Wall clock time and date at job start Tue Mar 31 2020 08:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46927 * 119.99687 * 2 1 3 5 5 C 1.38242 * 119.99919 * 119.99850 * 4 2 1 6 6 C 1.38236 * 119.99930 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99969 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99704 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47100 * 89.99870 * 8 7 6 10 10 N 1.46899 * 109.46867 * 179.97438 * 9 8 7 11 11 C 1.48535 * 111.00098 * 287.39520 * 10 9 8 12 12 C 1.55103 * 103.28125 * 200.33413 * 11 10 9 13 13 C 1.54601 * 102.84538 * 37.30582 * 12 11 10 14 14 O 1.42899 * 110.30773 * 97.11731 * 13 12 11 15 15 C 1.50700 * 110.30664 * 219.18372 * 13 12 11 16 16 H 1.07999 * 119.99988 * 117.20955 * 15 13 12 17 17 C 1.37885 * 120.00047 * 297.21135 * 15 13 12 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.47908 * 110.99869 * 169.99687 * 10 9 8 24 24 C 1.38231 * 119.99941 * 0.27060 * 7 6 5 25 25 C 1.38233 * 120.00548 * 359.51668 * 24 7 6 26 26 H 1.08994 * 109.47381 * 300.00199 * 1 2 3 27 27 H 1.09005 * 109.46398 * 60.00333 * 1 2 3 28 28 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47381 * 239.99801 * 2 1 3 30 30 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47369 * 299.99308 * 3 2 1 32 32 H 1.09001 * 109.47018 * 60.00062 * 3 2 1 33 33 H 1.07999 * 119.99731 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.99789 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47006 * 329.99634 * 8 7 6 36 36 H 1.09001 * 109.46529 * 209.99415 * 8 7 6 37 37 H 1.08997 * 109.47170 * 59.99486 * 9 8 7 38 38 H 1.08999 * 109.46733 * 299.99927 * 9 8 7 39 39 H 1.08996 * 110.66618 * 318.71599 * 11 10 9 40 40 H 1.08994 * 110.66413 * 81.67735 * 11 10 9 41 41 H 1.09003 * 110.70696 * 278.99712 * 12 11 10 42 42 H 1.09005 * 110.80877 * 155.66092 * 12 11 10 43 43 H 0.96699 * 114.00025 * 62.78843 * 14 13 12 44 44 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.91016 * 26.49117 * 23 10 9 46 46 H 1.08993 * 109.91789 * 265.20266 * 23 10 9 47 47 H 1.08007 * 119.99765 * 179.73058 * 24 7 6 48 48 H 1.07995 * 120.00550 * 180.27282 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2882 -2.4857 2.2325 7 6 2.9551 -2.0127 3.4880 8 6 3.4584 -2.7224 4.7184 9 6 4.8065 -2.1297 5.1335 10 7 5.2968 -2.8212 6.3333 11 6 4.5126 -2.4281 7.5320 12 6 5.4523 -2.7976 8.7094 13 6 6.8513 -2.4379 8.1586 14 8 7.2439 -1.1406 8.6110 15 6 7.8632 -3.4689 8.5876 16 1 8.3748 -4.0647 7.8461 17 6 8.1360 -3.6517 9.9268 18 7 7.5170 -2.9224 10.8294 19 14 9.3908 -4.9291 10.4585 20 1 10.7362 -4.3039 10.5246 21 1 9.0237 -5.4564 11.7973 22 1 9.4102 -6.0428 9.4762 23 6 6.6970 -2.4457 6.6265 24 6 2.1563 -0.8917 3.6147 25 6 1.6987 -0.2378 2.4861 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0876 -2.2036 0.1228 34 1 3.9088 -3.3640 2.1334 35 1 3.5793 -3.7838 4.5018 36 1 2.7410 -2.5965 5.5294 37 1 4.6856 -1.0683 5.3501 38 1 5.5239 -2.2556 4.3225 39 1 4.3099 -1.3572 7.5249 40 1 3.5827 -2.9940 7.5859 41 1 5.3882 -3.8623 8.9341 42 1 5.2202 -2.2014 9.5919 43 1 7.3359 -1.0700 9.5710 44 1 7.7086 -3.0513 11.7715 45 1 6.9067 -1.4534 6.2271 46 1 7.3769 -3.1764 6.1885 47 1 1.8925 -0.5247 4.5956 48 1 1.0782 0.6406 2.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:29 Heat of formation + Delta-G solvation = -60.631658 kcal Electronic energy + Delta-G solvation = -24411.240370 eV Core-core repulsion = 21043.062177 eV Total energy + Delta-G solvation = -3368.178193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69287 -40.02922 -37.29037 -36.29118 -34.14699 -33.55615 -31.80231 -31.02995 -29.87973 -28.35775 -27.96197 -26.27522 -24.45087 -23.64108 -22.67965 -21.58791 -21.26589 -20.71398 -19.10755 -17.41420 -16.93563 -16.89899 -16.56266 -16.22030 -15.92506 -15.65913 -15.34060 -14.86583 -14.60766 -14.50627 -14.25201 -14.08305 -14.04896 -13.84243 -13.68592 -13.26364 -13.21214 -12.97727 -12.89226 -12.62132 -12.53009 -12.44270 -12.28978 -12.17022 -12.05989 -11.97045 -11.84437 -11.69256 -11.47965 -11.44708 -11.06580 -10.60612 -10.10995 -9.78245 -9.40958 -9.32266 -8.21223 -6.34779 0.44720 0.54134 1.40841 1.42532 1.52547 2.39633 2.81015 3.00311 3.14697 3.76967 3.85736 3.89563 4.01368 4.09810 4.13866 4.19985 4.30487 4.33056 4.34867 4.41149 4.52654 4.56340 4.60342 4.63111 4.65674 4.68268 4.81837 4.82334 4.94186 4.99397 5.01018 5.07059 5.09903 5.16802 5.23098 5.24014 5.30659 5.36868 5.40305 5.41885 5.58353 5.60354 5.76817 5.77959 5.79498 5.97377 6.15027 6.16414 6.23209 6.69477 7.34582 7.43451 8.84930 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037031 B = 0.002391 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.937385 B =11705.541287 C =11836.945425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.063 4.063 9 C 0.059 3.941 10 N -0.516 5.516 11 C 0.042 3.958 12 C -0.109 4.109 13 C 0.225 3.775 14 O -0.603 6.603 15 C -0.553 4.553 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.271 1.271 23 C 0.062 3.938 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.377 0.623 44 H 0.269 0.731 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.123 0.877 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 4.845 -19.336 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.093 4.093 8 C -0.101 4.101 9 C -0.069 4.069 10 N -0.241 5.241 11 C -0.085 4.085 12 C -0.148 4.148 13 C 0.185 3.815 14 O -0.412 6.412 15 C -0.591 4.591 16 H 0.072 0.928 17 C -0.174 4.174 18 N -0.555 5.555 19 Si 0.786 3.214 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.196 1.196 23 C -0.066 4.066 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.227 0.773 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.141 0.859 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.245 4.449 -19.907 24.880 hybrid contribution 1.007 0.120 1.576 1.875 sum -13.238 4.569 -18.330 23.067 Atomic orbital electron populations 1.21841 0.93687 1.01902 1.02469 1.20163 0.96441 0.96111 0.94673 1.21853 1.00809 0.94928 1.02471 1.20124 0.97558 0.95752 0.95261 1.21292 0.98166 0.95766 0.98991 1.21244 1.00170 1.00613 0.91989 1.19907 0.98163 0.96431 0.94836 1.20416 0.95089 0.99785 0.94791 1.22231 0.96948 0.95107 0.92650 1.64766 1.01831 1.54289 1.03167 1.23265 0.97252 0.97843 0.90183 1.22778 0.96149 0.99863 0.96045 1.19644 0.91478 0.80822 0.89543 1.86086 1.92001 1.34557 1.28583 1.21939 1.24081 1.20403 0.92676 0.92816 1.25715 0.97445 0.97741 0.96492 1.69738 1.42931 1.41220 1.01609 0.85518 0.79096 0.79232 0.77534 1.20281 1.20496 1.19582 1.22673 0.90334 0.97920 0.95681 1.21220 0.98315 0.95615 0.99280 1.21120 1.00502 1.00237 0.91852 0.92576 0.91143 0.92985 0.89840 0.93308 0.91068 0.92627 0.84546 0.85328 0.90181 0.91027 0.95559 0.91053 0.94646 0.89228 0.93291 0.93219 0.77286 0.92179 0.95063 0.90873 0.85899 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.01 71.98 0.65 -1.01 16 2 C -0.06 -0.75 3.09 -11.54 -0.04 -0.78 16 3 C -0.14 -1.81 9.01 71.98 0.65 -1.16 16 4 C -0.09 -1.59 4.78 -19.86 -0.09 -1.69 16 5 C -0.12 -2.38 9.67 22.27 0.22 -2.17 16 6 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 7 C -0.09 -2.22 5.13 -19.87 -0.10 -2.32 16 8 C -0.06 -1.64 5.44 29.85 0.16 -1.48 16 9 C 0.06 1.85 4.69 86.30 0.40 2.26 16 10 N -0.52 -19.93 5.25 -882.69 -4.63 -24.56 16 11 C 0.04 1.63 5.92 86.71 0.51 2.15 16 12 C -0.11 -5.21 5.42 31.86 0.17 -5.04 16 13 C 0.22 11.56 0.99 -10.66 -0.01 11.54 16 14 O -0.60 -32.68 12.92 -148.98 -1.93 -34.61 16 15 C -0.55 -30.56 8.11 25.60 0.21 -30.36 16 16 H 0.05 2.97 7.34 -2.91 -0.02 2.95 16 17 C 0.03 1.40 5.26 84.66 0.45 1.84 16 18 N -0.91 -49.80 10.88 21.45 0.23 -49.57 16 19 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.06 2.79 6.13 86.44 0.53 3.32 16 24 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 25 C -0.12 -2.34 8.71 22.27 0.19 -2.14 16 26 H 0.06 0.67 7.39 -2.39 -0.02 0.65 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.72 7.39 -2.39 -0.02 0.70 16 33 H 0.14 2.02 7.95 -2.91 -0.02 2.00 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.07 1.83 7.31 -2.39 -0.02 1.82 16 37 H 0.03 0.86 7.83 -2.39 -0.02 0.84 16 38 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 39 H 0.04 1.35 7.81 -2.39 -0.02 1.34 16 40 H 0.09 3.03 7.79 -2.39 -0.02 3.01 16 41 H 0.05 2.47 7.86 -2.39 -0.02 2.45 16 42 H 0.05 2.46 8.02 -2.38 -0.02 2.44 16 43 H 0.38 20.77 7.18 -74.06 -0.53 20.24 16 44 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.03 1.40 7.59 -2.39 -0.02 1.38 16 46 H 0.07 3.33 7.39 -2.39 -0.02 3.31 16 47 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 48 H 0.13 2.12 7.10 -2.91 -0.02 2.10 16 Total: -1.00 -59.21 377.64 0.42 -58.79 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.39 Total: 36.98 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.33 Total: -32.10 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -4.40 Total: -74.13 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.93 Total: -34.61 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -59.21 0.42 -58.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.846 kcal (2) G-P(sol) polarization free energy of solvation -59.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds