Wall clock time and date at job start Tue Mar 31 2020 07:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.53409 * 2 1 4 4 C 1.53119 * 109.49927 * 239.90748 * 2 1 3 5 5 C 1.53119 * 109.16227 * 297.71084 * 4 2 1 6 6 C 1.53035 * 109.27855 * 302.34776 * 5 4 2 7 7 H 1.09006 * 109.46373 * 299.16482 * 6 5 4 8 8 C 1.52996 * 109.45744 * 179.18631 * 6 5 4 9 9 O 1.42904 * 109.47383 * 304.29408 * 8 6 5 10 10 N 1.46848 * 109.52441 * 59.17511 * 6 5 4 11 11 C 1.46896 * 111.00253 * 174.15894 * 10 6 5 12 12 C 1.50705 * 109.47173 * 191.91236 * 11 10 6 13 13 C 1.38632 * 119.74957 * 269.72820 * 12 11 10 14 14 C 1.37623 * 120.24718 * 179.72208 * 13 12 11 15 15 C 1.40720 * 119.73958 * 0.52728 * 14 13 12 16 16 C 1.41393 * 120.23819 * 179.72251 * 15 14 13 17 17 H 1.08001 * 120.00365 * 205.02288 * 16 15 14 18 18 C 1.39947 * 120.00364 * 25.03270 * 16 15 14 19 19 N 1.30829 * 119.99603 * 16.44492 * 18 16 15 20 20 Si 1.86798 * 120.00296 * 196.44458 * 18 16 15 21 21 H 1.48500 * 109.46915 * 60.00030 * 20 18 16 22 22 H 1.48501 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47320 * 299.99746 * 20 18 16 24 24 C 1.40705 * 119.51634 * 359.75023 * 15 14 13 25 25 C 1.37619 * 119.74511 * 359.97438 * 24 15 14 26 26 C 1.46848 * 111.19896 * 298.26353 * 10 6 5 27 27 H 1.09004 * 109.46880 * 299.89696 * 1 2 3 28 28 H 1.08997 * 109.47269 * 59.89797 * 1 2 3 29 29 H 1.08997 * 109.47121 * 179.89645 * 1 2 3 30 30 H 1.09006 * 109.46738 * 180.09752 * 3 2 1 31 31 H 1.08991 * 109.47641 * 300.10147 * 3 2 1 32 32 H 1.08994 * 109.47044 * 60.10466 * 3 2 1 33 33 H 1.09001 * 109.52148 * 177.80819 * 4 2 1 34 34 H 1.09000 * 109.58081 * 57.64792 * 4 2 1 35 35 H 1.09001 * 109.50747 * 182.40745 * 5 4 2 36 36 H 1.08997 * 109.50135 * 62.28425 * 5 4 2 37 37 H 1.09005 * 109.47140 * 64.29022 * 8 6 5 38 38 H 1.08997 * 109.47894 * 184.29370 * 8 6 5 39 39 H 0.96695 * 114.00360 * 179.97438 * 9 8 6 40 40 H 1.08995 * 109.47615 * 311.91317 * 11 10 6 41 41 H 1.09000 * 109.47152 * 71.91605 * 11 10 6 42 42 H 1.07998 * 119.87693 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.13011 * 180.27689 * 14 13 12 44 44 H 0.97008 * 119.99765 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.13194 * 179.97438 * 24 15 14 46 46 H 1.08003 * 119.87770 * 179.97438 * 25 24 15 47 47 H 1.09003 * 109.46197 * 181.75534 * 26 10 6 48 48 H 1.09003 * 109.46006 * 301.71561 * 26 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0411 -0.7237 -1.2488 5 6 1.5749 -2.1817 -1.2110 6 6 2.0846 -2.8420 0.0721 7 1 3.1743 -2.8196 0.0839 8 6 1.6039 -4.2935 0.1239 9 8 0.1800 -4.3283 0.0071 10 7 1.5676 -2.1135 1.2377 11 6 1.9224 -2.7997 2.4871 12 6 1.1416 -2.2006 3.6285 13 6 1.6709 -1.1348 4.3395 14 6 0.9642 -0.5761 5.3799 15 6 -0.2953 -1.0982 5.7280 16 6 -1.0279 -0.5362 6.7989 17 1 -1.7561 -1.1336 7.3274 18 6 -0.8096 0.7943 7.1739 19 7 -0.1867 1.6091 6.3616 20 14 -1.4074 1.4068 8.8343 21 1 -0.7611 0.6189 9.9145 22 1 -1.0543 2.8409 8.9892 23 1 -2.8813 1.2475 8.9193 24 6 -0.8201 -2.1840 5.0031 25 6 -0.0983 -2.7231 3.9627 26 6 2.0410 -0.7235 1.2479 27 1 -0.3633 0.5123 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0276 -0.0019 30 1 3.1316 1.4407 -0.0017 31 1 1.6774 1.9567 -0.8890 32 1 1.6804 1.9556 0.8909 33 1 3.1304 -0.6900 -1.2691 34 1 1.6450 -0.2377 -2.1405 35 1 1.9714 -2.7132 -2.0760 36 1 0.4856 -2.2160 -1.2299 37 1 2.0496 -4.8535 -0.6983 38 1 1.9016 -4.7414 1.0719 39 1 -0.1950 -5.2193 0.0318 40 1 1.6833 -3.8596 2.4002 41 1 2.9895 -2.6823 2.6758 42 1 2.6397 -0.7387 4.0733 43 1 1.3764 0.2571 5.9296 44 1 -0.0357 2.5314 6.6214 45 1 -1.7857 -2.5928 5.2620 46 1 -0.4989 -3.5568 3.4051 47 1 1.6670 -0.2190 2.1388 48 1 3.1309 -0.7111 1.2543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598649962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:11 Heat of formation + Delta-G solvation = -40.817609 kcal Electronic energy + Delta-G solvation = -26090.290749 eV Core-core repulsion = 22722.971758 eV Total energy + Delta-G solvation = -3367.318991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.79935 -37.45025 -36.61181 -34.73346 -33.49275 -32.11580 -29.86001 -29.21398 -28.03218 -26.88754 -26.78518 -24.56618 -23.74970 -22.32785 -20.84456 -20.32987 -19.57912 -18.30688 -17.22348 -17.05293 -15.76555 -15.39430 -15.14138 -14.62818 -14.39090 -14.08626 -13.85131 -13.54672 -13.35883 -13.30134 -12.90553 -12.85704 -12.35796 -12.22205 -11.86364 -11.83859 -11.67490 -11.52376 -11.42808 -11.16814 -11.03829 -10.93839 -10.88451 -10.59029 -10.53436 -10.34122 -10.23669 -9.95865 -9.89119 -9.59766 -9.44243 -9.28671 -9.07598 -7.72751 -7.34263 -7.18750 -6.68655 -4.28354 2.80988 3.09083 3.11963 3.16110 3.24035 3.97346 4.25831 4.44498 4.73572 4.87282 4.95836 5.03281 5.20735 5.37757 5.40224 5.52817 5.60070 5.73702 5.76745 5.79355 5.84980 5.87561 5.95116 5.99665 6.03436 6.10202 6.18206 6.28995 6.33639 6.36541 6.38230 6.45556 6.52244 6.55480 6.56040 6.74589 6.97497 7.01707 7.14068 7.35121 7.46168 7.61615 7.63979 7.70564 7.81462 7.98188 8.12516 8.23372 8.38443 8.71303 8.96929 9.05587 10.25355 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.004144 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.028213 B = 6755.198171 C = 7645.683099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.106 4.106 6 C 0.084 3.916 7 H 0.040 0.960 8 C 0.080 3.920 9 O -0.550 6.550 10 N -0.510 5.510 11 C 0.115 3.885 12 C -0.200 4.200 13 C -0.096 4.096 14 C -0.165 4.165 15 C 0.112 3.888 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.906 3.094 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.228 4.228 25 C -0.066 4.066 26 C 0.067 3.933 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.369 0.631 40 H 0.068 0.932 41 H 0.017 0.983 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -5.378 -12.447 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 C -0.199 4.199 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.025 4.025 7 H 0.058 0.942 8 C 0.002 3.998 9 O -0.353 6.353 10 N -0.235 5.235 11 C -0.011 4.011 12 C -0.202 4.202 13 C -0.115 4.115 14 C -0.184 4.184 15 C 0.110 3.890 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.247 4.247 25 C -0.085 4.085 26 C -0.061 4.061 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.214 0.786 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 5.006 -4.466 -12.547 14.228 hybrid contribution 0.659 -0.169 0.812 1.059 sum 5.665 -4.635 -11.735 13.831 Atomic orbital electron populations 1.21754 0.93602 1.03102 1.00346 1.20543 0.96899 0.94168 0.94414 1.21840 1.00290 0.95883 1.01858 1.21662 0.99634 0.95751 0.97641 1.21535 1.03015 0.94741 0.95122 1.21669 0.95615 0.92399 0.92777 0.94193 1.22306 0.82269 0.96225 0.98989 1.86650 1.19686 1.32234 1.96747 1.61940 1.59408 1.01294 1.00826 1.20851 0.95309 0.97206 0.87739 1.18816 0.98101 1.02584 1.00656 1.20507 0.97822 0.96126 0.97078 1.21274 0.95176 1.02343 0.99611 1.17592 0.90853 0.90012 0.90589 1.19551 1.19907 0.96053 1.13936 0.90682 1.25876 0.93622 0.96786 0.97796 1.69825 1.32396 1.05567 1.34341 0.86405 0.80047 0.77861 0.82599 1.18931 1.20412 1.19067 1.20965 0.99799 1.03592 1.00365 1.20299 0.93826 0.98197 0.96199 1.22176 0.95721 0.89334 0.98841 0.92735 0.94350 0.90713 0.93294 0.92912 0.92189 0.92953 0.92254 0.92714 0.89702 0.94257 0.93296 0.78604 0.91394 0.96442 0.90134 0.86601 0.91001 0.89291 0.89543 0.89005 0.96372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.04 37.16 0.30 -1.77 16 2 C -0.06 -0.87 0.77 -154.43 -0.12 -0.99 16 3 C -0.14 -1.87 8.48 37.16 0.32 -1.56 16 4 C -0.11 -1.37 4.79 -26.61 -0.13 -1.50 16 5 C -0.11 -1.36 4.84 -26.65 -0.13 -1.49 16 6 C 0.08 1.16 2.23 -67.72 -0.15 1.01 16 7 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 8 C 0.08 0.97 6.31 37.16 0.23 1.20 16 9 O -0.55 -7.17 12.73 -35.23 -0.45 -7.62 16 10 N -0.51 -8.50 3.69 -228.13 -0.84 -9.35 16 11 C 0.11 2.06 4.87 -4.98 -0.02 2.03 16 12 C -0.20 -4.35 4.96 -104.33 -0.52 -4.86 16 13 C -0.10 -2.24 7.90 -39.66 -0.31 -2.55 16 14 C -0.16 -4.30 8.69 -38.87 -0.34 -4.64 16 15 C 0.11 3.02 5.57 -106.83 -0.60 2.43 16 16 C -0.46 -12.53 9.06 -37.74 -0.34 -12.87 16 17 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 18 C 0.08 1.94 5.17 -17.34 -0.09 1.86 16 19 N -0.80 -20.83 10.91 55.55 0.61 -20.22 16 20 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.23 -5.71 9.80 -38.88 -0.38 -6.09 16 25 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 26 C 0.07 1.12 3.91 -3.84 -0.02 1.11 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.30 6.01 -51.93 -0.31 0.99 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.24 5.99 -51.93 -0.31 0.93 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.59 5.83 -51.93 -0.30 0.29 16 39 H 0.37 3.14 9.12 45.56 0.42 3.56 16 40 H 0.07 1.14 5.42 -51.93 -0.28 0.86 16 41 H 0.02 0.31 8.04 -51.93 -0.42 -0.11 16 42 H 0.08 1.73 7.93 -52.49 -0.42 1.31 16 43 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 44 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 45 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 46 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.09 1.83 5.80 -51.93 -0.30 1.53 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -28.40 365.47 -10.18 -38.58 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.29 Total: 9.76 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -2.68 Total: -30.59 kcal Atomic # 7 Polarization: -29.33 SS G_CDS: -0.24 Total: -29.57 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.45 Total: -7.62 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.40 -10.18 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598649962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.236 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds