1.08007 * 119.99765 * 179.73058 * 24 7 6 48 48 H 1.07995 * 120.00550 * 180.27282 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2882 -2.4857 2.2325 7 6 2.9551 -2.0127 3.4880 8 6 3.4584 -2.7224 4.7184 9 6 4.8065 -2.1297 5.1335 10 7 5.2968 -2.8212 6.3333 11 6 4.5126 -2.4281 7.5320 12 6 5.4523 -2.7976 8.7094 13 6 6.8513 -2.4379 8.1586 14 8 7.2439 -1.1406 8.6110 15 6 7.8632 -3.4689 8.5876 16 1 8.3748 -4.0647 7.8461 17 6 8.1360 -3.6517 9.9268 18 7 7.5170 -2.9224 10.8294 19 14 9.3908 -4.9291 10.4585 20 1 10.7362 -4.3039 10.5246 21 1 9.0237 -5.4564 11.7973 22 1 9.4102 -6.0428 9.4762 23 6 6.6970 -2.4457 6.6265 24 6 2.1563 -0.8917 3.6147 25 6 1.6987 -0.2378 2.4861 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0876 -2.2036 0.1228 34 1 3.9088 -3.3640 2.1334 35 1 3.5793 -3.7838 4.5018 36 1 2.7410 -2.5965 5.5294 37 1 4.6856 -1.0683 5.3501 38 1 5.5239 -2.2556 4.3225 39 1 4.3099 -1.3572 7.5249 40 1 3.5827 -2.9940 7.5859 41 1 5.3882 -3.8623 8.9341 42 1 5.2202 -2.2014 9.5919 43 1 7.3359 -1.0700 9.5710 44 1 7.7086 -3.0513 11.7715 45 1 6.9067 -1.4534 6.2271 46 1 7.3769 -3.1764 6.1885 47 1 1.8925 -0.5247 4.5956 48 1 1.0782 0.6406 2.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:30 Heat of formation + Delta-G solvation = -45.199693 kcal Electronic energy + Delta-G solvation = -24410.571190 eV Core-core repulsion = 21043.062177 eV Total energy + Delta-G solvation = -3367.509012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.80603 -38.37050 -36.17448 -34.84095 -32.33890 -32.05886 -30.96762 -29.60930 -28.09102 -27.42172 -27.01525 -24.50830 -23.29040 -22.69273 -21.58551 -20.15721 -19.90216 -19.33599 -17.05999 -16.53284 -15.71869 -15.43154 -14.97816 -14.87909 -14.53980 -14.18666 -14.02624 -13.81096 -13.76373 -13.66125 -13.33849 -12.84528 -12.60911 -12.49481 -12.26405 -12.03848 -11.90712 -11.69271 -11.44597 -11.39299 -11.26849 -11.06634 -10.92419 -10.82023 -10.73222 -10.64106 -10.44357 -10.34365 -10.22804 -9.89926 -9.12788 -8.94401 -8.56939 -8.48820 -8.07844 -7.75451 -6.16778 -4.22609 1.30148 1.37916 3.25988 3.32826 3.36961 3.69536 4.34679 4.43053 4.54406 4.58120 4.90321 4.92585 4.97449 5.09121 5.13353 5.18018 5.29433 5.33277 5.42487 5.43925 5.53933 5.55819 5.64361 5.69682 5.74138 5.84062 5.92238 5.93446 5.95457 6.02849 6.08041 6.12144 6.21789 6.27913 6.31516 6.41491 6.50135 6.54605 6.55910 6.70262 6.96726 6.99191 7.09561 7.33194 7.55678 7.70013 7.75847 7.88204 8.20329 8.79021 9.43914 9.54535 10.90933 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037031 B = 0.002391 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.937385 B =11705.541287 C =11836.945425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.076 4.076 8 C -0.075 4.075 9 C 0.055 3.945 10 N -0.515 5.515 11 C 0.031 3.969 12 C -0.117 4.117 13 C 0.242 3.758 14 O -0.595 6.595 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.055 3.945 24 C -0.115 4.115 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.382 0.618 44 H 0.266 0.734 45 H 0.034 0.966 46 H 0.078 0.922 47 H 0.120 0.880 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 4.892 -17.809 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.087 4.087 5 C -0.136 4.136 6 C -0.131 4.131 7 C -0.077 4.077 8 C -0.113 4.113 9 C -0.074 4.074 10 N -0.239 5.239 11 C -0.097 4.097 12 C -0.156 4.156 13 C 0.202 3.798 14 O -0.405 6.405 15 C -0.565 4.565 16 H 0.080 0.920 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.133 4.133 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.233 0.767 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.294 4.492 -18.366 23.114 hybrid contribution 0.732 0.059 1.148 1.363 sum -12.562 4.551 -17.218 21.794 Atomic orbital electron populations 1.21855 0.94476 1.01957 1.01800 1.20106 0.95839 0.96019 0.95469 1.21860 1.01346 0.95158 1.01799 1.19800 0.98386 0.96022 0.94517 1.21016 0.98384 0.95726 0.98425 1.21076 0.99970 1.00190 0.91903 1.19979 0.96917 0.95708 0.95053 1.20573 0.96800 0.99847 0.94096 1.22182 0.95427 0.95529 0.94222 1.64760 1.03331 1.53697 1.02161 1.23352 0.97254 0.97270 0.91826 1.22995 0.95919 1.01494 0.95148 1.19368 0.90985 0.81732 0.87705 1.86093 1.91765 1.33630 1.28998 1.21698 1.23015 1.19507 0.92246 0.92010 1.25021 0.95865 0.96022 0.96540 1.69660 1.42386 1.40576 1.01411 0.86463 0.81377 0.81521 0.77872 1.20589 1.21169 1.19763 1.22832 0.88448 0.98262 0.97695 1.21072 0.98108 0.95549 0.98555 1.20909 1.00465 0.99847 0.91949 0.92459 0.92545 0.92571 0.90669 0.92484 0.92533 0.92447 0.86413 0.85977 0.90233 0.91110 0.95083 0.91391 0.94984 0.91776 0.91408 0.91741 0.76686 0.92418 0.94718 0.90365 0.86213 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.01 37.16 0.33 -0.67 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.06 9.01 37.16 0.33 -0.73 16 4 C -0.09 -0.88 4.78 -104.62 -0.50 -1.38 16 5 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 6 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 7 C -0.08 -0.95 5.13 -104.62 -0.54 -1.49 16 8 C -0.08 -1.03 5.44 -27.88 -0.15 -1.18 16 9 C 0.06 0.90 4.69 -3.82 -0.02 0.88 16 10 N -0.52 -10.11 5.25 -230.35 -1.21 -11.32 16 11 C 0.03 0.61 5.92 -1.81 -0.01 0.60 16 12 C -0.12 -2.75 5.42 -24.78 -0.13 -2.88 16 13 C 0.24 6.13 0.99 -90.42 -0.09 6.04 16 14 O -0.60 -15.83 12.92 -35.23 -0.46 -16.28 16 15 C -0.53 -14.34 8.11 -34.44 -0.28 -14.62 16 16 H 0.06 1.68 7.34 -52.49 -0.39 1.30 16 17 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 18 N -0.90 -24.30 10.88 55.43 0.60 -23.69 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 C 0.05 1.23 6.13 -2.76 -0.02 1.22 16 24 C -0.11 -1.36 9.70 -39.59 -0.38 -1.74 16 25 C -0.11 -1.20 8.71 -39.58 -0.34 -1.55 16 26 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 33 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.07 0.96 7.31 -51.93 -0.38 0.58 16 37 H 0.03 0.52 7.83 -51.93 -0.41 0.12 16 38 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.03 0.63 7.81 -51.93 -0.41 0.22 16 40 H 0.06 1.14 7.79 -51.93 -0.40 0.74 16 41 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 42 H 0.06 1.57 8.02 -51.93 -0.42 1.15 16 43 H 0.38 10.27 7.18 45.56 0.33 10.59 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.77 7.59 -51.93 -0.39 0.38 16 46 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 47 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.12 1.05 7.10 -52.49 -0.37 0.67 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -28.02 377.64 -11.07 -39.09 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.73 Total: 10.41 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.94 Total: -19.84 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: -0.61 Total: -35.01 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.46 Total: -16.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.02 -11.07 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.109 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds