Wall clock time and date at job start Tue Mar 31 2020 09:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47288 * 2 1 4 4 C 1.53002 * 109.47412 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46978 * 185.21913 * 4 3 2 6 6 H 1.08998 * 109.47370 * 55.89667 * 5 4 3 7 7 C 1.50701 * 109.46746 * 175.89105 * 5 4 3 8 8 O 1.21282 * 119.99991 * 37.15542 * 7 5 4 9 9 N 1.34777 * 119.99936 * 217.15419 * 7 5 4 10 10 C 1.37144 * 119.99967 * 245.38509 * 9 7 5 11 11 H 1.08004 * 119.99664 * 166.68866 * 10 9 7 12 12 C 1.38892 * 119.99857 * 346.68725 * 10 9 7 13 13 N 1.31419 * 120.00057 * 358.19426 * 12 10 9 14 14 Si 1.86799 * 119.99646 * 178.18466 * 12 10 9 15 15 H 1.48497 * 109.47058 * 60.00379 * 14 12 10 16 16 H 1.48500 * 109.47063 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47547 * 300.00446 * 14 12 10 18 18 C 1.39786 * 120.00139 * 65.38995 * 9 7 5 19 19 C 1.38961 * 120.07793 * 1.42851 * 18 9 7 20 20 C 1.38078 * 119.92399 * 179.75091 * 19 18 9 21 21 C 1.38315 * 120.07566 * 0.52810 * 20 19 18 22 22 C 1.38310 * 120.15437 * 359.72446 * 21 20 19 23 23 C 1.38075 * 120.07772 * 0.02562 * 22 21 20 24 24 C 1.52997 * 109.47292 * 295.89003 * 5 4 3 25 25 C 1.52998 * 109.47209 * 180.02562 * 24 5 4 26 26 C 1.52999 * 109.47293 * 300.01799 * 24 5 4 27 27 H 1.08993 * 109.47192 * 60.00003 * 1 2 3 28 28 H 1.08998 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 299.99474 * 1 2 3 30 30 H 1.09001 * 109.47065 * 239.99982 * 2 1 3 31 31 H 1.08997 * 109.47913 * 119.99972 * 2 1 3 32 32 H 1.09001 * 109.47082 * 59.99992 * 3 2 1 33 33 H 1.09006 * 109.46729 * 300.00197 * 3 2 1 34 34 H 1.08999 * 109.46874 * 65.21810 * 4 3 2 35 35 H 1.09006 * 109.46626 * 305.21844 * 4 3 2 36 36 H 0.97008 * 119.99834 * 185.21178 * 13 12 10 37 37 H 1.08003 * 120.03902 * 0.02562 * 19 18 9 38 38 H 1.07999 * 119.96371 * 180.25952 * 20 19 18 39 39 H 1.07999 * 119.92268 * 179.70618 * 21 20 19 40 40 H 1.08001 * 119.95922 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.04243 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47009 * 60.01430 * 24 5 4 43 43 H 1.08992 * 109.47346 * 193.41906 * 25 24 5 44 44 H 1.09008 * 109.47002 * 73.42344 * 25 24 5 45 45 H 1.08998 * 109.47180 * 313.42633 * 25 24 5 46 46 H 1.08996 * 109.46906 * 307.51414 * 26 24 5 47 47 H 1.09000 * 109.47376 * 67.51077 * 26 24 5 48 48 H 1.09002 * 109.47279 * 187.51304 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8790 0.1306 6 1 3.6583 3.3339 1.0268 7 6 5.5836 2.8710 0.2314 8 8 6.2305 2.0750 -0.4158 9 7 6.2094 3.7482 1.0409 10 6 7.0235 4.7140 0.5066 11 1 7.3519 5.5419 1.1175 12 6 7.4256 4.6273 -0.8200 13 7 7.0552 3.6015 -1.5532 14 14 8.4927 5.9689 -1.5620 15 1 9.7675 6.0622 -0.8061 16 1 8.7813 5.6433 -2.9818 17 1 7.7774 7.2681 -1.4881 18 6 6.0289 3.6737 2.4251 19 6 5.2281 2.6774 2.9703 20 6 5.0561 2.6036 4.3383 21 6 5.6709 3.5264 5.1650 22 6 6.4644 4.5225 4.6254 23 6 6.6449 4.5992 3.2587 24 6 3.6557 3.6852 -1.0986 25 6 4.1662 5.1215 -0.9677 26 6 4.2474 3.0465 -2.3567 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 1.0119 -0.9339 35 1 3.9337 0.8497 0.8387 36 1 7.3969 3.5017 -2.4556 37 1 4.7445 1.9589 2.3250 38 1 4.4373 1.8270 4.7630 39 1 5.5309 3.4692 6.2344 40 1 6.9426 5.2417 5.2739 41 1 7.2643 5.3775 2.8379 42 1 2.5681 3.6912 -1.1714 43 1 3.6733 5.7513 -1.7082 44 1 5.2434 5.1408 -1.1336 45 1 3.9459 5.4957 0.0321 46 1 5.3222 2.9186 -2.2280 47 1 3.7833 2.0745 -2.5234 48 1 4.0584 3.6914 -3.2149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598807101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:19 Heat of formation + Delta-G solvation = -4.488954 kcal Electronic energy + Delta-G solvation = -26885.760012 eV Core-core repulsion = 23520.016350 eV Total energy + Delta-G solvation = -3365.743662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65728 -39.40610 -37.69492 -36.14266 -35.42272 -34.09125 -31.84600 -31.39837 -30.03542 -28.20565 -27.76815 -26.64862 -24.08460 -23.32569 -22.80831 -22.31648 -21.32062 -20.12379 -19.05575 -17.94327 -17.15909 -16.63831 -16.44326 -16.29660 -15.81972 -15.58700 -14.99803 -14.84375 -14.72807 -14.50741 -14.48386 -14.05266 -13.83360 -13.67911 -13.45805 -13.27326 -13.23433 -13.03312 -12.61473 -12.50889 -12.42788 -12.25664 -12.10993 -11.98891 -11.97039 -11.84420 -11.72035 -11.63057 -11.44681 -11.31932 -11.22794 -11.06251 -10.27788 -10.03500 -9.62285 -8.50086 -7.87628 -5.75638 0.75745 0.82833 1.41844 1.45420 1.49284 2.04133 2.27621 2.98054 3.01912 3.34525 3.84060 3.87380 4.10496 4.19889 4.24048 4.25534 4.32497 4.34773 4.51133 4.55181 4.61541 4.67081 4.74317 4.82729 4.84709 4.89069 4.93643 4.94701 4.95398 5.09654 5.13438 5.19186 5.22933 5.25469 5.30062 5.34770 5.37042 5.40682 5.45558 5.49739 5.57393 5.76617 5.78790 5.80669 5.92256 5.97746 6.19369 6.41439 6.91547 7.29540 7.60288 7.91405 8.79444 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.007284 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.188848 B = 3843.329457 C = 5868.241834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.099 4.099 5 C -0.094 4.094 6 H 0.074 0.926 7 C 0.536 3.464 8 O -0.450 6.450 9 N -0.476 5.476 10 C -0.323 4.323 11 H 0.101 0.899 12 C -0.020 4.020 13 N -0.847 5.847 14 Si 0.971 3.029 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.183 3.817 19 C -0.234 4.234 20 C -0.071 4.071 21 C -0.204 4.204 22 C -0.073 4.073 23 C -0.214 4.214 24 C -0.059 4.059 25 C -0.158 4.158 26 C -0.176 4.176 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.255 0.745 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.101 0.899 47 H 0.044 0.956 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -1.480 5.533 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.117 4.117 6 H 0.092 0.908 7 C 0.325 3.675 8 O -0.316 6.316 9 N -0.182 5.182 10 C -0.450 4.450 11 H 0.119 0.881 12 C -0.221 4.221 13 N -0.487 5.487 14 Si 0.796 3.204 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.190 1.190 18 C 0.077 3.923 19 C -0.257 4.257 20 C -0.089 4.089 21 C -0.224 4.224 22 C -0.092 4.092 23 C -0.237 4.237 24 C -0.078 4.078 25 C -0.215 4.215 26 C -0.233 4.233 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.120 0.880 47 H 0.063 0.937 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.898 -2.004 4.653 11.119 hybrid contribution 1.056 0.728 -0.830 1.528 sum -8.842 -1.277 3.823 9.717 Atomic orbital electron populations 1.21742 0.94622 1.02065 1.02067 1.21518 0.96773 0.96013 1.01816 1.21588 0.93022 0.97666 1.02388 1.21484 0.96869 0.93877 1.01437 1.21552 0.92414 0.98066 0.99622 0.90752 1.20132 0.89421 0.80449 0.77488 1.90446 1.68994 1.33229 1.38978 1.41301 1.43664 1.30715 1.02567 1.19578 1.28249 1.02147 0.95006 0.88117 1.25842 0.99838 0.99251 0.97198 1.70499 1.42026 1.26824 1.09344 0.85305 0.78840 0.79020 0.77205 1.20134 1.21316 1.18982 1.18322 0.95414 0.95206 0.83310 1.20774 1.06514 1.01601 0.96846 1.21038 0.97851 0.98355 0.91687 1.21051 1.03088 0.98035 1.00237 1.21122 0.96783 0.97948 0.93358 1.20766 1.06890 1.01876 0.94167 1.20767 0.99288 0.94226 0.93508 1.22044 1.03743 0.95775 0.99925 1.22374 1.06518 0.98489 0.95920 0.92618 0.91999 0.92340 0.92548 0.92115 0.91504 0.91559 0.92442 0.93233 0.93397 0.87566 0.84231 0.84102 0.84361 0.87065 0.90030 0.93164 0.91066 0.94157 0.88043 0.93692 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.77 5.93 30.59 0.18 -2.59 16 3 C -0.11 -2.87 4.82 30.60 0.15 -2.72 16 4 C -0.10 -3.39 3.93 30.59 0.12 -3.27 16 5 C -0.09 -3.73 1.15 -11.54 -0.01 -3.74 16 6 H 0.07 2.91 6.99 -2.39 -0.02 2.89 16 7 C 0.54 26.03 2.04 87.66 0.18 26.21 16 8 O -0.45 -25.06 12.70 -3.04 -0.04 -25.10 16 9 N -0.48 -23.67 2.72 -458.88 -1.25 -24.91 16 10 C -0.32 -16.64 8.31 84.02 0.70 -15.94 16 11 H 0.10 5.00 5.83 -2.91 -0.02 4.98 16 12 C -0.02 -1.03 3.62 84.91 0.31 -0.72 16 13 N -0.85 -45.65 5.84 21.65 0.13 -45.52 16 14 Si 0.97 41.83 29.56 68.60 2.03 43.86 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 C 0.18 8.20 6.31 38.22 0.24 8.44 16 19 C -0.23 -9.22 8.41 22.41 0.19 -9.04 16 20 C -0.07 -2.25 10.04 22.25 0.22 -2.03 16 21 C -0.20 -6.02 10.04 22.31 0.22 -5.79 16 22 C -0.07 -2.38 10.04 22.25 0.22 -2.16 16 23 C -0.21 -8.67 9.30 22.40 0.21 -8.46 16 24 C -0.06 -2.25 2.49 -10.80 -0.03 -2.28 16 25 C -0.16 -6.42 8.52 71.98 0.61 -5.80 16 26 C -0.18 -7.13 8.36 71.98 0.60 -6.53 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.70 6.80 -2.38 -0.02 1.69 16 34 H 0.06 2.17 6.24 -2.39 -0.01 2.15 16 35 H 0.05 1.73 6.98 -2.38 -0.02 1.71 16 36 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 37 H 0.11 4.20 4.86 -2.91 -0.01 4.19 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.11 4.61 6.03 -2.91 -0.02 4.60 16 42 H 0.08 2.64 6.66 -2.39 -0.02 2.62 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 3.36 3.88 -2.38 -0.01 3.35 16 45 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 46 H 0.10 4.91 3.39 -2.39 -0.01 4.90 16 47 H 0.04 1.67 6.76 -2.39 -0.02 1.66 16 48 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -60.09 355.45 6.64 -53.45 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.94 Total: 36.61 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 4.83 Total: -38.38 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.12 Total: -70.44 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.04 Total: -25.10 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -60.09 6.64 -53.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598807101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.961 kcal (2) G-P(sol) polarization free energy of solvation -60.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds