Wall clock time and date at job start Tue Mar 31 2020 09:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 C 1.52994 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47211 * 182.57968 * 4 3 2 6 6 H 1.08998 * 109.47393 * 303.07502 * 5 4 3 7 7 C 1.50699 * 109.46983 * 183.07207 * 5 4 3 8 8 O 1.21279 * 120.00450 * 349.67827 * 7 5 4 9 9 N 1.34781 * 119.99733 * 169.67266 * 7 5 4 10 10 C 1.39235 * 119.99892 * 176.80373 * 9 7 5 11 11 C 1.39481 * 119.83373 * 145.87279 * 10 9 7 12 12 C 1.36380 * 120.17096 * 179.72660 * 11 10 9 13 13 C 1.40876 * 119.82339 * 0.27086 * 12 11 10 14 14 C 1.41151 * 120.15935 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00269 * 208.89042 * 14 13 12 16 16 C 1.39910 * 120.00095 * 28.89327 * 14 13 12 17 17 N 1.30868 * 119.99874 * 12.55058 * 16 14 13 18 18 Si 1.86804 * 119.99869 * 192.54540 * 16 14 13 19 19 H 1.48499 * 109.46755 * 90.00152 * 18 16 14 20 20 H 1.48503 * 109.46767 * 209.99841 * 18 16 14 21 21 H 1.48496 * 109.47002 * 330.00075 * 18 16 14 22 22 C 1.40867 * 119.67389 * 0.02562 * 13 12 11 23 23 C 1.36371 * 119.83101 * 0.02562 * 22 13 12 24 24 C 1.53006 * 109.46889 * 63.07579 * 5 4 3 25 25 C 1.52995 * 109.47005 * 58.60813 * 24 5 4 26 26 C 1.53001 * 109.46703 * 178.60483 * 24 5 4 27 27 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47095 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.47053 * 59.99865 * 1 2 3 30 30 H 1.09007 * 109.46628 * 239.99775 * 2 1 3 31 31 H 1.08998 * 109.47226 * 120.00654 * 2 1 3 32 32 H 1.08998 * 109.46820 * 60.00026 * 3 2 1 33 33 H 1.08997 * 109.47110 * 300.00100 * 3 2 1 34 34 H 1.09001 * 109.47250 * 62.57696 * 4 3 2 35 35 H 1.09005 * 109.46969 * 302.58070 * 4 3 2 36 36 H 0.96997 * 120.00322 * 356.80189 * 9 7 5 37 37 H 1.08003 * 119.91756 * 359.97438 * 11 10 9 38 38 H 1.07991 * 120.08830 * 180.30091 * 12 11 10 39 39 H 0.96998 * 119.99952 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.08551 * 180.02562 * 22 13 12 41 41 H 1.07991 * 119.91897 * 180.02562 * 23 22 13 42 42 H 1.08995 * 109.46625 * 298.60102 * 24 5 4 43 43 H 1.08993 * 109.47943 * 60.90746 * 25 24 5 44 44 H 1.09008 * 109.46776 * 180.91240 * 25 24 5 45 45 H 1.09007 * 109.46997 * 300.90068 * 25 24 5 46 46 H 1.09001 * 109.46976 * 179.97438 * 26 24 5 47 47 H 1.09005 * 109.47071 * 299.98135 * 26 24 5 48 48 H 1.08999 * 109.47214 * 59.98550 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8834 0.0643 6 1 3.6722 3.4513 -0.7719 7 6 5.5851 2.8874 -0.0124 8 8 6.1999 1.8460 0.0792 9 7 6.2481 4.0485 -0.1829 10 6 7.6404 4.0610 -0.1871 11 6 8.3237 4.9603 -1.0055 12 6 9.6873 4.9824 -1.0108 13 6 10.4057 4.0897 -0.1912 14 6 11.8171 4.1068 -0.1908 15 1 12.3680 3.2035 0.0259 16 6 12.5025 5.2939 -0.4711 17 7 11.8578 6.4326 -0.4909 18 14 14.3378 5.2534 -0.8168 19 1 14.5631 5.0711 -2.2733 20 1 14.9526 6.5316 -0.3770 21 1 14.9564 4.1254 -0.0752 22 6 9.7085 3.1802 0.6279 23 6 8.3448 3.1693 0.6217 24 6 3.6348 3.5232 1.3809 25 6 4.1787 2.7061 2.5545 26 6 4.1743 4.9527 1.4613 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9330 0.9693 -0.9131 35 1 3.9337 0.8889 0.8651 36 1 5.7553 4.8753 -0.3027 37 1 7.7716 5.6438 -1.6336 38 1 10.2150 5.6825 -1.6414 39 1 12.3330 7.2556 -0.6849 40 1 10.2525 2.4932 1.2592 41 1 7.8089 2.4729 1.2494 42 1 2.5460 3.5427 1.4253 43 1 5.2681 2.7000 2.5193 44 1 3.8480 3.1526 3.4923 45 1 3.8073 1.6834 2.4883 46 1 3.8567 5.4086 2.3990 47 1 5.2633 4.9331 1.4171 48 1 3.7871 5.5347 0.6250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598652573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:00 Heat of formation + Delta-G solvation = -62.408351 kcal Electronic energy + Delta-G solvation = -24903.102399 eV Core-core repulsion = 21534.847163 eV Total energy + Delta-G solvation = -3368.255236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66628 -39.42107 -37.78058 -36.26641 -35.60214 -34.58993 -31.77308 -31.48689 -30.87857 -28.36501 -27.82724 -26.56224 -23.96345 -23.22749 -22.96158 -22.21757 -21.34345 -20.15851 -19.26623 -18.04221 -17.73237 -17.06710 -16.94483 -16.42943 -15.74041 -15.52550 -15.18631 -14.91351 -14.67351 -14.55637 -14.43414 -14.15895 -14.00603 -13.62304 -13.55879 -13.45490 -13.28326 -12.97340 -12.81333 -12.69804 -12.58784 -12.36181 -12.30110 -12.04679 -11.88195 -11.82937 -11.70037 -11.54601 -11.51611 -11.32752 -11.18433 -11.15224 -10.70117 -10.32535 -9.49162 -8.79682 -8.60192 -6.29042 0.79768 1.11785 1.38503 1.44984 1.51585 1.87959 2.22160 2.40986 2.76169 3.66141 3.71293 3.76049 3.84531 4.11778 4.14791 4.26857 4.32509 4.38088 4.46631 4.50215 4.61625 4.64012 4.76388 4.76965 4.89003 4.91106 4.93543 4.99808 5.05451 5.08898 5.13687 5.14362 5.15042 5.19260 5.29133 5.31679 5.33348 5.43652 5.44876 5.47609 5.51180 5.61572 5.65778 5.88923 6.02457 6.10479 6.36819 6.64261 6.77463 6.92956 6.98445 7.46075 8.36374 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033137 B = 0.002737 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.772127 B =10227.465477 C =10500.660912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.099 4.099 5 C -0.093 4.093 6 H 0.118 0.882 7 C 0.504 3.496 8 O -0.577 6.577 9 N -0.645 5.645 10 C 0.016 3.984 11 C -0.117 4.117 12 C -0.164 4.164 13 C 0.074 3.926 14 C -0.499 4.499 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.829 5.829 18 Si 0.985 3.015 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.263 1.263 22 C -0.231 4.231 23 C -0.089 4.089 24 C -0.076 4.076 25 C -0.153 4.153 26 C -0.174 4.174 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.288 0.712 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.020 0.980 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 -1.841 0.958 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.115 4.115 6 H 0.136 0.864 7 C 0.293 3.707 8 O -0.456 6.456 9 N -0.292 5.292 10 C -0.078 4.078 11 C -0.137 4.137 12 C -0.184 4.184 13 C 0.071 3.929 14 C -0.529 4.529 15 H 0.089 0.911 16 C -0.180 4.180 17 N -0.456 5.456 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.251 4.251 23 C -0.109 4.109 24 C -0.095 4.095 25 C -0.210 4.210 26 C -0.231 4.231 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.254 0.746 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.319 -2.314 1.009 20.475 hybrid contribution 1.236 0.214 -0.078 1.256 sum -19.083 -2.100 0.932 19.221 Atomic orbital electron populations 1.21751 0.94833 1.01833 1.02238 1.21541 0.96606 0.96891 1.01573 1.21634 0.92778 0.97169 1.03268 1.21420 0.96593 0.93825 1.01894 1.21515 0.88330 1.00019 1.01589 0.86396 1.21483 0.91566 0.82562 0.75043 1.90660 1.70850 1.33243 1.50844 1.43394 1.04100 1.10710 1.70986 1.17285 0.82951 1.03628 1.03887 1.20520 0.94357 0.99961 0.98826 1.20910 0.92950 1.02786 1.01760 1.17979 0.94189 0.91114 0.89577 1.19733 0.91976 0.96743 1.44434 0.91129 1.26713 1.05656 0.94005 0.91642 1.69849 1.40292 0.99483 1.35942 0.85169 0.75902 0.78841 0.79552 1.18605 1.19000 1.18661 1.20845 0.93887 1.05770 1.04599 1.20357 0.93664 0.98586 0.98285 1.21103 1.02257 0.94545 0.91551 1.21946 0.99454 1.00782 0.98834 1.22282 1.01280 0.95907 1.03659 0.92733 0.92156 0.92328 0.92830 0.92619 0.90244 0.90864 0.93415 0.92359 0.74605 0.85892 0.87230 0.90121 0.89002 0.88152 0.86748 0.96036 0.91175 0.91852 0.91167 0.93601 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.92 5.93 30.59 0.18 -1.74 16 3 C -0.11 -1.62 4.99 30.59 0.15 -1.47 16 4 C -0.10 -2.16 3.72 30.59 0.11 -2.05 16 5 C -0.09 -2.03 2.12 -11.54 -0.02 -2.05 16 6 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 7 C 0.50 16.83 5.38 87.66 0.47 17.30 16 8 O -0.58 -24.87 13.63 -3.03 -0.04 -24.91 16 9 N -0.65 -21.94 3.79 -303.10 -1.15 -23.08 16 10 C 0.02 0.72 6.29 38.57 0.24 0.96 16 11 C -0.12 -5.34 9.89 22.14 0.22 -5.12 16 12 C -0.16 -8.71 8.60 22.48 0.19 -8.52 16 13 C 0.07 4.18 5.54 -21.27 -0.12 4.06 16 14 C -0.50 -27.95 9.04 23.39 0.21 -27.74 16 15 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 16 C 0.03 1.74 5.21 85.24 0.44 2.18 16 17 N -0.83 -43.51 10.94 21.82 0.24 -43.27 16 18 Si 0.98 39.09 29.58 68.60 2.03 41.12 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 C -0.23 -12.48 9.74 22.48 0.22 -12.26 16 23 C -0.09 -4.44 8.58 22.14 0.19 -4.25 16 24 C -0.08 -1.35 2.45 -10.79 -0.03 -1.38 16 25 C -0.15 -3.38 8.59 71.98 0.62 -2.76 16 26 C -0.17 -3.11 7.94 71.98 0.57 -2.54 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.95 6.41 -2.39 -0.02 0.94 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.47 6.15 -2.38 -0.01 1.46 16 36 H 0.41 10.93 6.85 -92.71 -0.63 10.30 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.11 5.98 6.29 -2.92 -0.02 5.96 16 39 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 40 H 0.09 4.82 8.06 -2.91 -0.02 4.79 16 41 H 0.10 5.00 6.36 -2.92 -0.02 4.99 16 42 H 0.11 1.37 6.52 -2.39 -0.02 1.36 16 43 H 0.02 0.62 7.29 -2.39 -0.02 0.61 16 44 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.35 6.28 -2.38 -0.01 1.33 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.11 5.38 -2.38 -0.01 1.10 16 48 H 0.08 1.06 8.11 -2.39 -0.02 1.04 16 Total: -1.00 -67.27 372.53 5.76 -61.51 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.31 Total: 37.06 kcal Atomic # 6 Polarization: -52.79 SS G_CDS: 4.37 Total: -48.41 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.91 Total: -66.36 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -67.27 5.76 -61.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.900 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds