Wall clock time and date at job start Tue Mar 31 2020 09:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46766 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47110 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46805 * 55.00123 * 5 4 3 7 7 C 1.52996 * 109.47284 * 174.99853 * 5 4 3 8 8 C 1.53002 * 109.47322 * 185.00139 * 7 5 4 9 9 C 1.52996 * 109.47322 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.47190 * 295.00158 * 5 4 3 11 11 C 1.34774 * 120.00217 * 155.00074 * 10 5 4 12 12 O 1.21606 * 120.00039 * 359.97438 * 11 10 5 13 13 C 1.47430 * 120.00106 * 179.97438 * 11 10 5 14 14 C 1.39229 * 120.28351 * 354.15623 * 13 11 10 15 15 C 1.38223 * 120.09079 * 179.72783 * 14 13 11 16 16 C 1.38817 * 120.67777 * 359.97438 * 15 14 13 17 17 C 1.37601 * 120.57170 * 0.02562 * 16 15 14 18 18 C 1.40698 * 119.88255 * 0.02562 * 17 16 15 19 19 C 1.40892 * 120.32932 * 180.02562 * 18 17 16 20 20 H 1.08008 * 120.00175 * 145.79197 * 19 18 17 21 21 C 1.40273 * 119.99909 * 325.79153 * 19 18 17 22 22 N 1.30624 * 119.99921 * 350.76593 * 21 19 18 23 23 Si 1.86799 * 119.99904 * 170.77209 * 21 19 18 24 24 H 1.48504 * 109.47142 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46970 * 119.99990 * 23 21 19 26 26 H 1.48502 * 109.47026 * 239.99901 * 23 21 19 27 27 H 1.09007 * 109.46976 * 300.00046 * 1 2 3 28 28 H 1.08999 * 109.47550 * 59.99635 * 1 2 3 29 29 H 1.08994 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46437 * 240.00496 * 2 1 3 31 31 H 1.08995 * 109.47071 * 120.00420 * 2 1 3 32 32 H 1.08995 * 109.47350 * 60.00585 * 3 2 1 33 33 H 1.08997 * 109.47146 * 299.99777 * 3 2 1 34 34 H 1.08997 * 109.47445 * 60.00049 * 4 3 2 35 35 H 1.08999 * 109.47459 * 300.00146 * 4 3 2 36 36 H 1.08998 * 109.47167 * 305.00271 * 7 5 4 37 37 H 1.08997 * 109.46963 * 65.00016 * 7 5 4 38 38 H 1.08998 * 109.47108 * 300.00168 * 8 7 5 39 39 H 1.08997 * 109.47202 * 60.00024 * 8 7 5 40 40 H 1.09006 * 109.46824 * 59.99697 * 9 8 7 41 41 H 1.08998 * 109.47110 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.47167 * 300.00132 * 9 8 7 43 43 H 0.97002 * 120.00114 * 334.99897 * 10 5 4 44 44 H 1.07996 * 119.95099 * 359.73856 * 14 13 11 45 45 H 1.07995 * 119.65573 * 179.97438 * 15 14 13 46 46 H 1.08005 * 119.71546 * 179.97438 * 16 15 14 47 47 H 1.08005 * 120.06016 * 180.02562 * 17 16 15 48 48 H 0.96994 * 120.00199 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8424 7 6 5.6049 2.8867 0.1251 8 6 6.1047 4.3273 0.2512 9 6 7.6296 4.3290 0.3757 10 7 3.6920 3.5407 -1.2512 11 6 3.5652 4.8816 -1.2981 12 8 3.7725 5.5472 -0.3017 13 6 3.1752 5.5416 -2.5575 14 6 3.0546 4.8009 -3.7302 15 6 2.6833 5.4228 -4.9075 16 6 2.4261 6.7866 -4.9376 17 6 2.5368 7.5450 -3.7948 18 6 2.9143 6.9367 -2.5836 19 6 3.0300 7.7042 -1.4078 20 1 2.7721 7.2711 -0.4525 21 6 3.4803 9.0309 -1.4777 22 7 3.9620 9.4989 -2.5980 23 14 3.3910 10.1282 0.0314 24 1 2.8093 9.3650 1.1647 25 1 4.7569 10.5863 0.3917 26 1 2.5355 11.3058 -0.2628 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 5.8975 2.3218 1.0102 37 1 6.0426 2.4264 -0.7607 38 1 5.8121 4.8921 -0.6339 39 1 5.6670 4.7875 1.1370 40 1 8.0669 3.8689 -0.5104 41 1 7.9856 5.3553 0.4650 42 1 7.9225 3.7641 1.2606 43 1 3.5263 3.0098 -2.0459 44 1 3.2514 3.7391 -3.7200 45 1 2.5923 4.8416 -5.8132 46 1 2.1374 7.2566 -5.8662 47 1 2.3344 8.6054 -3.8276 48 1 4.2730 10.4163 -2.6465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601280331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:46 Heat of formation + Delta-G solvation = -69.817286 kcal Electronic energy + Delta-G solvation = -25479.581280 eV Core-core repulsion = 22111.004769 eV Total energy + Delta-G solvation = -3368.576511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92814 -38.97764 -37.50874 -35.77776 -35.57446 -34.30461 -32.27169 -31.65997 -30.74612 -28.84430 -27.26280 -25.41652 -24.09599 -22.84329 -22.45318 -21.62720 -21.46020 -21.03455 -19.29558 -17.91288 -17.35914 -17.03119 -16.27343 -16.07257 -15.94531 -15.56714 -15.20856 -14.94452 -14.76051 -14.48909 -14.32720 -14.15924 -13.98920 -13.68616 -13.51410 -13.31033 -12.89160 -12.85191 -12.80594 -12.58143 -12.46008 -12.35412 -12.27493 -12.00197 -11.94555 -11.82941 -11.76109 -11.46735 -11.43226 -11.35544 -11.14619 -11.13088 -10.12518 -9.70565 -9.34923 -9.18177 -8.65436 -6.32737 0.57787 1.02084 1.32086 1.46645 1.48154 2.20953 2.46115 2.61873 2.83060 3.64790 3.76882 4.08526 4.08921 4.18209 4.25613 4.32372 4.35240 4.43995 4.46419 4.54017 4.61271 4.65771 4.73273 4.82023 4.88752 4.92117 4.95610 4.99547 5.04635 5.11530 5.13139 5.16906 5.22733 5.27375 5.30094 5.36069 5.37876 5.41844 5.47323 5.55693 5.61024 5.65640 5.84955 5.90796 6.09683 6.14150 6.37336 6.69619 6.86799 6.97625 7.09193 7.83191 8.32422 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004827 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.005273 B = 5799.631297 C = 6723.539767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.112 4.112 5 C 0.145 3.855 6 H 0.054 0.946 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.144 4.144 10 N -0.721 5.721 11 C 0.563 3.437 12 O -0.567 6.567 13 C -0.277 4.277 14 C -0.056 4.056 15 C -0.238 4.238 16 C -0.095 4.095 17 C -0.179 4.179 18 C 0.115 3.885 19 C -0.454 4.454 20 H 0.082 0.918 21 C 0.033 3.967 22 N -0.826 5.826 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.269 1.269 26 H -0.256 1.256 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.401 0.599 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -16.398 2.724 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.158 4.158 4 C -0.150 4.150 5 C 0.040 3.960 6 H 0.072 0.928 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.201 4.201 10 N -0.375 5.375 11 C 0.355 3.645 12 O -0.447 6.447 13 C -0.282 4.282 14 C -0.074 4.074 15 C -0.257 4.257 16 C -0.113 4.113 17 C -0.198 4.198 18 C 0.111 3.889 19 C -0.483 4.483 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.453 5.453 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.180 1.180 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.238 0.762 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.374 -15.733 3.353 16.090 hybrid contribution -0.089 1.106 0.108 1.115 sum 0.286 -14.627 3.460 15.033 Atomic orbital electron populations 1.21800 0.96250 1.01903 1.01374 1.21491 0.95621 0.95679 1.02684 1.21597 0.95466 0.97450 1.01297 1.21816 0.95399 0.93387 1.04349 1.21033 0.94505 0.93838 0.86582 0.92818 1.21981 0.94825 0.95826 1.02970 1.21493 0.95897 0.97609 1.00679 1.21745 0.95224 1.00967 1.02191 1.45851 1.72048 1.05860 1.13705 1.18239 0.76029 0.82158 0.88070 1.90666 1.51831 1.64622 1.37624 1.19965 1.18507 0.95531 0.94198 1.21067 0.96062 0.98491 0.91824 1.20779 1.12185 0.94556 0.98145 1.21156 0.98327 0.94777 0.97060 1.21287 1.05702 0.99124 0.93719 1.17854 0.86490 0.91108 0.93419 1.20115 1.36887 0.95789 0.95485 0.90044 1.26737 0.92347 0.99027 1.00052 1.69751 1.30016 1.17183 1.28326 0.85266 0.78980 0.77804 0.78282 1.19389 1.19348 1.17993 0.93408 0.93428 0.91708 0.91125 0.91176 0.93573 0.93126 0.89795 0.88844 0.89312 0.90995 0.94945 0.94333 0.92358 0.94403 0.91131 0.76224 0.85138 0.85174 0.86503 0.88458 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -1.87 5.93 30.59 0.18 -1.69 16 3 C -0.12 -2.50 5.10 30.59 0.16 -2.34 16 4 C -0.11 -2.11 4.75 30.60 0.15 -1.97 16 5 C 0.14 4.04 2.26 44.99 0.10 4.14 16 6 H 0.05 1.84 7.58 -2.38 -0.02 1.82 16 7 C -0.12 -3.07 4.89 30.59 0.15 -2.92 16 8 C -0.12 -4.14 4.53 30.59 0.14 -4.00 16 9 C -0.14 -4.09 9.91 71.98 0.71 -3.37 16 10 N -0.72 -23.84 4.43 -445.80 -1.98 -25.81 16 11 C 0.56 25.61 6.28 86.67 0.54 26.15 16 12 O -0.57 -29.92 10.73 -4.05 -0.04 -29.97 16 13 C -0.28 -13.53 5.92 -19.70 -0.12 -13.64 16 14 C -0.06 -2.25 9.52 22.50 0.21 -2.03 16 15 C -0.24 -9.40 10.03 22.40 0.22 -9.17 16 16 C -0.09 -4.19 10.01 22.26 0.22 -3.96 16 17 C -0.18 -9.40 8.62 22.72 0.20 -9.20 16 18 C 0.11 6.40 5.51 -21.11 -0.12 6.29 16 19 C -0.45 -26.43 7.68 23.41 0.18 -26.25 16 20 H 0.08 5.00 5.91 -2.91 -0.02 4.98 16 21 C 0.03 1.77 5.25 85.37 0.45 2.22 16 22 N -0.83 -45.16 11.14 21.88 0.24 -44.91 16 23 Si 0.97 42.76 29.57 68.60 2.03 44.78 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.21 7.75 -2.39 -0.02 1.19 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 1.40 5.64 -2.39 -0.01 1.39 16 39 H 0.04 1.50 7.84 -2.39 -0.02 1.49 16 40 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.40 11.10 6.67 -92.71 -0.62 10.48 16 44 H 0.13 4.05 6.44 -2.91 -0.02 4.03 16 45 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 46 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 47 H 0.10 5.36 6.60 -2.91 -0.02 5.35 16 48 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 Total: -1.00 -67.31 378.00 4.66 -62.65 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.31 Total: 36.89 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 4.10 Total: -43.63 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.73 Total: -70.73 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.04 Total: -29.97 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.31 4.66 -62.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601280331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.165 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds