Wall clock time and date at job start Tue Mar 31 2020 09:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46766 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47110 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46805 * 55.00123 * 5 4 3 7 7 C 1.52996 * 109.47284 * 174.99853 * 5 4 3 8 8 C 1.53002 * 109.47322 * 185.00139 * 7 5 4 9 9 C 1.52996 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.47190 * 295.00158 * 5 4 3 11 11 C 1.34774 * 120.00217 * 155.00074 * 10 5 4 12 12 O 1.21606 * 120.00039 * 359.97438 * 11 10 5 13 13 C 1.47430 * 120.00106 * 179.97438 * 11 10 5 14 14 C 1.39229 * 120.28351 * 354.15623 * 13 11 10 15 15 C 1.38223 * 120.09079 * 179.72783 * 14 13 11 16 16 C 1.38817 * 120.67777 * 359.97438 * 15 14 13 17 17 C 1.37601 * 120.57170 * 0.02562 * 16 15 14 18 18 C 1.40698 * 119.88255 * 0.02562 * 17 16 15 19 19 C 1.40892 * 120.32932 * 180.02562 * 18 17 16 20 20 H 1.08008 * 120.00175 * 145.79197 * 19 18 17 21 21 C 1.40273 * 119.99909 * 325.79153 * 19 18 17 22 22 N 1.30624 * 119.99921 * 350.76593 * 21 19 18 23 23 Si 1.86799 * 119.99904 * 170.77209 * 21 19 18 24 24 H 1.48504 * 109.47142 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46970 * 119.99990 * 23 21 19 26 26 H 1.48502 * 109.47026 * 239.99901 * 23 21 19 27 27 H 1.09007 * 109.46976 * 300.00046 * 1 2 3 28 28 H 1.08999 * 109.47550 * 59.99635 * 1 2 3 29 29 H 1.08994 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46437 * 240.00496 * 2 1 3 31 31 H 1.08995 * 109.47071 * 120.00420 * 2 1 3 32 32 H 1.08995 * 109.47350 * 60.00585 * 3 2 1 33 33 H 1.08997 * 109.47146 * 299.99777 * 3 2 1 34 34 H 1.08997 * 109.47445 * 60.00049 * 4 3 2 35 35 H 1.08999 * 109.47459 * 300.00146 * 4 3 2 36 36 H 1.08998 * 109.47167 * 305.00271 * 7 5 4 37 37 H 1.08997 * 109.46963 * 65.00016 * 7 5 4 38 38 H 1.08998 * 109.47108 * 300.00168 * 8 7 5 39 39 H 1.08997 * 109.47202 * 60.00024 * 8 7 5 40 40 H 1.09006 * 109.46824 * 59.99697 * 9 8 7 41 41 H 1.08998 * 109.47110 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.47167 * 300.00132 * 9 8 7 43 43 H 0.97002 * 120.00114 * 334.99897 * 10 5 4 44 44 H 1.07996 * 119.95099 * 359.73856 * 14 13 11 45 45 H 1.07995 * 119.65573 * 179.97438 * 15 14 13 46 46 H 1.08005 * 119.71546 * 179.97438 * 16 15 14 47 47 H 1.08005 * 120.06016 * 180.02562 * 17 16 15 48 48 H 0.96994 * 120.00199 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8424 7 6 5.6049 2.8867 0.1251 8 6 6.1047 4.3273 0.2512 9 6 7.6296 4.3290 0.3757 10 7 3.6920 3.5407 -1.2512 11 6 3.5652 4.8816 -1.2981 12 8 3.7725 5.5472 -0.3017 13 6 3.1752 5.5416 -2.5575 14 6 3.0546 4.8009 -3.7302 15 6 2.6833 5.4228 -4.9075 16 6 2.4261 6.7866 -4.9376 17 6 2.5368 7.5450 -3.7948 18 6 2.9143 6.9367 -2.5836 19 6 3.0300 7.7042 -1.4078 20 1 2.7721 7.2711 -0.4525 21 6 3.4803 9.0309 -1.4777 22 7 3.9620 9.4989 -2.5980 23 14 3.3910 10.1282 0.0314 24 1 2.8093 9.3650 1.1647 25 1 4.7569 10.5863 0.3917 26 1 2.5355 11.3058 -0.2628 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 5.8975 2.3218 1.0102 37 1 6.0426 2.4264 -0.7607 38 1 5.8121 4.8921 -0.6339 39 1 5.6670 4.7875 1.1370 40 1 8.0669 3.8689 -0.5104 41 1 7.9856 5.3553 0.4650 42 1 7.9225 3.7641 1.2606 43 1 3.5263 3.0098 -2.0459 44 1 3.2514 3.7391 -3.7200 45 1 2.5923 4.8416 -5.8132 46 1 2.1374 7.2566 -5.8662 47 1 2.3344 8.6054 -3.8276 48 1 4.2730 10.4163 -2.6465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601280331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:47 Heat of formation + Delta-G solvation = -56.377543 kcal Electronic energy + Delta-G solvation = -25478.998489 eV Core-core repulsion = 22111.004769 eV Total energy + Delta-G solvation = -3367.993720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.33398 -37.36699 -36.08273 -34.67172 -33.74269 -32.89625 -30.90978 -29.83290 -29.18902 -27.72122 -25.39235 -24.34423 -22.45952 -21.47940 -21.05651 -20.54133 -20.13644 -19.36692 -17.43704 -16.26308 -15.98715 -15.23767 -15.21710 -14.71945 -14.23699 -14.11801 -13.78809 -13.62017 -13.42274 -13.06551 -12.89727 -12.75391 -12.68689 -12.36457 -12.19453 -11.74895 -11.56000 -11.50602 -11.38258 -11.14562 -11.10232 -11.00282 -10.81804 -10.74274 -10.62220 -10.53683 -10.47059 -10.14965 -10.01486 -9.97812 -9.62997 -9.25180 -8.37158 -8.14292 -7.55168 -7.31658 -6.76723 -4.34983 2.40466 2.82446 3.12388 3.21792 3.24021 4.00263 4.05508 4.22855 4.64324 4.72020 4.92267 5.03330 5.19712 5.30946 5.38056 5.46207 5.58202 5.66049 5.66906 5.74017 5.76463 5.84881 5.87194 5.93674 6.00278 6.02012 6.05857 6.13848 6.15756 6.23972 6.27634 6.31729 6.38937 6.43778 6.51367 6.65849 6.76387 6.98679 7.01631 7.14201 7.22761 7.33755 7.49831 7.65835 7.92218 8.02337 8.21126 8.47287 8.70954 8.86481 8.93756 9.50531 10.18831 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004827 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.005273 B = 5799.631297 C = 6723.539767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.124 4.124 5 C 0.148 3.852 6 H 0.083 0.917 7 C -0.126 4.126 8 C -0.121 4.121 9 C -0.149 4.149 10 N -0.741 5.741 11 C 0.566 3.434 12 O -0.532 6.532 13 C -0.261 4.261 14 C -0.058 4.058 15 C -0.247 4.247 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.146 3.854 19 C -0.415 4.415 20 H 0.106 0.894 21 C 0.070 3.930 22 N -0.794 5.794 23 Si 0.914 3.086 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.389 0.611 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.116 0.884 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -13.017 3.463 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.162 4.162 5 C 0.042 3.958 6 H 0.101 0.899 7 C -0.164 4.164 8 C -0.158 4.158 9 C -0.207 4.207 10 N -0.395 5.395 11 C 0.359 3.641 12 O -0.410 6.410 13 C -0.266 4.266 14 C -0.077 4.077 15 C -0.266 4.266 16 C -0.115 4.115 17 C -0.168 4.168 18 C 0.142 3.858 19 C -0.443 4.443 20 H 0.124 0.876 21 C -0.148 4.148 22 N -0.420 5.420 23 Si 0.739 3.261 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.223 0.777 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.134 0.866 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.225 -12.308 4.117 12.981 hybrid contribution 0.125 0.244 -0.026 0.276 sum -0.100 -12.064 4.091 12.739 Atomic orbital electron populations 1.21779 0.96075 1.01188 1.02037 1.21532 0.95772 0.97186 1.01572 1.21618 0.95093 0.96239 1.02863 1.21871 0.95895 0.96173 1.02277 1.20844 0.93856 0.92122 0.88929 0.89914 1.22027 0.95685 0.97814 1.00921 1.21595 0.94018 0.96107 1.04076 1.21794 0.97330 1.01114 1.00451 1.46084 1.73662 1.07610 1.12183 1.18318 0.76141 0.80563 0.89030 1.90680 1.50426 1.63281 1.36655 1.19520 1.19138 0.95813 0.92080 1.20649 0.97495 0.96523 0.93015 1.20269 1.14690 0.94974 0.96677 1.20790 0.99744 0.93918 0.97063 1.21353 1.03347 0.99464 0.92657 1.17482 0.85823 0.89515 0.92987 1.20196 1.33814 0.94273 0.96052 0.87633 1.26100 0.92983 0.98342 0.97381 1.69723 1.28763 1.16544 1.26930 0.86149 0.78717 0.79252 0.82020 1.18061 1.19966 1.19983 0.92805 0.92614 0.93122 0.92255 0.92382 0.91979 0.91408 0.91825 0.91140 0.92277 0.92504 0.90501 0.91657 0.93514 0.93079 0.93702 0.77685 0.89373 0.89256 0.89212 0.86580 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.36 5.10 -26.73 -0.14 -1.50 16 4 C -0.12 -1.37 4.75 -26.73 -0.13 -1.50 16 5 C 0.15 2.15 2.26 -67.93 -0.15 2.00 16 6 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 7 C -0.13 -1.77 4.89 -26.73 -0.13 -1.90 16 8 C -0.12 -2.07 4.53 -26.73 -0.12 -2.19 16 9 C -0.15 -2.19 9.91 37.16 0.37 -1.83 16 10 N -0.74 -12.53 4.43 -54.88 -0.24 -12.77 16 11 C 0.57 12.48 6.28 -12.52 -0.08 12.40 16 12 O -0.53 -13.16 10.73 5.27 0.06 -13.10 16 13 C -0.26 -6.24 5.92 -104.36 -0.62 -6.86 16 14 C -0.06 -1.22 9.52 -39.22 -0.37 -1.60 16 15 C -0.25 -5.24 10.03 -39.37 -0.39 -5.64 16 16 C -0.10 -2.18 10.01 -39.60 -0.40 -2.57 16 17 C -0.15 -3.78 8.62 -38.89 -0.34 -4.12 16 18 C 0.15 3.88 5.51 -106.54 -0.59 3.29 16 19 C -0.42 -11.28 7.68 -37.81 -0.29 -11.57 16 20 H 0.11 2.97 5.91 -52.48 -0.31 2.66 16 21 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 22 N -0.79 -20.63 11.14 55.56 0.62 -20.01 16 23 Si 0.91 19.71 29.57 -169.99 -5.03 14.69 16 24 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.61 5.64 -51.93 -0.29 1.32 16 39 H 0.06 1.21 7.84 -51.93 -0.41 0.81 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.39 5.86 6.67 -40.82 -0.27 5.59 16 44 H 0.09 1.55 6.44 -52.49 -0.34 1.21 16 45 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.12 3.02 6.60 -52.48 -0.35 2.67 16 48 H 0.28 6.63 8.29 -40.82 -0.34 6.30 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -28.17 378.00 -10.39 -38.57 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.24 Total: 11.20 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.26 Total: -24.26 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.38 Total: -32.78 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.06 Total: -13.10 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.17 -10.39 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601280331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.812 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds