Wall clock time and date at job start Tue Mar 31 2020 08:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46775 * 2 1 4 4 C 1.50704 * 109.46606 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99757 * 90.00636 * 4 3 2 6 6 C 1.38234 * 119.99885 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00013 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47039 * 90.00141 * 8 7 6 10 10 C 1.53002 * 109.47077 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47061 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00052 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00108 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00234 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47164 * 35.00287 * 14 13 11 16 16 C 1.53006 * 109.47363 * 275.00260 * 14 13 11 17 17 C 1.50698 * 109.47354 * 154.99895 * 14 13 11 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46790 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47548 * 120.00188 * 21 19 17 24 24 H 1.48504 * 109.47233 * 240.00380 * 21 19 17 25 25 C 1.38238 * 119.99724 * 0.25631 * 7 6 5 26 26 C 1.38231 * 120.00221 * 270.02154 * 4 3 2 27 27 H 1.08993 * 109.46867 * 299.99832 * 1 2 3 28 28 H 1.09000 * 109.46829 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46777 * 240.00592 * 2 1 3 31 31 H 1.09000 * 109.46829 * 120.00138 * 2 1 3 32 32 H 1.09000 * 109.46984 * 60.00719 * 3 2 1 33 33 H 1.08991 * 109.47539 * 299.99924 * 3 2 1 34 34 H 1.07998 * 120.00226 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.99974 * 179.97438 * 6 5 4 36 36 H 1.08991 * 109.47404 * 329.99963 * 8 7 6 37 37 H 1.09002 * 109.46922 * 209.99513 * 8 7 6 38 38 H 1.09007 * 109.47408 * 59.99955 * 9 8 7 39 39 H 1.08995 * 109.47422 * 299.99991 * 9 8 7 40 40 H 1.08997 * 109.47035 * 60.00394 * 10 9 8 41 41 H 1.08993 * 109.47358 * 299.99643 * 10 9 8 42 42 H 0.97005 * 119.99613 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46801 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.46998 * 299.99569 * 16 14 13 45 45 H 1.09000 * 109.47050 * 59.99860 * 16 14 13 46 46 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 47 47 H 1.08000 * 120.00006 * 179.72734 * 25 7 6 48 48 H 1.08009 * 120.00010 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4429 -1.1957 7 6 6.3118 1.4429 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0025 10 6 9.8588 2.8853 0.0037 11 6 10.3611 4.3061 0.0032 12 8 9.5730 5.2280 0.0025 13 7 11.6862 4.5524 0.0036 14 6 12.1746 5.9336 0.0026 15 1 11.5018 6.5573 0.5912 16 6 12.2267 6.4551 -1.4349 17 6 13.5558 5.9785 0.6036 18 1 14.0233 5.0691 0.9512 19 6 14.2231 7.1804 0.7089 20 7 13.6541 8.2878 0.2851 21 14 15.9355 7.2359 1.4532 22 1 16.3479 5.8653 1.8487 23 1 16.8932 7.7712 0.4526 24 1 15.9268 8.1153 2.6499 25 6 5.6201 1.4371 1.1986 26 6 4.2377 1.4422 1.1980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.6991 1.4420 -2.1318 35 1 6.1614 1.4424 -2.1308 36 1 8.1824 0.9291 -0.8875 37 1 8.1817 0.9291 0.8925 38 1 7.9651 3.3993 0.8923 39 1 7.9658 3.3992 -0.8876 40 1 10.2228 2.3714 -0.8860 41 1 10.2214 2.3717 0.8940 42 1 12.3165 3.8151 0.0038 43 1 12.5896 7.4829 -1.4355 44 1 12.8995 5.8314 -2.0235 45 1 11.2276 6.4226 -1.8696 46 1 14.1234 9.1334 0.3595 47 1 6.1597 1.4327 2.1341 48 1 3.6973 1.4416 2.1332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:23 Heat of formation + Delta-G solvation = -75.950211 kcal Electronic energy + Delta-G solvation = -23249.632094 eV Core-core repulsion = 19880.789639 eV Total energy + Delta-G solvation = -3368.842455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67530 -40.31377 -37.00854 -36.53869 -35.00047 -34.29356 -32.26943 -31.76878 -30.85642 -28.77663 -27.35123 -26.20886 -23.80650 -23.59342 -22.62048 -22.06819 -21.21707 -21.03122 -18.87507 -17.50050 -17.16843 -16.93522 -16.90143 -16.35458 -16.11619 -15.78219 -15.41987 -14.85981 -14.72285 -14.52597 -14.49021 -14.29446 -14.19452 -13.79694 -13.60278 -13.23251 -13.07641 -12.97776 -12.86662 -12.75999 -12.57256 -12.43378 -12.28278 -12.24854 -12.10966 -11.94954 -11.93069 -11.55970 -11.54117 -11.45792 -11.09547 -10.70049 -10.55205 -9.77687 -9.71491 -9.33395 -8.17892 -6.35716 0.46095 0.54698 1.44242 1.44934 1.57374 1.89585 2.36513 2.68379 2.89377 3.12495 3.79265 3.90783 3.93617 4.01897 4.09469 4.17945 4.24542 4.27552 4.36886 4.51933 4.55827 4.65854 4.67195 4.73478 4.75063 4.81607 4.87513 4.89590 4.92263 4.93180 5.01959 5.09444 5.15615 5.15916 5.24853 5.31328 5.33206 5.44382 5.44613 5.45892 5.57743 5.62903 5.70226 5.77030 5.80129 5.92253 6.10442 6.18555 6.73414 7.02127 7.32910 7.62940 8.88761 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041349 B = 0.001872 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.002471 B =14952.844983 C =15042.680942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.097 4.097 8 C -0.071 4.071 9 C -0.089 4.089 10 C -0.127 4.127 11 C 0.490 3.510 12 O -0.609 6.609 13 N -0.708 5.708 14 C 0.266 3.734 15 H -0.006 1.006 16 C -0.133 4.133 17 C -0.545 4.545 18 H 0.075 0.925 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 0.975 3.025 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.284 1.284 25 C -0.128 4.128 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.406 0.594 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.010 0.990 46 H 0.265 0.735 47 H 0.129 0.871 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.144 -20.800 -1.083 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.097 4.097 8 C -0.108 4.108 9 C -0.127 4.127 10 C -0.166 4.166 11 C 0.279 3.721 12 O -0.492 6.492 13 N -0.357 5.357 14 C 0.163 3.837 15 H 0.012 0.988 16 C -0.192 4.192 17 C -0.584 4.584 18 H 0.093 0.907 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.204 1.204 24 H -0.210 1.210 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.241 0.759 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.147 0.853 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.646 -19.961 -1.100 28.029 hybrid contribution 1.085 0.591 0.295 1.270 sum -18.561 -19.371 -0.805 26.840 Atomic orbital electron populations 1.21783 0.94835 1.02110 1.02161 1.21471 0.96312 0.95436 1.02026 1.20648 0.89685 0.97942 1.03262 1.20142 0.96683 0.99765 0.93127 1.21251 0.94224 1.00755 0.98268 1.21289 0.94643 1.00434 0.98119 1.20095 0.96403 0.99745 0.93429 1.20590 0.90169 0.95580 1.04454 1.21183 0.93187 0.96611 1.01738 1.21713 0.97087 0.91176 1.06631 1.21671 0.82288 0.93040 0.75139 1.90632 1.56617 1.48930 1.52973 1.46319 1.06745 1.09938 1.72708 1.18333 0.93361 0.78921 0.93125 0.98797 1.21889 0.96967 1.02725 0.97577 1.21597 1.00655 0.94835 1.41263 0.90702 1.25850 1.02494 0.94960 0.95521 1.70073 1.39511 0.99174 1.47036 0.85258 0.78462 0.78645 0.77716 1.18190 1.20430 1.21036 1.21290 0.94649 1.00476 0.98135 1.21249 0.94225 1.00781 0.98274 0.92418 0.92402 0.92210 0.92215 0.92246 0.90702 0.90659 0.84945 0.85190 0.89254 0.89367 0.93514 0.93353 0.86268 0.86476 0.75852 0.91645 0.93945 0.97122 0.92590 0.85279 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.11 -1.38 5.92 30.60 0.18 -1.20 16 3 C -0.08 -1.08 5.34 29.85 0.16 -0.92 16 4 C -0.10 -1.79 5.13 -19.87 -0.10 -1.89 16 5 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 6 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 7 C -0.10 -2.04 5.13 -19.87 -0.10 -2.14 16 8 C -0.07 -1.31 5.35 29.85 0.16 -1.15 16 9 C -0.09 -2.30 4.49 30.59 0.14 -2.16 16 10 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 11 C 0.49 19.49 7.79 87.66 0.68 20.17 16 12 O -0.61 -30.74 15.64 -3.04 -0.05 -30.79 16 13 N -0.71 -29.43 5.07 -446.10 -2.26 -31.69 16 14 C 0.27 14.12 2.56 44.25 0.11 14.23 16 15 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 16 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 17 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 18 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 19 C 0.01 0.62 5.30 84.65 0.45 1.07 16 20 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 21 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.13 -2.63 9.70 22.27 0.22 -2.42 16 26 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 34 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 37 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 39 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.41 13.81 8.54 -92.70 -0.79 13.02 16 43 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 44 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 48 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -70.80 394.60 4.40 -66.40 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.12 Total: 27.26 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.32 Total: -22.11 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.02 Total: -84.98 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.79 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -70.80 4.40 -66.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.549 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds