Wall clock time and date at job start Tue Mar 31 2020 08:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47455 * 2 1 4 4 C 1.52994 * 109.47316 * 120.00305 * 2 1 3 5 5 C 1.53005 * 109.47265 * 83.32663 * 4 2 1 6 6 C 1.52993 * 109.47297 * 61.88285 * 5 4 2 7 7 C 1.53003 * 109.46762 * 301.88295 * 5 4 2 8 8 C 1.53002 * 109.47039 * 181.88533 * 5 4 2 9 9 N 1.46506 * 109.47033 * 180.02562 * 8 5 4 10 10 C 1.34771 * 119.99899 * 179.97438 * 9 8 5 11 11 O 1.21604 * 120.00303 * 359.97438 * 10 9 8 12 12 C 1.47434 * 119.99857 * 179.97438 * 10 9 8 13 13 C 1.39227 * 120.28376 * 357.65881 * 12 10 9 14 14 C 1.38217 * 120.09567 * 180.27710 * 13 12 10 15 15 C 1.38831 * 120.67574 * 359.70336 * 14 13 12 16 16 C 1.37594 * 120.56696 * 359.97438 * 15 14 13 17 17 C 1.40715 * 119.88465 * 0.02562 * 16 15 14 18 18 C 1.40890 * 120.32917 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00188 * 147.61712 * 18 17 16 20 20 C 1.40279 * 119.99551 * 327.61042 * 18 17 16 21 21 N 1.30618 * 120.00395 * 341.09962 * 20 18 17 22 22 Si 1.86800 * 119.99272 * 161.09833 * 20 18 17 23 23 H 1.48508 * 109.47018 * 269.99748 * 22 20 18 24 24 H 1.48493 * 109.47569 * 30.00077 * 22 20 18 25 25 H 1.48507 * 109.46803 * 150.00371 * 22 20 18 26 26 H 1.08997 * 109.47016 * 184.72376 * 1 2 3 27 27 H 1.09008 * 109.46583 * 304.71984 * 1 2 3 28 28 H 1.08998 * 109.47465 * 64.71649 * 1 2 3 29 29 H 1.09004 * 109.46837 * 240.00319 * 2 1 3 30 30 H 1.08993 * 109.47286 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47223 * 300.00341 * 3 2 1 32 32 H 1.08999 * 109.46886 * 59.99832 * 3 2 1 33 33 H 1.09006 * 109.46973 * 323.32652 * 4 2 1 34 34 H 1.09002 * 109.47202 * 203.32544 * 4 2 1 35 35 H 1.08994 * 109.47480 * 180.02562 * 6 5 4 36 36 H 1.09007 * 109.47148 * 300.00631 * 6 5 4 37 37 H 1.09001 * 109.47047 * 59.99530 * 6 5 4 38 38 H 1.08996 * 109.47164 * 310.25675 * 7 5 4 39 39 H 1.08994 * 109.47305 * 70.25619 * 7 5 4 40 40 H 1.08999 * 109.46939 * 190.25635 * 7 5 4 41 41 H 1.08998 * 109.47357 * 60.00134 * 8 5 4 42 42 H 1.08997 * 109.46904 * 299.99640 * 8 5 4 43 43 H 0.97002 * 119.99858 * 359.97438 * 9 8 5 44 44 H 1.08007 * 119.95149 * 0.02562 * 13 12 10 45 45 H 1.07997 * 119.66484 * 179.71587 * 14 13 12 46 46 H 1.07998 * 119.71819 * 180.02562 * 15 14 13 47 47 H 1.08002 * 120.06337 * 180.02562 * 16 15 14 48 48 H 0.97003 * 120.00121 * 353.38009 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0520 -2.2304 0.9975 6 6 3.0088 -2.5481 -0.1533 7 6 0.6417 -2.6977 0.6319 8 6 2.5174 -2.9547 2.2624 9 7 2.5294 -4.3997 2.0213 10 6 2.9086 -5.2433 3.0016 11 8 3.2412 -4.8051 4.0860 12 6 2.9202 -6.6975 2.7591 13 6 2.4944 -7.2088 1.5361 14 6 2.5015 -8.5731 1.3150 15 6 2.9365 -9.4482 2.3011 16 6 3.3694 -8.9725 3.5174 17 6 3.3722 -7.5878 3.7680 18 6 3.8130 -7.0905 5.0103 19 1 4.3063 -6.1312 5.0637 20 6 3.6110 -7.8413 6.1779 21 7 2.7175 -8.7939 6.1955 22 14 4.6201 -7.4788 7.7075 23 1 5.8572 -8.3003 7.6906 24 1 4.9823 -6.0389 7.7319 25 1 3.8230 -7.8093 8.9161 26 1 -0.3633 -1.0241 0.0846 27 1 -0.3633 0.5854 0.8448 28 1 -0.3634 0.4389 -0.9292 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.3840 -0.4984 2.0907 34 1 3.0509 -0.3829 1.4768 35 1 3.0171 -3.6231 -0.3328 36 1 2.6773 -2.0320 -1.0544 37 1 4.0135 -2.2151 0.1072 38 1 -0.0694 -2.3132 1.3631 39 1 0.3810 -2.3255 -0.3588 40 1 0.6087 -3.7872 0.6311 41 1 1.8357 -2.7285 3.0823 42 1 3.5221 -2.6218 2.5228 43 1 2.2645 -4.7493 1.1561 44 1 2.1542 -6.5386 0.7604 45 1 2.1654 -8.9625 0.3654 46 1 2.9360 -10.5114 2.1116 47 1 3.7065 -9.6605 4.2786 48 1 2.1277 -8.9198 5.4357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601292548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:05 Heat of formation + Delta-G solvation = -59.025524 kcal Electronic energy + Delta-G solvation = -25190.053941 eV Core-core repulsion = 21821.945395 eV Total energy + Delta-G solvation = -3368.108545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05253 -39.80884 -38.59928 -36.17420 -35.67988 -33.56502 -31.78152 -31.14277 -29.18115 -28.05924 -27.51201 -27.14739 -26.50273 -23.98978 -22.76089 -21.33721 -21.11233 -20.09628 -19.59625 -18.16704 -16.92887 -16.56059 -16.49170 -16.09106 -15.88685 -15.79148 -15.54460 -15.19598 -14.83844 -14.59917 -14.33130 -14.19530 -13.95769 -13.84232 -13.69293 -13.18363 -12.94293 -12.91191 -12.81329 -12.68078 -12.50669 -12.47093 -12.40595 -12.07157 -11.95359 -11.78799 -11.69892 -11.46799 -11.44607 -11.14556 -10.99542 -10.94717 -10.32922 -9.97667 -9.60955 -9.51446 -9.09443 -6.47247 0.40278 0.89995 1.45062 1.61523 1.76146 2.26035 2.29775 2.45696 2.73516 3.56725 3.63446 3.82347 3.84128 4.16268 4.18588 4.22622 4.26338 4.30872 4.44680 4.53214 4.62363 4.67456 4.76406 4.82130 4.83722 4.85877 4.87998 4.93431 4.96358 5.01241 5.08223 5.13671 5.13863 5.15723 5.22686 5.32975 5.41699 5.43216 5.47406 5.55889 5.60676 5.65803 5.66179 5.71693 5.89957 5.97379 6.19974 6.33462 6.69413 6.85273 6.93516 7.62437 8.02852 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.003519 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.466096 B = 7954.897102 C = 9048.096886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.062 4.062 6 C -0.143 4.143 7 C -0.148 4.148 8 C 0.134 3.866 9 N -0.721 5.721 10 C 0.555 3.445 11 O -0.583 6.583 12 C -0.284 4.284 13 C -0.041 4.041 14 C -0.245 4.245 15 C -0.072 4.072 16 C -0.228 4.228 17 C 0.095 3.905 18 C -0.511 4.511 19 H 0.082 0.918 20 C -0.003 4.003 21 N -0.817 5.817 22 Si 1.117 2.883 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.404 0.596 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.125 0.875 47 H 0.090 0.910 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 13.525 -14.346 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.200 4.200 7 C -0.204 4.204 8 C 0.010 3.990 9 N -0.376 5.376 10 C 0.348 3.652 11 O -0.465 6.465 12 C -0.289 4.289 13 C -0.059 4.059 14 C -0.264 4.264 15 C -0.090 4.090 16 C -0.247 4.247 17 C 0.091 3.909 18 C -0.539 4.539 19 H 0.100 0.900 20 C -0.218 4.218 21 N -0.441 5.441 22 Si 0.935 3.065 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.191 1.191 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.243 0.757 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.142 0.858 47 H 0.108 0.892 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.046 13.310 -12.047 18.209 hybrid contribution -0.398 0.153 -1.467 1.527 sum -3.444 13.464 -13.514 19.385 Atomic orbital electron populations 1.22394 0.95106 1.03619 1.01573 1.21161 0.96125 0.96000 0.97863 1.21862 1.00867 0.95910 1.01799 1.21660 1.01442 0.92220 0.98578 1.20713 0.96628 0.95550 0.93367 1.21961 0.98570 1.01588 0.97899 1.22223 0.94841 1.00677 1.02697 1.21316 0.99966 0.79662 0.98025 1.45800 1.69969 1.06328 1.15537 1.18473 0.76186 0.87102 0.83474 1.90644 1.50448 1.79231 1.26147 1.19790 1.17741 0.92085 0.99279 1.21115 0.94720 0.95945 0.94153 1.20802 1.12236 0.92783 1.00565 1.21156 0.95586 0.99556 0.92732 1.21225 1.10197 0.94912 0.98399 1.17911 0.87797 0.91908 0.93332 1.21219 1.32732 1.06534 0.93381 0.89994 1.28487 0.96826 0.90572 1.05950 1.70451 1.13129 1.26268 1.34230 0.82994 0.75402 0.77213 0.70895 1.17919 1.20069 1.19079 0.90335 0.93432 0.92405 0.89993 0.92794 0.92101 0.93137 0.92228 0.92007 0.92947 0.89919 0.93025 0.92432 0.89260 0.93480 0.93856 0.93646 0.75736 0.84984 0.84520 0.85755 0.89166 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 8.63 71.98 0.62 -1.65 16 2 C -0.09 -1.31 2.47 -10.79 -0.03 -1.33 16 3 C -0.15 -1.94 9.08 71.98 0.65 -1.28 16 4 C -0.10 -1.81 4.01 30.59 0.12 -1.69 16 5 C -0.06 -1.26 0.56 -52.18 -0.03 -1.29 16 6 C -0.14 -2.59 8.04 71.98 0.58 -2.01 16 7 C -0.15 -2.68 6.65 71.98 0.48 -2.20 16 8 C 0.13 4.07 4.56 86.38 0.39 4.47 16 9 N -0.72 -25.12 4.81 -466.36 -2.24 -27.36 16 10 C 0.55 26.51 7.73 86.67 0.67 27.18 16 11 O -0.58 -32.91 13.51 -4.04 -0.05 -32.97 16 12 C -0.28 -13.99 5.92 -19.70 -0.12 -14.11 16 13 C -0.04 -1.61 9.53 22.50 0.21 -1.40 16 14 C -0.24 -9.33 10.03 22.41 0.22 -9.11 16 15 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 16 C -0.23 -11.71 7.85 22.72 0.18 -11.53 16 17 C 0.09 5.27 5.22 -21.11 -0.11 5.15 16 18 C -0.51 -30.15 7.74 23.42 0.18 -29.97 16 19 H 0.08 5.15 5.79 -2.91 -0.02 5.13 16 20 C 0.00 -0.16 5.06 85.37 0.43 0.27 16 21 N -0.82 -46.18 12.46 21.88 0.27 -45.91 16 22 Si 1.12 48.02 29.98 68.60 2.06 50.08 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H 0.08 1.05 3.78 -2.39 -0.01 1.04 16 27 H 0.05 0.67 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 1.06 5.71 -2.38 -0.01 1.04 16 30 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.14 7.93 -2.38 -0.02 1.13 16 34 H 0.06 1.15 7.92 -2.39 -0.02 1.13 16 35 H 0.05 0.99 6.86 -2.39 -0.02 0.98 16 36 H 0.08 1.13 6.09 -2.38 -0.01 1.12 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.09 7.44 -2.39 -0.02 1.07 16 39 H 0.09 1.23 6.00 -2.39 -0.01 1.22 16 40 H 0.05 0.94 6.63 -2.39 -0.02 0.92 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.40 11.60 4.21 -92.71 -0.39 11.21 16 44 H 0.13 4.02 6.40 -2.91 -0.02 4.00 16 45 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 46 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.09 4.85 6.78 -2.91 -0.02 4.84 16 48 H 0.28 16.51 6.51 -92.71 -0.60 15.91 16 Total: -1.00 -69.00 364.45 5.45 -63.55 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.73 Total: 35.93 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 4.69 Total: -43.32 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.97 Total: -73.27 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.06 Total: 50.08 kcal Total: -69.00 5.45 -63.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601292548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.527 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds