Wall clock time and date at job start Tue Mar 31 2020 09:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47288 * 2 1 4 4 C 1.53002 * 109.47412 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46978 * 185.21913 * 4 3 2 6 6 H 1.08998 * 109.47370 * 55.89667 * 5 4 3 7 7 C 1.50701 * 109.46746 * 175.89105 * 5 4 3 8 8 O 1.21282 * 119.99991 * 37.15542 * 7 5 4 9 9 N 1.34777 * 119.99936 * 217.15419 * 7 5 4 10 10 C 1.37144 * 119.99967 * 245.38509 * 9 7 5 11 11 H 1.08004 * 119.99664 * 166.68866 * 10 9 7 12 12 C 1.38892 * 119.99857 * 346.68725 * 10 9 7 13 13 N 1.31419 * 120.00057 * 358.19426 * 12 10 9 14 14 Si 1.86799 * 119.99646 * 178.18466 * 12 10 9 15 15 H 1.48497 * 109.47058 * 60.00379 * 14 12 10 16 16 H 1.48500 * 109.47063 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47547 * 300.00446 * 14 12 10 18 18 C 1.39786 * 120.00139 * 65.38995 * 9 7 5 19 19 C 1.38961 * 120.07793 * 1.42851 * 18 9 7 20 20 C 1.38078 * 119.92399 * 179.75091 * 19 18 9 21 21 C 1.38315 * 120.07566 * 0.52810 * 20 19 18 22 22 C 1.38310 * 120.15437 * 359.72446 * 21 20 19 23 23 C 1.38075 * 120.07772 * 0.02562 * 22 21 20 24 24 C 1.52997 * 109.47292 * 295.89003 * 5 4 3 25 25 C 1.52998 * 109.47209 * 180.02562 * 24 5 4 26 26 C 1.52999 * 109.47293 * 300.01799 * 24 5 4 27 27 H 1.08993 * 109.47192 * 60.00003 * 1 2 3 28 28 H 1.08998 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 299.99474 * 1 2 3 30 30 H 1.09001 * 109.47065 * 239.99982 * 2 1 3 31 31 H 1.08997 * 109.47913 * 119.99972 * 2 1 3 32 32 H 1.09001 * 109.47082 * 59.99992 * 3 2 1 33 33 H 1.09006 * 109.46729 * 300.00197 * 3 2 1 34 34 H 1.08999 * 109.46874 * 65.21810 * 4 3 2 35 35 H 1.09006 * 109.46626 * 305.21844 * 4 3 2 36 36 H 0.97008 * 119.99834 * 185.21178 * 13 12 10 37 37 H 1.08003 * 120.03902 * 0.02562 * 19 18 9 38 38 H 1.07999 * 119.96371 * 180.25952 * 20 19 18 39 39 H 1.07999 * 119.92268 * 179.70618 * 21 20 19 40 40 H 1.08001 * 119.95922 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.04243 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47009 * 60.01430 * 24 5 4 43 43 H 1.08992 * 109.47346 * 193.41906 * 25 24 5 44 44 H 1.09008 * 109.47002 * 73.42344 * 25 24 5 45 45 H 1.08998 * 109.47180 * 313.42633 * 25 24 5 46 46 H 1.08996 * 109.46906 * 307.51414 * 26 24 5 47 47 H 1.09000 * 109.47376 * 67.51077 * 26 24 5 48 48 H 1.09002 * 109.47279 * 187.51304 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8790 0.1306 6 1 3.6583 3.3339 1.0268 7 6 5.5836 2.8710 0.2314 8 8 6.2305 2.0750 -0.4158 9 7 6.2094 3.7482 1.0409 10 6 7.0235 4.7140 0.5066 11 1 7.3519 5.5419 1.1175 12 6 7.4256 4.6273 -0.8200 13 7 7.0552 3.6015 -1.5532 14 14 8.4927 5.9689 -1.5620 15 1 9.7675 6.0622 -0.8061 16 1 8.7813 5.6433 -2.9818 17 1 7.7774 7.2681 -1.4881 18 6 6.0289 3.6737 2.4251 19 6 5.2281 2.6774 2.9703 20 6 5.0561 2.6036 4.3383 21 6 5.6709 3.5264 5.1650 22 6 6.4644 4.5225 4.6254 23 6 6.6449 4.5992 3.2587 24 6 3.6557 3.6852 -1.0986 25 6 4.1662 5.1215 -0.9677 26 6 4.2474 3.0465 -2.3567 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 1.0119 -0.9339 35 1 3.9337 0.8497 0.8387 36 1 7.3969 3.5017 -2.4556 37 1 4.7445 1.9589 2.3250 38 1 4.4373 1.8270 4.7630 39 1 5.5309 3.4692 6.2344 40 1 6.9426 5.2417 5.2739 41 1 7.2643 5.3775 2.8379 42 1 2.5681 3.6912 -1.1714 43 1 3.6733 5.7513 -1.7082 44 1 5.2434 5.1408 -1.1336 45 1 3.9459 5.4957 0.0321 46 1 5.3222 2.9186 -2.2280 47 1 3.7833 2.0745 -2.5234 48 1 4.0584 3.6914 -3.2149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598807101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:20 Heat of formation + Delta-G solvation = 5.744904 kcal Electronic energy + Delta-G solvation = -26885.316238 eV Core-core repulsion = 23520.016350 eV Total energy + Delta-G solvation = -3365.299889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.00617 -37.87467 -36.25298 -34.43877 -34.14619 -32.35747 -30.42992 -30.00344 -28.45302 -26.75961 -26.18747 -25.03607 -22.64278 -21.91201 -21.27365 -21.11749 -19.83131 -18.51312 -17.41849 -16.27887 -15.68563 -15.16503 -14.91252 -14.74117 -14.15556 -14.11346 -13.66972 -13.38730 -13.34820 -13.18363 -12.99385 -12.59167 -12.35038 -12.21000 -12.06354 -11.91927 -11.55826 -11.40249 -11.10725 -11.06392 -10.95613 -10.80024 -10.69438 -10.60083 -10.49809 -10.40644 -10.33520 -10.12975 -10.05106 -9.78878 -9.74537 -9.48963 -8.55058 -8.29643 -8.13685 -6.83877 -6.07075 -3.90324 2.25891 2.34678 3.16493 3.19315 3.20197 3.74173 4.01344 4.59228 4.66325 5.03052 5.07977 5.09986 5.26046 5.40296 5.59620 5.65065 5.67931 5.70444 5.78174 5.89960 5.91506 5.93765 5.97153 6.12626 6.15466 6.21944 6.25283 6.30176 6.36825 6.38807 6.42966 6.44861 6.51067 6.66342 6.76753 6.77258 6.82284 6.85334 6.91750 7.01415 7.19384 7.31333 7.35218 7.41175 7.42970 7.65183 7.84549 7.97724 8.72706 9.02963 9.31846 9.66127 10.62834 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.007284 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.188848 B = 3843.329457 C = 5868.241834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.107 4.107 5 C -0.103 4.103 6 H 0.075 0.925 7 C 0.532 3.468 8 O -0.404 6.404 9 N -0.451 5.451 10 C -0.311 4.311 11 H 0.102 0.898 12 C 0.020 3.980 13 N -0.830 5.830 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.214 3.786 19 C -0.223 4.223 20 C -0.072 4.072 21 C -0.220 4.220 22 C -0.075 4.075 23 C -0.197 4.197 24 C -0.063 4.063 25 C -0.160 4.160 26 C -0.179 4.179 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.054 0.946 43 H 0.032 0.968 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.130 0.870 47 H 0.034 0.966 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -1.602 3.278 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.145 4.145 5 C -0.126 4.126 6 H 0.093 0.907 7 C 0.319 3.681 8 O -0.267 6.267 9 N -0.155 5.155 10 C -0.438 4.438 11 H 0.120 0.880 12 C -0.184 4.184 13 N -0.469 5.469 14 Si 0.746 3.254 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.198 1.198 18 C 0.104 3.896 19 C -0.247 4.247 20 C -0.091 4.091 21 C -0.241 4.241 22 C -0.094 4.094 23 C -0.220 4.220 24 C -0.082 4.082 25 C -0.217 4.217 26 C -0.235 4.235 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.116 0.884 45 H 0.063 0.937 46 H 0.148 0.852 47 H 0.053 0.947 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.945 -2.140 2.332 8.552 hybrid contribution 0.453 0.777 -0.396 0.983 sum -7.491 -1.364 1.936 7.856 Atomic orbital electron populations 1.21772 0.96337 1.01091 1.01638 1.21537 0.95322 0.97482 1.01891 1.21645 0.95823 0.96111 1.01926 1.21557 0.94488 0.95754 1.02683 1.21603 0.94980 0.96503 0.99500 0.90671 1.19568 0.88102 0.81692 0.78767 1.90481 1.67783 1.31303 1.37099 1.41190 1.42359 1.30253 1.01651 1.19434 1.27719 1.01813 0.94815 0.87999 1.25234 0.98559 0.97725 0.96856 1.70235 1.41206 1.25574 1.09920 0.86095 0.80238 0.80661 0.78421 1.19993 1.20750 1.19801 1.17876 0.94168 0.93865 0.83642 1.20597 1.06607 1.02040 0.95411 1.20606 0.98057 0.97574 0.92850 1.20532 1.05501 0.99781 0.98287 1.20727 0.97139 0.97195 0.94331 1.20607 1.06573 1.02031 0.92749 1.20750 0.97916 0.95217 0.94283 1.22102 1.05264 0.94578 0.99731 1.22473 1.08163 0.97706 0.95198 0.92929 0.93184 0.92884 0.92182 0.92198 0.92249 0.91882 0.90688 0.92593 0.92231 0.87156 0.87639 0.88002 0.87579 0.86114 0.92817 0.94880 0.88363 0.93698 0.85238 0.94666 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.12 -1.64 4.82 -26.73 -0.13 -1.76 16 4 C -0.11 -1.83 3.93 -26.73 -0.11 -1.94 16 5 C -0.10 -2.02 1.15 -91.77 -0.11 -2.13 16 6 H 0.07 1.47 6.99 -51.93 -0.36 1.11 16 7 C 0.53 12.45 2.04 -10.98 -0.02 12.43 16 8 O -0.40 -10.66 12.70 5.56 0.07 -10.59 16 9 N -0.45 -10.83 2.72 -58.97 -0.16 -10.99 16 10 C -0.31 -7.70 8.31 -14.93 -0.12 -7.82 16 11 H 0.10 2.42 5.83 -52.48 -0.31 2.11 16 12 C 0.02 0.50 3.62 -17.49 -0.06 0.44 16 13 N -0.83 -21.27 5.84 55.49 0.32 -20.95 16 14 Si 0.92 19.65 29.56 -169.99 -5.02 14.62 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 18 C 0.21 4.73 6.31 -83.70 -0.53 4.20 16 19 C -0.22 -4.48 8.41 -39.37 -0.33 -4.81 16 20 C -0.07 -1.26 10.04 -39.61 -0.40 -1.66 16 21 C -0.22 -3.73 10.04 -39.53 -0.40 -4.12 16 22 C -0.07 -1.32 10.04 -39.61 -0.40 -1.72 16 23 C -0.20 -4.02 9.30 -39.37 -0.37 -4.38 16 24 C -0.06 -1.20 2.49 -90.62 -0.23 -1.43 16 25 C -0.16 -3.23 8.52 37.16 0.32 -2.91 16 26 C -0.18 -3.57 8.36 37.16 0.31 -3.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.88 6.80 -51.93 -0.35 0.52 16 34 H 0.07 1.38 6.24 -51.93 -0.32 1.06 16 35 H 0.06 0.96 6.98 -51.93 -0.36 0.60 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 37 H 0.11 2.18 4.86 -52.48 -0.25 1.92 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.12 2.45 6.03 -52.48 -0.32 2.13 16 42 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 2.25 3.88 -51.92 -0.20 2.05 16 45 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.13 3.00 3.39 -51.93 -0.18 2.83 16 47 H 0.03 0.65 6.76 -51.93 -0.35 0.29 16 48 H 0.03 0.58 8.13 -51.93 -0.42 0.15 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -26.49 355.45 -9.35 -35.84 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.56 Total: 10.46 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -2.36 Total: -23.75 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.16 Total: -31.94 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.49 -9.35 -35.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598807101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.584 kcal (2) G-P(sol) polarization free energy of solvation -26.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds