Wall clock time and date at job start Tue Mar 31 2020 09:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46908 * 2 1 4 4 C 1.52998 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47169 * 185.17456 * 4 3 2 6 6 H 1.08992 * 109.47719 * 54.42157 * 5 4 3 7 7 C 1.50702 * 109.47105 * 174.42520 * 5 4 3 8 8 O 1.21288 * 119.99940 * 13.09968 * 7 5 4 9 9 N 1.34779 * 120.00145 * 193.10627 * 7 5 4 10 10 C 1.39931 * 120.00037 * 182.87588 * 9 7 5 11 11 C 1.39294 * 119.94667 * 35.06097 * 10 9 7 12 12 C 1.38490 * 120.42698 * 180.25431 * 11 10 9 13 13 C 1.37686 * 120.32067 * 359.44640 * 12 11 10 14 14 C 1.40739 * 119.88595 * 0.27694 * 13 12 11 15 15 C 1.41409 * 120.21344 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99675 * 29.18476 * 15 14 13 17 17 C 1.39928 * 120.00428 * 209.19174 * 15 14 13 18 18 N 1.30825 * 119.99828 * 10.58753 * 17 15 14 19 19 Si 1.86804 * 119.99948 * 190.59850 * 17 15 14 20 20 H 1.48499 * 109.47017 * 89.99789 * 19 17 15 21 21 H 1.48499 * 109.46728 * 209.99149 * 19 17 15 22 22 H 1.48499 * 109.47079 * 329.99439 * 19 17 15 23 23 C 1.38243 * 119.95011 * 214.76160 * 10 9 7 24 24 C 1.53005 * 109.46902 * 294.41694 * 5 4 3 25 25 C 1.52999 * 109.46892 * 174.31871 * 24 5 4 26 26 C 1.53000 * 109.47481 * 294.32290 * 24 5 4 27 27 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46874 * 299.99530 * 1 2 3 29 29 H 1.09000 * 109.47288 * 59.99574 * 1 2 3 30 30 H 1.09000 * 109.46874 * 240.00470 * 2 1 3 31 31 H 1.08995 * 109.46983 * 120.00045 * 2 1 3 32 32 H 1.09007 * 109.47084 * 60.00140 * 3 2 1 33 33 H 1.09000 * 109.47494 * 300.00300 * 3 2 1 34 34 H 1.08994 * 109.47153 * 65.17076 * 4 3 2 35 35 H 1.09003 * 109.47231 * 305.17493 * 4 3 2 36 36 H 0.97002 * 119.99961 * 2.87561 * 9 7 5 37 37 H 1.08001 * 119.78710 * 359.97438 * 11 10 9 38 38 H 1.07997 * 119.83979 * 179.71744 * 12 11 10 39 39 H 1.08001 * 120.05591 * 180.25054 * 13 12 11 40 40 H 0.97007 * 119.99980 * 180.02562 * 18 17 15 41 41 H 1.08009 * 120.15755 * 0.04834 * 23 10 9 42 42 H 1.08997 * 109.46798 * 54.32272 * 24 5 4 43 43 H 1.09004 * 109.46798 * 65.70342 * 25 24 5 44 44 H 1.08998 * 109.46858 * 185.69695 * 25 24 5 45 45 H 1.08995 * 109.47504 * 305.69608 * 25 24 5 46 46 H 1.09000 * 109.47277 * 65.62051 * 26 24 5 47 47 H 1.09002 * 109.47086 * 185.62335 * 26 24 5 48 48 H 1.09002 * 109.46521 * 305.62310 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8792 0.1307 6 1 3.6369 3.3436 1.0117 7 6 5.5805 2.8690 0.2690 8 8 6.2048 1.8573 0.0290 9 7 6.2288 3.9842 0.6596 10 6 7.6263 3.9927 0.7301 11 6 8.3736 3.2687 -0.1961 12 6 9.7571 3.2659 -0.1324 13 6 10.4096 3.9885 0.8411 14 6 9.6679 4.7293 1.7802 15 6 10.3309 5.4734 2.7833 16 1 11.3168 5.8729 2.5965 17 6 9.7098 5.6922 4.0179 18 7 8.6160 5.0431 4.3240 19 14 10.4424 6.9113 5.2290 20 1 9.8695 8.2590 4.9824 21 1 10.1239 6.4842 6.6151 22 1 11.9160 6.9600 5.0522 23 6 8.2633 4.7244 1.7149 24 6 3.6881 3.6742 -1.1164 25 6 4.0722 5.1430 -0.9264 26 6 4.4224 3.1084 -2.3336 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 1.0109 -0.9318 35 1 3.9330 0.8507 0.8409 36 1 5.7266 4.7810 0.8919 37 1 7.8708 2.7024 -0.9661 38 1 10.3269 2.6976 -0.8526 39 1 11.4887 3.9865 0.8843 40 1 8.1852 5.1950 5.1798 41 1 7.6848 5.2893 2.4310 42 1 2.6122 3.5974 -1.2731 43 1 5.1573 5.2304 -0.8709 44 1 3.7034 5.7270 -1.7695 45 1 3.6297 5.5178 -0.0035 46 1 4.0743 2.0941 -2.5288 47 1 4.2218 3.7350 -3.2027 48 1 5.4943 3.0929 -2.1363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598740291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:08 Heat of formation + Delta-G solvation = -68.693393 kcal Electronic energy + Delta-G solvation = -25145.677516 eV Core-core repulsion = 21777.149740 eV Total energy + Delta-G solvation = -3368.527776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66432 -39.34652 -37.74266 -36.08730 -35.62149 -34.94706 -31.83453 -31.45998 -30.39799 -28.06796 -27.76097 -27.14300 -24.04891 -23.10196 -23.07727 -22.17532 -21.34280 -20.25923 -19.22313 -17.98143 -17.52856 -17.05170 -16.59293 -16.47540 -16.28691 -15.53773 -15.18061 -14.96584 -14.69049 -14.58016 -14.51277 -14.17031 -14.11914 -13.62680 -13.51311 -13.42830 -13.07243 -12.93402 -12.80191 -12.62753 -12.57829 -12.31219 -12.20982 -12.04626 -11.85192 -11.82196 -11.80109 -11.65103 -11.57042 -11.36836 -11.22510 -11.19994 -10.82665 -10.44846 -9.28820 -8.77236 -8.54634 -6.38328 0.83165 1.03684 1.39888 1.50448 1.53128 1.83271 2.22824 2.30286 2.78634 3.60605 3.69822 3.73157 3.80422 4.08440 4.13809 4.24573 4.30092 4.44026 4.48826 4.58092 4.61146 4.70600 4.74702 4.76095 4.84506 4.87590 4.91700 4.97922 5.03892 5.09187 5.12606 5.14004 5.15180 5.17859 5.22351 5.28121 5.31951 5.37100 5.42583 5.46090 5.49169 5.57857 5.81064 5.87053 6.01825 6.09034 6.34493 6.59089 6.76941 6.94883 6.98128 7.35390 8.38794 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003342 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.920090 B = 8377.328829 C = 8912.748272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.095 4.095 6 H 0.112 0.888 7 C 0.512 3.488 8 O -0.568 6.568 9 N -0.660 5.660 10 C 0.149 3.851 11 C -0.232 4.232 12 C -0.090 4.090 13 C -0.244 4.244 14 C 0.090 3.910 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.033 3.967 18 N -0.834 5.834 19 Si 0.986 3.014 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.261 1.261 23 C -0.196 4.196 24 C -0.075 4.075 25 C -0.167 4.167 26 C -0.151 4.151 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.413 0.587 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.286 0.714 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.040 0.960 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 -0.806 -6.945 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.116 4.116 6 H 0.130 0.870 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.253 4.253 12 C -0.109 4.109 13 C -0.263 4.263 14 C 0.087 3.913 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.180 4.180 18 N -0.461 5.461 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.218 4.218 24 C -0.094 4.094 25 C -0.224 4.224 26 C -0.209 4.209 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.251 0.749 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.888 -1.567 -6.940 18.326 hybrid contribution 0.719 0.496 0.834 1.208 sum -16.169 -1.071 -6.106 17.317 Atomic orbital electron populations 1.21753 0.94776 1.01882 1.02238 1.21539 0.96657 0.96762 1.01623 1.21630 0.92667 0.97275 1.03225 1.21398 0.96686 0.93428 1.02042 1.21576 0.88316 0.99760 1.01972 0.87043 1.21499 0.91643 0.81835 0.74896 1.90663 1.70076 1.33457 1.50422 1.43761 1.04766 1.15573 1.66493 1.17727 0.82665 0.99134 0.94955 1.20497 0.93675 1.08577 1.02512 1.20748 0.93919 0.98323 0.97875 1.21249 0.98491 1.04820 1.01783 1.17795 0.91975 0.89926 0.91569 1.19776 1.03469 1.31369 0.98214 0.90540 1.26732 0.94627 0.96226 1.00445 1.69869 1.17871 1.35075 1.23249 0.85146 0.79470 0.78251 0.76452 1.18386 1.19548 1.18475 1.21067 0.95200 1.06768 0.98782 1.21112 1.02215 0.94184 0.91875 1.22154 1.01266 0.95430 1.03553 1.21928 0.98961 1.01581 0.98394 0.92635 0.92460 0.92037 0.92365 0.92962 0.91083 0.90107 0.91999 0.93704 0.74897 0.88019 0.86401 0.88048 0.90391 0.86822 0.86719 0.94100 0.90559 0.90706 0.91984 0.90980 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.13 -2.07 5.93 30.59 0.18 -1.89 16 3 C -0.11 -1.79 4.86 30.59 0.15 -1.64 16 4 C -0.10 -2.29 3.87 30.59 0.12 -2.17 16 5 C -0.10 -2.31 1.99 -11.54 -0.02 -2.33 16 6 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 7 C 0.51 18.53 5.03 87.66 0.44 18.97 16 8 O -0.57 -25.47 13.65 -3.05 -0.04 -25.51 16 9 N -0.66 -25.33 4.13 -303.64 -1.25 -26.58 16 10 C 0.15 7.17 6.25 38.10 0.24 7.40 16 11 C -0.23 -11.35 8.67 22.58 0.20 -11.15 16 12 C -0.09 -4.33 10.02 22.20 0.22 -4.11 16 13 C -0.24 -12.58 9.79 22.75 0.22 -12.36 16 14 C 0.09 5.00 5.54 -21.31 -0.12 4.88 16 15 C -0.50 -27.14 9.06 23.46 0.21 -26.93 16 16 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 17 C 0.03 1.67 5.25 85.25 0.45 2.12 16 18 N -0.83 -43.85 10.86 21.82 0.24 -43.61 16 19 Si 0.99 38.34 29.57 68.60 2.03 40.37 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 C -0.20 -10.41 8.57 22.85 0.20 -10.22 16 24 C -0.08 -1.45 2.57 -10.79 -0.03 -1.48 16 25 C -0.17 -3.15 8.08 71.98 0.58 -2.57 16 26 C -0.15 -3.46 8.62 71.98 0.62 -2.84 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.05 6.71 -2.39 -0.02 1.04 16 34 H 0.06 1.60 6.44 -2.39 -0.02 1.58 16 35 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 36 H 0.41 13.27 7.10 -92.71 -0.66 12.61 16 37 H 0.10 4.94 6.45 -2.91 -0.02 4.92 16 38 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.29 13.60 8.30 -92.70 -0.77 12.83 16 41 H 0.11 6.13 6.25 -2.91 -0.02 6.11 16 42 H 0.11 1.55 6.45 -2.39 -0.02 1.53 16 43 H 0.04 1.01 5.97 -2.39 -0.01 0.99 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 1.35 6.74 -2.39 -0.02 1.34 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.02 0.71 6.76 -2.39 -0.02 0.69 16 Total: -1.00 -66.57 374.24 5.62 -60.95 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.28 Total: 41.89 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 4.37 Total: -47.51 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.02 Total: -70.19 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -66.57 5.62 -60.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598740291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.747 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds