Wall clock time and date at job start Tue Mar 31 2020 08:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47457 * 302.92628 * 3 2 1 5 5 C 1.52998 * 109.47058 * 296.77253 * 4 3 2 6 6 C 1.52994 * 109.47143 * 62.93015 * 3 2 1 7 7 N 1.46507 * 109.47107 * 64.99587 * 6 3 2 8 8 C 1.46499 * 119.99904 * 270.00202 * 7 6 3 9 9 C 1.53005 * 109.46941 * 264.04290 * 8 7 6 10 10 C 1.34778 * 119.99935 * 90.00161 * 7 6 3 11 11 O 1.21615 * 119.99704 * 4.74633 * 10 7 6 12 12 C 1.47426 * 119.99808 * 184.74665 * 10 7 6 13 13 C 1.39231 * 120.28230 * 55.00215 * 12 10 7 14 14 C 1.38221 * 120.08651 * 180.27464 * 13 12 10 15 15 C 1.38821 * 120.68387 * 359.69836 * 14 13 12 16 16 C 1.37600 * 120.56698 * 359.97438 * 15 14 13 17 17 C 1.40706 * 119.88245 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.33036 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00049 * 214.12272 * 18 17 16 20 20 C 1.40277 * 119.99442 * 34.12548 * 18 17 16 21 21 N 1.30625 * 120.00404 * 24.34525 * 20 18 17 22 22 Si 1.86802 * 119.99462 * 204.34611 * 20 18 17 23 23 H 1.48498 * 109.46837 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47127 * 299.99692 * 22 20 18 25 25 H 1.48496 * 109.47420 * 59.99953 * 22 20 18 26 26 H 1.09002 * 109.47089 * 64.82785 * 1 2 3 27 27 H 1.08997 * 109.47356 * 184.83909 * 1 2 3 28 28 H 1.09008 * 109.46731 * 304.83596 * 1 2 3 29 29 H 1.09002 * 109.46761 * 240.00325 * 2 1 3 30 30 H 1.08997 * 109.47648 * 120.00344 * 2 1 3 31 31 H 1.09006 * 109.46752 * 182.93070 * 3 2 1 32 32 H 1.08998 * 109.46750 * 56.77042 * 4 3 2 33 33 H 1.08994 * 109.47202 * 176.77266 * 4 3 2 34 34 H 1.09001 * 109.47707 * 65.82483 * 5 4 3 35 35 H 1.09004 * 109.46869 * 185.82394 * 5 4 3 36 36 H 1.08997 * 109.47271 * 305.82593 * 5 4 3 37 37 H 1.09000 * 109.47033 * 304.99714 * 6 3 2 38 38 H 1.09001 * 109.47069 * 184.99762 * 6 3 2 39 39 H 1.08994 * 109.47539 * 24.04278 * 8 7 6 40 40 H 1.08994 * 109.46953 * 144.04996 * 8 7 6 41 41 H 1.09001 * 109.47389 * 300.00364 * 9 8 7 42 42 H 1.09006 * 109.47101 * 60.00397 * 9 8 7 43 43 H 1.08997 * 109.46959 * 179.97438 * 9 8 7 44 44 H 1.07993 * 119.95641 * 359.97438 * 13 12 10 45 45 H 1.08004 * 119.65828 * 179.71568 * 14 13 12 46 46 H 1.07997 * 119.71977 * 180.02562 * 15 14 13 47 47 H 1.08004 * 120.05960 * 180.02562 * 16 15 14 48 48 H 0.97005 * 119.99856 * 3.43002 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4708 2.1848 -1.2108 5 6 1.9850 1.5336 -2.4962 6 6 1.5911 2.1422 1.2844 7 7 2.2318 1.5045 2.4374 8 6 1.5761 0.3809 3.1110 9 6 0.7938 0.8974 4.3202 10 6 3.4244 1.9516 2.8783 11 8 3.9280 2.9375 2.3749 12 6 4.1183 1.2454 3.9706 13 6 4.3893 -0.1163 3.8657 14 6 5.0351 -0.7755 4.8948 15 6 5.4262 -0.0926 6.0384 16 6 5.1782 1.2546 6.1681 17 6 4.5224 1.9494 5.1351 18 6 4.2632 3.3288 5.2583 19 1 3.3660 3.7501 4.8295 20 6 5.1708 4.1549 5.9378 21 7 6.4247 3.8033 6.0389 22 14 4.5859 5.7579 6.6979 23 1 5.7300 6.4415 7.3530 24 1 4.0279 6.6344 5.6368 25 1 3.5351 5.4726 7.7076 26 1 -0.3633 0.4371 -0.9301 27 1 -0.3634 -1.0240 0.0867 28 1 -0.3633 0.5871 0.8436 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1288 1.4429 -0.0525 32 1 0.3822 2.1350 -1.1886 33 1 1.7875 3.2272 -1.1797 34 1 1.5830 0.5237 -2.5780 35 1 1.6646 2.1229 -3.3554 36 1 3.0739 1.4902 -2.4711 37 1 0.5082 2.0640 1.3813 38 1 1.8775 3.1931 1.2448 39 1 0.8922 -0.1092 2.4182 40 1 2.3296 -0.3329 3.4438 41 1 1.4777 1.3876 5.0131 42 1 0.0403 1.6114 3.9875 43 1 0.3056 0.0615 4.8212 44 1 4.0902 -0.6591 2.9813 45 1 5.2377 -1.8328 4.8081 46 1 5.9301 -0.6231 6.8327 47 1 5.4865 1.7779 7.0612 48 1 6.7389 2.9962 5.6021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600996516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:38 Heat of formation + Delta-G solvation = -44.023239 kcal Electronic energy + Delta-G solvation = -26222.847521 eV Core-core repulsion = 22855.389523 eV Total energy + Delta-G solvation = -3367.457997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69854 -37.80077 -36.63447 -34.88676 -33.83526 -31.18484 -30.69722 -29.94797 -29.46706 -27.72486 -25.30505 -24.41790 -23.54039 -22.97379 -21.45048 -21.04056 -19.22915 -18.45175 -17.61950 -16.46209 -15.94128 -15.39365 -15.21204 -14.93070 -14.49044 -14.14146 -13.83410 -13.62006 -13.28455 -13.23478 -12.99206 -12.75452 -12.45798 -12.33497 -12.17605 -12.08681 -11.89237 -11.77807 -11.61396 -11.27769 -11.22635 -11.08949 -10.91048 -10.75223 -10.68462 -10.48180 -10.38974 -10.32139 -10.27801 -10.06134 -9.56385 -8.99598 -8.70957 -8.05206 -7.68935 -7.61726 -7.21476 -4.47986 2.40685 2.73312 3.17864 3.27000 3.37385 3.65487 3.83631 4.03181 4.55922 4.86872 4.88175 4.95712 5.21551 5.27702 5.31452 5.37673 5.38696 5.45096 5.60799 5.66644 5.71593 5.79645 5.82452 5.87848 5.88946 5.93779 5.95871 6.03327 6.07048 6.15600 6.19412 6.21894 6.27077 6.30733 6.40782 6.50152 6.54330 6.63786 6.76714 6.99378 7.19202 7.28826 7.51885 7.63147 7.72385 7.82206 8.03575 8.17928 8.24196 8.66869 8.80950 9.21187 10.04575 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.004857 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.650312 B = 5763.843008 C = 6546.512127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.118 4.118 5 C -0.150 4.150 6 C 0.120 3.880 7 N -0.619 5.619 8 C 0.100 3.900 9 C -0.168 4.168 10 C 0.586 3.414 11 O -0.538 6.538 12 C -0.247 4.247 13 C -0.051 4.051 14 C -0.256 4.256 15 C -0.076 4.076 16 C -0.205 4.205 17 C 0.129 3.871 18 C -0.496 4.496 19 H 0.076 0.924 20 C 0.041 3.959 21 N -0.787 5.787 22 Si 1.065 2.935 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 -6.088 -8.076 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.123 4.123 4 C -0.156 4.156 5 C -0.207 4.207 6 C -0.003 4.003 7 N -0.353 5.353 8 C -0.023 4.023 9 C -0.227 4.227 10 C 0.378 3.622 11 O -0.414 6.414 12 C -0.251 4.251 13 C -0.069 4.069 14 C -0.275 4.275 15 C -0.095 4.095 16 C -0.224 4.224 17 C 0.125 3.875 18 C -0.523 4.523 19 H 0.094 0.906 20 C -0.182 4.182 21 N -0.410 5.410 22 Si 0.888 3.112 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.122 0.878 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.044 -4.239 -7.451 13.205 hybrid contribution -0.492 -1.540 -0.922 1.861 sum -10.536 -5.779 -8.373 14.646 Atomic orbital electron populations 1.21919 0.96291 1.01227 1.01875 1.21617 0.95697 0.96675 1.01966 1.21593 1.01019 0.95076 0.94612 1.21536 1.00484 0.99555 0.94070 1.21776 1.01289 1.00541 0.97122 1.21395 0.96547 0.97831 0.84542 1.47983 1.20931 1.35041 1.31357 1.21739 0.97128 0.89352 0.94041 1.22170 1.00456 1.01092 0.98959 1.18449 0.79448 0.82771 0.81542 1.90681 1.66052 1.26136 1.58513 1.19428 1.15153 0.94156 0.96368 1.20573 0.97010 0.92742 0.96607 1.20215 1.12017 0.98167 0.97110 1.20708 0.97787 0.94555 0.96403 1.21137 1.08501 0.93637 0.99169 1.17379 0.88478 0.93129 0.88487 1.20484 1.08283 0.92905 1.30663 0.90629 1.27035 0.92997 1.04719 0.93446 1.70385 1.14999 1.23881 1.31699 0.83636 0.76586 0.73824 0.77104 1.19760 1.20033 1.19945 0.92579 0.93167 0.92377 0.92266 0.91527 0.90914 0.91780 0.91976 0.92747 0.93147 0.92791 0.91268 0.90344 0.91030 0.89506 0.91381 0.93290 0.92396 0.88933 0.88954 0.88984 0.87792 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.50 37.16 0.32 -1.18 16 2 C -0.12 -1.40 4.81 -26.73 -0.13 -1.53 16 3 C -0.10 -1.38 2.39 -90.62 -0.22 -1.60 16 4 C -0.12 -1.33 5.09 -26.73 -0.14 -1.46 16 5 C -0.15 -1.51 9.47 37.16 0.35 -1.16 16 6 C 0.12 1.84 4.75 -4.04 -0.02 1.82 16 7 N -0.62 -11.08 2.31 -174.95 -0.40 -11.49 16 8 C 0.10 1.53 4.74 -4.04 -0.02 1.51 16 9 C -0.17 -2.56 10.18 37.16 0.38 -2.18 16 10 C 0.59 13.54 6.29 -12.52 -0.08 13.46 16 11 O -0.54 -14.43 15.87 5.26 0.08 -14.35 16 12 C -0.25 -5.90 4.76 -104.37 -0.50 -6.40 16 13 C -0.05 -1.08 7.61 -39.22 -0.30 -1.38 16 14 C -0.26 -5.33 10.03 -39.37 -0.39 -5.72 16 15 C -0.08 -1.66 10.01 -39.60 -0.40 -2.06 16 16 C -0.21 -5.06 8.04 -38.88 -0.31 -5.37 16 17 C 0.13 3.37 5.12 -106.54 -0.55 2.82 16 18 C -0.50 -13.44 7.78 -37.81 -0.29 -13.73 16 19 H 0.08 2.11 7.48 -52.49 -0.39 1.71 16 20 C 0.04 1.06 4.92 -17.30 -0.09 0.98 16 21 N -0.79 -21.33 12.70 55.56 0.71 -20.63 16 22 Si 1.07 22.36 30.00 -169.99 -5.10 17.26 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H 0.06 0.50 6.58 -51.93 -0.34 0.15 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.57 5.54 -51.92 -0.29 0.29 16 29 H 0.06 0.64 6.80 -51.93 -0.35 0.29 16 30 H 0.07 0.84 5.75 -51.93 -0.30 0.54 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.51 6.88 -51.93 -0.36 0.15 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.90 6.10 -51.93 -0.32 0.58 16 38 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 39 H 0.07 0.89 5.01 -51.93 -0.26 0.63 16 40 H 0.09 1.41 4.50 -51.93 -0.23 1.18 16 41 H 0.07 1.27 7.89 -51.93 -0.41 0.86 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.74 7.29 -52.49 -0.38 1.36 16 45 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 46 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.10 2.62 7.12 -52.48 -0.37 2.25 16 48 H 0.30 8.36 6.88 -40.82 -0.28 8.08 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -29.35 367.30 -9.15 -38.51 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.60 Total: 8.33 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.38 Total: -23.17 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.30 Total: -32.12 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.10 Total: 17.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.35 -9.15 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600996516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.518 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds