Wall clock time and date at job start Tue Mar 31 2020 08:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46775 * 2 1 4 4 C 1.50704 * 109.46606 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99757 * 90.00636 * 4 3 2 6 6 C 1.38234 * 119.99885 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00013 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47039 * 90.00141 * 8 7 6 10 10 C 1.53002 * 109.47077 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47061 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00052 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00108 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00234 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47164 * 35.00287 * 14 13 11 16 16 C 1.53006 * 109.47363 * 275.00260 * 14 13 11 17 17 C 1.50698 * 109.47354 * 154.99895 * 14 13 11 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46790 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47548 * 120.00188 * 21 19 17 24 24 H 1.48504 * 109.47233 * 240.00380 * 21 19 17 25 25 C 1.38238 * 119.99724 * 0.25631 * 7 6 5 26 26 C 1.38231 * 120.00221 * 270.02154 * 4 3 2 27 27 H 1.08993 * 109.46867 * 299.99832 * 1 2 3 28 28 H 1.09000 * 109.46829 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46777 * 240.00592 * 2 1 3 31 31 H 1.09000 * 109.46829 * 120.00138 * 2 1 3 32 32 H 1.09000 * 109.46984 * 60.00719 * 3 2 1 33 33 H 1.08991 * 109.47539 * 299.99924 * 3 2 1 34 34 H 1.07998 * 120.00226 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.99974 * 179.97438 * 6 5 4 36 36 H 1.08991 * 109.47404 * 329.99963 * 8 7 6 37 37 H 1.09002 * 109.46922 * 209.99513 * 8 7 6 38 38 H 1.09007 * 109.47408 * 59.99955 * 9 8 7 39 39 H 1.08995 * 109.47422 * 299.99991 * 9 8 7 40 40 H 1.08997 * 109.47035 * 60.00394 * 10 9 8 41 41 H 1.08993 * 109.47358 * 299.99643 * 10 9 8 42 42 H 0.97005 * 119.99613 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46801 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.46998 * 299.99569 * 16 14 13 45 45 H 1.09000 * 109.47050 * 59.99860 * 16 14 13 46 46 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 47 47 H 1.08000 * 120.00006 * 179.72734 * 25 7 6 48 48 H 1.08009 * 120.00010 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4429 -1.1957 7 6 6.3118 1.4429 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0025 10 6 9.8588 2.8853 0.0037 11 6 10.3611 4.3061 0.0032 12 8 9.5730 5.2280 0.0025 13 7 11.6862 4.5524 0.0036 14 6 12.1746 5.9336 0.0026 15 1 11.5018 6.5573 0.5912 16 6 12.2267 6.4551 -1.4349 17 6 13.5558 5.9785 0.6036 18 1 14.0233 5.0691 0.9512 19 6 14.2231 7.1804 0.7089 20 7 13.6541 8.2878 0.2851 21 14 15.9355 7.2359 1.4532 22 1 16.3479 5.8653 1.8487 23 1 16.8932 7.7712 0.4526 24 1 15.9268 8.1153 2.6499 25 6 5.6201 1.4371 1.1986 26 6 4.2377 1.4422 1.1980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.6991 1.4420 -2.1318 35 1 6.1614 1.4424 -2.1308 36 1 8.1824 0.9291 -0.8875 37 1 8.1817 0.9291 0.8925 38 1 7.9651 3.3993 0.8923 39 1 7.9658 3.3992 -0.8876 40 1 10.2228 2.3714 -0.8860 41 1 10.2214 2.3717 0.8940 42 1 12.3165 3.8151 0.0038 43 1 12.5896 7.4829 -1.4355 44 1 12.8995 5.8314 -2.0235 45 1 11.2276 6.4226 -1.8696 46 1 14.1234 9.1334 0.3595 47 1 6.1597 1.4327 2.1341 48 1 3.6973 1.4416 2.1332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592755662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:24 Heat of formation + Delta-G solvation = -59.749510 kcal Electronic energy + Delta-G solvation = -23248.929579 eV Core-core repulsion = 19880.789639 eV Total energy + Delta-G solvation = -3368.139940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73866 -38.83989 -36.07198 -34.87101 -34.05262 -32.34500 -31.31676 -31.01838 -29.16804 -27.79207 -25.39256 -25.19029 -22.83766 -22.68898 -21.69983 -20.69848 -20.40721 -19.30025 -17.13021 -16.27162 -16.11576 -15.60328 -15.36236 -15.28190 -15.06804 -14.65129 -14.17830 -13.98152 -13.69724 -13.56984 -13.34639 -13.15755 -12.77852 -12.48825 -12.40579 -12.31152 -11.91778 -11.73310 -11.55921 -11.39708 -11.26174 -11.20656 -11.05961 -10.93699 -10.90570 -10.81468 -10.67508 -10.52830 -10.28218 -10.22523 -9.02098 -9.00569 -8.94031 -8.56195 -8.52916 -7.85469 -6.10890 -4.20067 1.23213 1.31866 3.24110 3.31762 3.34516 3.48652 3.61969 4.15978 4.40180 4.48564 4.56224 4.74659 4.76978 4.79302 4.92119 5.04614 5.12245 5.20995 5.23987 5.28550 5.33148 5.38145 5.45970 5.47371 5.49746 5.63301 5.64585 5.73837 5.79153 5.79539 5.91588 5.95320 5.98361 6.05177 6.25597 6.33911 6.49343 6.49948 6.59948 6.85224 6.92851 6.99573 7.18352 7.51188 7.60041 7.72305 7.94615 8.17625 8.72423 8.81333 9.20221 9.48023 10.95154 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041349 B = 0.001872 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.002471 B =14952.844983 C =15042.680942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.092 4.092 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.082 4.082 9 C -0.095 4.095 10 C -0.142 4.142 11 C 0.498 3.502 12 O -0.558 6.558 13 N -0.712 5.712 14 C 0.262 3.738 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.114 4.114 26 C -0.116 4.116 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.388 0.612 43 H 0.089 0.911 44 H 0.025 0.975 45 H 0.014 0.986 46 H 0.263 0.737 47 H 0.121 0.879 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 -18.339 -1.263 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.183 4.183 11 C 0.283 3.717 12 O -0.437 6.437 13 N -0.360 5.360 14 C 0.160 3.840 15 H 0.065 0.935 16 C -0.205 4.205 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.132 4.132 26 C -0.134 4.134 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.220 0.780 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.139 0.861 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.215 -17.445 -1.277 26.732 hybrid contribution 1.356 -0.205 0.356 1.417 sum -18.859 -17.649 -0.921 25.846 Atomic orbital electron populations 1.21797 0.95758 1.01647 1.01861 1.21512 0.95560 0.96194 1.02339 1.20621 0.91073 0.97233 1.02814 1.19843 0.95477 1.00581 0.93277 1.20987 0.94151 1.00882 0.97403 1.21051 0.94091 1.00360 0.97715 1.19920 0.95855 0.98953 0.93125 1.20678 0.90635 0.97853 1.02800 1.21273 0.93379 0.94762 1.03893 1.21703 0.97206 0.95710 1.03635 1.20519 0.83323 0.90755 0.77097 1.90651 1.55522 1.46516 1.51015 1.46545 1.05623 1.11342 1.72461 1.18729 0.94417 0.76926 0.93904 0.93463 1.22070 0.97102 1.03878 0.97445 1.21272 1.00455 0.94156 1.41206 0.92059 1.24903 0.98292 0.95398 0.95213 1.69920 1.37716 0.98512 1.45979 0.86395 0.83709 0.78130 0.78860 1.19751 1.20889 1.20885 1.21058 0.94088 1.00326 0.97734 1.20990 0.94160 1.00857 0.97403 0.92697 0.92707 0.92733 0.91917 0.91912 0.91131 0.91132 0.86378 0.86102 0.91021 0.90997 0.91145 0.91181 0.89623 0.89548 0.77997 0.89215 0.95537 0.96699 0.92660 0.86079 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 3 C -0.08 -0.60 5.34 -27.88 -0.15 -0.74 16 4 C -0.09 -0.88 5.13 -104.62 -0.54 -1.42 16 5 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 6 C -0.11 -1.21 9.70 -39.58 -0.38 -1.60 16 7 C -0.08 -0.87 5.13 -104.62 -0.54 -1.40 16 8 C -0.08 -0.85 5.35 -27.89 -0.15 -1.00 16 9 C -0.10 -1.27 4.49 -26.73 -0.12 -1.39 16 10 C -0.14 -1.96 5.70 -27.88 -0.16 -2.12 16 11 C 0.50 9.96 7.79 -10.98 -0.09 9.88 16 12 O -0.56 -13.60 15.64 5.55 0.09 -13.52 16 13 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 14 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 15 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 16 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 17 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 21 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 26 C -0.12 -1.15 9.70 -39.59 -0.38 -1.54 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 43 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -31.59 394.60 -10.54 -42.13 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.62 Total: 5.08 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.29 Total: -15.54 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.35 Total: -39.86 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.59 -10.54 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.616 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds