Wall clock time and date at job start Tue Mar 31 2020 08:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47457 * 302.92628 * 3 2 1 5 5 C 1.52998 * 109.47058 * 296.77253 * 4 3 2 6 6 C 1.52994 * 109.47143 * 62.93015 * 3 2 1 7 7 N 1.46507 * 109.47107 * 64.99587 * 6 3 2 8 8 C 1.46499 * 119.99904 * 270.00202 * 7 6 3 9 9 C 1.53005 * 109.46941 * 264.04290 * 8 7 6 10 10 C 1.34778 * 119.99935 * 90.00161 * 7 6 3 11 11 O 1.21615 * 119.99704 * 4.74633 * 10 7 6 12 12 C 1.47426 * 119.99808 * 184.74665 * 10 7 6 13 13 C 1.39231 * 120.28230 * 55.00215 * 12 10 7 14 14 C 1.38221 * 120.08651 * 180.27464 * 13 12 10 15 15 C 1.38821 * 120.68387 * 359.69836 * 14 13 12 16 16 C 1.37600 * 120.56698 * 359.97438 * 15 14 13 17 17 C 1.40706 * 119.88245 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.33036 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00049 * 214.12272 * 18 17 16 20 20 C 1.40277 * 119.99442 * 34.12548 * 18 17 16 21 21 N 1.30625 * 120.00404 * 24.34525 * 20 18 17 22 22 Si 1.86802 * 119.99462 * 204.34611 * 20 18 17 23 23 H 1.48498 * 109.46837 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47127 * 299.99692 * 22 20 18 25 25 H 1.48496 * 109.47420 * 59.99953 * 22 20 18 26 26 H 1.09002 * 109.47089 * 64.82785 * 1 2 3 27 27 H 1.08997 * 109.47356 * 184.83909 * 1 2 3 28 28 H 1.09008 * 109.46731 * 304.83596 * 1 2 3 29 29 H 1.09002 * 109.46761 * 240.00325 * 2 1 3 30 30 H 1.08997 * 109.47648 * 120.00344 * 2 1 3 31 31 H 1.09006 * 109.46752 * 182.93070 * 3 2 1 32 32 H 1.08998 * 109.46750 * 56.77042 * 4 3 2 33 33 H 1.08994 * 109.47202 * 176.77266 * 4 3 2 34 34 H 1.09001 * 109.47707 * 65.82483 * 5 4 3 35 35 H 1.09004 * 109.46869 * 185.82394 * 5 4 3 36 36 H 1.08997 * 109.47271 * 305.82593 * 5 4 3 37 37 H 1.09000 * 109.47033 * 304.99714 * 6 3 2 38 38 H 1.09001 * 109.47069 * 184.99762 * 6 3 2 39 39 H 1.08994 * 109.47539 * 24.04278 * 8 7 6 40 40 H 1.08994 * 109.46953 * 144.04996 * 8 7 6 41 41 H 1.09001 * 109.47389 * 300.00364 * 9 8 7 42 42 H 1.09006 * 109.47101 * 60.00397 * 9 8 7 43 43 H 1.08997 * 109.46959 * 179.97438 * 9 8 7 44 44 H 1.07993 * 119.95641 * 359.97438 * 13 12 10 45 45 H 1.08004 * 119.65828 * 179.71568 * 14 13 12 46 46 H 1.07997 * 119.71977 * 180.02562 * 15 14 13 47 47 H 1.08004 * 120.05960 * 180.02562 * 16 15 14 48 48 H 0.97005 * 119.99856 * 3.43002 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4708 2.1848 -1.2108 5 6 1.9850 1.5336 -2.4962 6 6 1.5911 2.1422 1.2844 7 7 2.2318 1.5045 2.4374 8 6 1.5761 0.3809 3.1110 9 6 0.7938 0.8974 4.3202 10 6 3.4244 1.9516 2.8783 11 8 3.9280 2.9375 2.3749 12 6 4.1183 1.2454 3.9706 13 6 4.3893 -0.1163 3.8657 14 6 5.0351 -0.7755 4.8948 15 6 5.4262 -0.0926 6.0384 16 6 5.1782 1.2546 6.1681 17 6 4.5224 1.9494 5.1351 18 6 4.2632 3.3288 5.2583 19 1 3.3660 3.7501 4.8295 20 6 5.1708 4.1549 5.9378 21 7 6.4247 3.8033 6.0389 22 14 4.5859 5.7579 6.6979 23 1 5.7300 6.4415 7.3530 24 1 4.0279 6.6344 5.6368 25 1 3.5351 5.4726 7.7076 26 1 -0.3633 0.4371 -0.9301 27 1 -0.3634 -1.0240 0.0867 28 1 -0.3633 0.5871 0.8436 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1288 1.4429 -0.0525 32 1 0.3822 2.1350 -1.1886 33 1 1.7875 3.2272 -1.1797 34 1 1.5830 0.5237 -2.5780 35 1 1.6646 2.1229 -3.3554 36 1 3.0739 1.4902 -2.4711 37 1 0.5082 2.0640 1.3813 38 1 1.8775 3.1931 1.2448 39 1 0.8922 -0.1092 2.4182 40 1 2.3296 -0.3329 3.4438 41 1 1.4777 1.3876 5.0131 42 1 0.0403 1.6114 3.9875 43 1 0.3056 0.0615 4.8212 44 1 4.0902 -0.6591 2.9813 45 1 5.2377 -1.8328 4.8081 46 1 5.9301 -0.6231 6.8327 47 1 5.4865 1.7779 7.0612 48 1 6.7389 2.9962 5.6021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600996516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:37 Heat of formation + Delta-G solvation = -58.408488 kcal Electronic energy + Delta-G solvation = -26223.471312 eV Core-core repulsion = 22855.389523 eV Total energy + Delta-G solvation = -3368.081789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30247 -39.32100 -38.22442 -36.38756 -35.68979 -32.23836 -31.95338 -31.59169 -31.30606 -28.97645 -27.13466 -25.62104 -24.90242 -24.05320 -23.07186 -22.85567 -20.60682 -19.88529 -19.38695 -18.02123 -17.36966 -16.84947 -16.59456 -16.41440 -16.00806 -15.76628 -15.29386 -15.15692 -14.67967 -14.42596 -14.32762 -14.22176 -13.97875 -13.81350 -13.75822 -13.36480 -13.07126 -12.99336 -12.79196 -12.78872 -12.59616 -12.49190 -12.27823 -12.07162 -12.02896 -12.01374 -11.84397 -11.50203 -11.43030 -11.29049 -11.28071 -10.91335 -10.51067 -9.68016 -9.51261 -9.44110 -9.17117 -6.49494 0.56661 0.89164 1.43068 1.57416 1.72488 1.96775 2.24425 2.28657 2.66352 3.45760 3.76367 3.85707 3.98594 4.04257 4.13068 4.23209 4.30848 4.37828 4.38682 4.42343 4.55004 4.56332 4.58467 4.69836 4.77807 4.80295 4.84491 4.89339 4.89989 4.97166 4.99759 5.07909 5.11602 5.12696 5.28653 5.31542 5.34037 5.36476 5.37744 5.42603 5.60859 5.63912 5.73772 5.74721 5.86390 5.91840 6.15828 6.31707 6.54349 6.75712 6.85753 7.45925 8.01234 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.004857 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.650312 B = 5763.843008 C = 6546.512127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.096 4.096 4 C -0.115 4.115 5 C -0.147 4.147 6 C 0.117 3.883 7 N -0.606 5.606 8 C 0.098 3.902 9 C -0.164 4.164 10 C 0.579 3.421 11 O -0.591 6.591 12 C -0.256 4.256 13 C -0.051 4.051 14 C -0.235 4.235 15 C -0.075 4.075 16 C -0.224 4.224 17 C 0.105 3.895 18 C -0.535 4.535 19 H 0.051 0.949 20 C 0.005 3.995 21 N -0.813 5.813 22 Si 1.111 2.889 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.087 0.913 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -8.972 -9.019 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.116 4.116 4 C -0.153 4.153 5 C -0.204 4.204 6 C -0.005 4.005 7 N -0.338 5.338 8 C -0.024 4.024 9 C -0.222 4.222 10 C 0.371 3.629 11 O -0.472 6.472 12 C -0.261 4.261 13 C -0.070 4.070 14 C -0.254 4.254 15 C -0.093 4.093 16 C -0.243 4.243 17 C 0.102 3.898 18 C -0.563 4.563 19 H 0.069 0.931 20 C -0.211 4.211 21 N -0.436 5.436 22 Si 0.928 3.072 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.142 0.858 47 H 0.105 0.895 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.429 -7.180 -8.400 16.631 hybrid contribution 0.166 -0.908 -0.747 1.188 sum -12.262 -8.088 -9.147 17.304 Atomic orbital electron populations 1.21903 0.94212 1.02405 1.02458 1.21588 0.97380 0.94526 1.02034 1.21486 0.98817 0.96959 0.94315 1.21524 1.01682 0.98464 0.93641 1.21753 1.00368 1.01469 0.96817 1.21610 0.98045 0.96239 0.84641 1.47952 1.19263 1.35105 1.31498 1.21984 0.97419 0.88183 0.94796 1.22128 0.99798 1.02132 0.98142 1.18512 0.80848 0.82253 0.81304 1.90644 1.67901 1.28331 1.60306 1.19742 1.14880 0.95520 0.95938 1.20917 0.96382 0.91699 0.97971 1.20745 1.08964 1.00053 0.95640 1.21091 0.96989 0.93446 0.97820 1.21120 1.09611 0.95031 0.98571 1.17693 0.89151 0.93304 0.89668 1.20428 1.08407 0.94067 1.33444 0.93117 1.28324 0.92428 1.07260 0.93081 1.70514 1.15537 1.23717 1.33823 0.83098 0.76855 0.70334 0.76878 1.18825 1.19807 1.17909 0.91444 0.91567 0.92511 0.91284 0.92466 0.94744 0.89556 0.93521 0.91338 0.91763 0.94281 0.87977 0.93552 0.87072 0.90136 0.95760 0.92294 0.89382 0.85890 0.84713 0.85798 0.89461 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.50 71.98 0.61 -1.63 16 2 C -0.12 -2.35 4.81 30.60 0.15 -2.20 16 3 C -0.10 -2.50 2.39 -10.79 -0.03 -2.52 16 4 C -0.12 -2.43 5.09 30.59 0.16 -2.27 16 5 C -0.15 -2.68 9.47 71.98 0.68 -2.00 16 6 C 0.12 3.56 4.75 86.38 0.41 3.97 16 7 N -0.61 -21.74 2.31 -825.68 -1.91 -23.64 16 8 C 0.10 2.76 4.74 86.38 0.41 3.17 16 9 C -0.16 -4.73 10.18 71.98 0.73 -3.99 16 10 C 0.58 27.89 6.29 86.66 0.54 28.43 16 11 O -0.59 -33.96 15.87 -4.08 -0.06 -34.03 16 12 C -0.26 -12.57 4.76 -19.70 -0.09 -12.66 16 13 C -0.05 -2.09 7.61 22.50 0.17 -1.92 16 14 C -0.24 -9.04 10.03 22.41 0.22 -8.81 16 15 C -0.08 -3.17 10.01 22.26 0.22 -2.95 16 16 C -0.22 -11.36 8.04 22.72 0.18 -11.18 16 17 C 0.11 5.75 5.12 -21.11 -0.11 5.65 16 18 C -0.54 -31.05 7.78 23.42 0.18 -30.87 16 19 H 0.05 3.08 7.48 -2.91 -0.02 3.06 16 20 C 0.01 0.28 4.92 85.37 0.42 0.70 16 21 N -0.81 -46.66 12.70 21.88 0.28 -46.38 16 22 Si 1.11 47.26 30.00 68.60 2.06 49.31 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 26 H 0.07 0.87 6.58 -2.39 -0.02 0.85 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.85 5.54 -2.38 -0.01 0.84 16 29 H 0.07 1.27 6.80 -2.39 -0.02 1.25 16 30 H 0.06 1.25 5.75 -2.39 -0.01 1.23 16 31 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.09 1.45 6.30 -2.39 -0.02 1.44 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.06 6.88 -2.39 -0.02 1.05 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 2.43 6.10 -2.39 -0.01 2.41 16 38 H 0.05 1.72 7.36 -2.39 -0.02 1.70 16 39 H 0.11 2.30 5.01 -2.39 -0.01 2.29 16 40 H 0.08 2.41 4.50 -2.39 -0.01 2.40 16 41 H 0.02 0.90 7.89 -2.39 -0.02 0.88 16 42 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.12 4.25 7.29 -2.91 -0.02 4.23 16 45 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 46 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 47 H 0.09 4.63 7.12 -2.91 -0.02 4.61 16 48 H 0.28 16.74 6.88 -92.70 -0.64 16.10 16 Total: -1.00 -70.82 367.30 6.31 -64.51 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 1.07 Total: 31.32 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.87 Total: -41.09 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.63 Total: -70.02 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.06 Total: -34.03 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.06 Total: 49.31 kcal Total: -70.82 6.31 -64.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600996516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.103 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds