Wall clock time and date at job start Tue Mar 31 2020 07:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.53409 * 2 1 4 4 C 1.53119 * 109.49927 * 239.90748 * 2 1 3 5 5 C 1.53119 * 109.16227 * 297.71084 * 4 2 1 6 6 C 1.53035 * 109.27855 * 302.34776 * 5 4 2 7 7 H 1.09006 * 109.46373 * 299.16482 * 6 5 4 8 8 C 1.52996 * 109.45744 * 179.18631 * 6 5 4 9 9 O 1.42904 * 109.47383 * 304.29408 * 8 6 5 10 10 N 1.46848 * 109.52441 * 59.17511 * 6 5 4 11 11 C 1.46896 * 111.00253 * 174.15894 * 10 6 5 12 12 C 1.50705 * 109.47173 * 191.91236 * 11 10 6 13 13 C 1.38632 * 119.74957 * 269.72820 * 12 11 10 14 14 C 1.37623 * 120.24718 * 179.72208 * 13 12 11 15 15 C 1.40720 * 119.73958 * 0.52728 * 14 13 12 16 16 C 1.41393 * 120.23819 * 179.72251 * 15 14 13 17 17 H 1.08001 * 120.00365 * 205.02288 * 16 15 14 18 18 C 1.39947 * 120.00364 * 25.03270 * 16 15 14 19 19 N 1.30829 * 119.99603 * 16.44492 * 18 16 15 20 20 Si 1.86798 * 120.00296 * 196.44458 * 18 16 15 21 21 H 1.48500 * 109.46915 * 60.00030 * 20 18 16 22 22 H 1.48501 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47320 * 299.99746 * 20 18 16 24 24 C 1.40705 * 119.51634 * 359.75023 * 15 14 13 25 25 C 1.37619 * 119.74511 * 359.97438 * 24 15 14 26 26 C 1.46848 * 111.19896 * 298.26353 * 10 6 5 27 27 H 1.09004 * 109.46880 * 299.89696 * 1 2 3 28 28 H 1.08997 * 109.47269 * 59.89797 * 1 2 3 29 29 H 1.08997 * 109.47121 * 179.89645 * 1 2 3 30 30 H 1.09006 * 109.46738 * 180.09752 * 3 2 1 31 31 H 1.08991 * 109.47641 * 300.10147 * 3 2 1 32 32 H 1.08994 * 109.47044 * 60.10466 * 3 2 1 33 33 H 1.09001 * 109.52148 * 177.80819 * 4 2 1 34 34 H 1.09000 * 109.58081 * 57.64792 * 4 2 1 35 35 H 1.09001 * 109.50747 * 182.40745 * 5 4 2 36 36 H 1.08997 * 109.50135 * 62.28425 * 5 4 2 37 37 H 1.09005 * 109.47140 * 64.29022 * 8 6 5 38 38 H 1.08997 * 109.47894 * 184.29370 * 8 6 5 39 39 H 0.96695 * 114.00360 * 179.97438 * 9 8 6 40 40 H 1.08995 * 109.47615 * 311.91317 * 11 10 6 41 41 H 1.09000 * 109.47152 * 71.91605 * 11 10 6 42 42 H 1.07998 * 119.87693 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.13011 * 180.27689 * 14 13 12 44 44 H 0.97008 * 119.99765 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.13194 * 179.97438 * 24 15 14 46 46 H 1.08003 * 119.87770 * 179.97438 * 25 24 15 47 47 H 1.09003 * 109.46197 * 181.75534 * 26 10 6 48 48 H 1.09003 * 109.46006 * 301.71561 * 26 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0411 -0.7237 -1.2488 5 6 1.5749 -2.1817 -1.2110 6 6 2.0846 -2.8420 0.0721 7 1 3.1743 -2.8196 0.0839 8 6 1.6039 -4.2935 0.1239 9 8 0.1800 -4.3283 0.0071 10 7 1.5676 -2.1135 1.2377 11 6 1.9224 -2.7997 2.4871 12 6 1.1416 -2.2006 3.6285 13 6 1.6709 -1.1348 4.3395 14 6 0.9642 -0.5761 5.3799 15 6 -0.2953 -1.0982 5.7280 16 6 -1.0279 -0.5362 6.7989 17 1 -1.7561 -1.1336 7.3274 18 6 -0.8096 0.7943 7.1739 19 7 -0.1867 1.6091 6.3616 20 14 -1.4074 1.4068 8.8343 21 1 -0.7611 0.6189 9.9145 22 1 -1.0543 2.8409 8.9892 23 1 -2.8813 1.2475 8.9193 24 6 -0.8201 -2.1840 5.0031 25 6 -0.0983 -2.7231 3.9627 26 6 2.0410 -0.7235 1.2479 27 1 -0.3633 0.5123 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0276 -0.0019 30 1 3.1316 1.4407 -0.0017 31 1 1.6774 1.9567 -0.8890 32 1 1.6804 1.9556 0.8909 33 1 3.1304 -0.6900 -1.2691 34 1 1.6450 -0.2377 -2.1405 35 1 1.9714 -2.7132 -2.0760 36 1 0.4856 -2.2160 -1.2299 37 1 2.0496 -4.8535 -0.6983 38 1 1.9016 -4.7414 1.0719 39 1 -0.1950 -5.2193 0.0318 40 1 1.6833 -3.8596 2.4002 41 1 2.9895 -2.6823 2.6758 42 1 2.6397 -0.7387 4.0733 43 1 1.3764 0.2571 5.9296 44 1 -0.0357 2.5314 6.6214 45 1 -1.7857 -2.5928 5.2620 46 1 -0.4989 -3.5568 3.4051 47 1 1.6670 -0.2190 2.1388 48 1 3.1309 -0.7111 1.2543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598649962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:10 Heat of formation + Delta-G solvation = -57.378539 kcal Electronic energy + Delta-G solvation = -26091.008885 eV Core-core repulsion = 22722.971758 eV Total energy + Delta-G solvation = -3368.037127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01558 -39.26962 -37.60275 -36.21901 -35.14240 -33.37299 -31.57729 -31.13705 -29.06998 -28.48414 -28.09028 -26.13104 -24.89472 -23.75029 -22.74026 -21.72073 -21.09780 -19.43173 -19.18937 -18.02277 -17.21989 -16.83699 -16.57376 -16.12312 -15.72427 -15.44320 -15.26668 -15.05525 -14.90917 -14.45468 -14.31528 -14.04299 -13.94049 -13.74143 -13.31513 -13.25202 -13.14150 -12.91342 -12.77332 -12.67701 -12.62068 -12.36836 -12.30636 -12.16205 -11.97520 -11.70744 -11.47348 -11.32800 -11.23186 -11.02173 -10.96765 -10.93133 -10.57824 -9.32043 -9.16722 -8.93632 -8.59577 -6.30656 0.98328 1.19868 1.36846 1.48268 1.53231 2.21287 2.69266 3.14790 3.56299 3.76520 3.80095 3.93132 3.94413 4.12794 4.29267 4.34780 4.35986 4.46648 4.51866 4.57419 4.58590 4.68105 4.69628 4.74051 4.82962 4.85609 4.92535 4.96840 5.02436 5.03675 5.08042 5.08724 5.14642 5.18369 5.23379 5.36773 5.41644 5.44110 5.51657 5.54747 5.73245 5.74854 6.01057 6.13335 6.22696 6.37539 6.43720 6.47415 6.74024 6.97755 7.08126 7.09367 8.36388 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.004144 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.028213 B = 6755.198171 C = 7645.683099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.104 4.104 5 C -0.102 4.102 6 C 0.078 3.922 7 H 0.052 0.948 8 C 0.081 3.919 9 O -0.574 6.574 10 N -0.522 5.522 11 C 0.120 3.880 12 C -0.185 4.185 13 C -0.095 4.095 14 C -0.188 4.188 15 C 0.080 3.920 16 C -0.505 4.505 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.829 5.829 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.244 4.244 25 C -0.069 4.069 26 C 0.070 3.930 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.387 0.613 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.286 0.714 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.050 0.950 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -6.293 -14.481 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.030 4.030 7 H 0.070 0.930 8 C 0.003 3.997 9 O -0.381 6.381 10 N -0.247 5.247 11 C -0.006 4.006 12 C -0.187 4.187 13 C -0.114 4.114 14 C -0.208 4.208 15 C 0.077 3.923 16 C -0.535 4.535 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.455 5.455 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.264 4.264 25 C -0.088 4.088 26 C -0.058 4.058 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.235 0.765 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.127 0.873 47 H 0.069 0.931 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.063 -5.407 -14.601 16.708 hybrid contribution 0.366 0.031 1.295 1.346 sum 6.429 -5.377 -13.306 15.725 Atomic orbital electron populations 1.21660 0.94933 1.01774 0.99629 1.20548 0.95705 0.94991 0.94678 1.21813 1.01063 0.95011 1.01672 1.21629 1.00385 0.95431 0.96662 1.21501 1.01847 0.95068 0.95513 1.21864 0.96320 0.93264 0.91566 0.93037 1.22331 0.82027 0.95185 1.00153 1.86602 1.20388 1.34235 1.96831 1.61830 1.60206 1.01343 1.01277 1.20781 0.94904 0.97894 0.87058 1.19256 0.97642 1.00980 1.00823 1.20687 0.98223 0.96294 0.96219 1.21228 0.95696 1.02767 1.01067 1.17918 0.91545 0.91193 0.91600 1.19798 1.21155 0.97282 1.15239 0.90969 1.26732 0.93472 0.96326 1.01387 1.69893 1.33404 1.06090 1.36132 0.85277 0.79581 0.77642 0.77331 1.18472 1.19162 1.18445 1.21155 1.00379 1.03673 1.01181 1.20568 0.94057 0.98631 0.95539 1.22081 0.95891 0.89555 0.98295 0.96046 0.92357 0.92278 0.92022 0.91097 0.94389 0.91640 0.90686 0.90135 0.91626 0.91255 0.93444 0.76497 0.89643 0.95705 0.88687 0.88460 0.90365 0.89040 0.87258 0.93105 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.04 71.98 0.58 -3.29 16 2 C -0.06 -1.63 0.77 -52.13 -0.04 -1.67 16 3 C -0.14 -3.49 8.48 71.98 0.61 -2.88 16 4 C -0.10 -2.26 4.79 30.67 0.15 -2.11 16 5 C -0.10 -2.26 4.84 30.65 0.15 -2.11 16 6 C 0.08 1.90 2.23 44.94 0.10 2.00 16 7 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 8 C 0.08 1.66 6.31 71.98 0.45 2.12 16 9 O -0.57 -13.45 12.73 -148.98 -1.90 -15.35 16 10 N -0.52 -16.58 3.69 -875.66 -3.23 -19.81 16 11 C 0.12 4.10 4.87 85.56 0.42 4.51 16 12 C -0.19 -8.06 4.96 -19.67 -0.10 -8.16 16 13 C -0.10 -4.56 7.90 22.22 0.18 -4.38 16 14 C -0.19 -10.33 8.69 22.73 0.20 -10.13 16 15 C 0.08 4.52 5.57 -21.29 -0.12 4.40 16 16 C -0.50 -28.57 9.06 23.46 0.21 -28.36 16 17 H 0.07 3.94 7.90 -2.91 -0.02 3.92 16 18 C 0.03 1.84 5.17 85.26 0.44 2.28 16 19 N -0.83 -45.28 10.91 21.83 0.24 -45.04 16 20 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.24 -12.68 9.80 22.73 0.22 -12.46 16 25 C -0.07 -3.18 9.67 22.22 0.21 -2.97 16 26 C 0.07 2.29 3.91 86.32 0.34 2.63 16 27 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 2.04 6.01 -2.39 -0.01 2.03 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.75 5.99 -2.39 -0.01 1.74 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.05 0.98 5.83 -2.39 -0.01 0.97 16 39 H 0.39 5.58 9.12 -74.06 -0.68 4.91 16 40 H 0.09 2.64 5.42 -2.39 -0.01 2.63 16 41 H 0.02 0.82 8.04 -2.39 -0.02 0.80 16 42 H 0.10 4.16 7.93 -2.91 -0.02 4.14 16 43 H 0.10 5.61 6.15 -2.91 -0.02 5.60 16 44 H 0.29 14.17 8.30 -92.70 -0.77 13.40 16 45 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 47 H 0.05 2.08 5.80 -2.39 -0.01 2.07 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -64.56 365.47 1.40 -63.15 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.26 Total: 35.81 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 4.00 Total: -60.58 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -2.99 Total: -64.85 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.90 Total: -15.35 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -64.56 1.40 -63.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598649962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.775 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds