Wall clock time and date at job start Tue Mar 31 2020 08:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53094 * 109.47712 * 120.01946 * 2 1 3 5 5 C 1.53173 * 109.15998 * 177.59053 * 4 2 1 6 6 H 1.09005 * 109.54715 * 62.89016 * 5 4 2 7 7 N 1.46902 * 109.54302 * 183.15278 * 5 4 2 8 8 C 1.46898 * 111.00221 * 205.00280 * 7 5 4 9 9 H 1.09006 * 109.47107 * 324.99525 * 8 7 5 10 10 C 1.53003 * 109.47122 * 204.99903 * 8 7 5 11 11 C 1.50703 * 109.47078 * 65.00191 * 10 8 7 12 12 H 1.08007 * 120.00072 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00075 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47108 * 90.00281 * 15 13 11 17 17 H 1.48500 * 109.46766 * 209.99749 * 15 13 11 18 18 H 1.48499 * 109.47365 * 329.99531 * 15 13 11 19 19 C 1.50696 * 109.47397 * 84.99936 * 8 7 5 20 20 C 1.38232 * 119.99972 * 39.72842 * 19 8 7 21 21 C 1.38236 * 119.99739 * 179.79236 * 20 19 8 22 22 C 1.38231 * 120.00385 * 0.43602 * 21 20 19 23 23 C 1.38236 * 119.99640 * 359.81626 * 22 21 20 24 24 C 1.38228 * 120.00335 * 359.97438 * 23 22 21 25 25 C 1.53177 * 109.03954 * 303.01764 * 5 4 2 26 26 C 1.53095 * 109.16065 * 56.98292 * 25 5 4 27 27 O 1.42898 * 109.48249 * 239.97104 * 2 1 3 28 28 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 31 31 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 32 32 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 34 34 H 1.09001 * 109.52429 * 297.49386 * 4 2 1 35 35 H 1.08998 * 109.52439 * 57.68589 * 4 2 1 36 36 H 1.00898 * 110.99805 * 81.04490 * 7 5 4 37 37 H 1.09001 * 109.47136 * 184.99347 * 10 8 7 38 38 H 1.08994 * 109.47207 * 304.99844 * 10 8 7 39 39 H 0.97000 * 119.99962 * 179.97438 * 14 13 11 40 40 H 1.07994 * 120.00178 * 359.97438 * 20 19 8 41 41 H 1.08004 * 120.00163 * 180.27341 * 21 20 19 42 42 H 1.07996 * 120.00603 * 179.83804 * 22 21 20 43 43 H 1.08006 * 120.00143 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.00509 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.52396 * 176.88606 * 25 5 4 46 46 H 1.09004 * 109.52256 * 297.01451 * 25 5 4 47 47 H 1.08998 * 109.48041 * 62.37029 * 26 25 5 48 48 H 1.09001 * 109.48148 * 182.40798 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2123 6 1 3.9690 0.2437 1.2409 7 7 4.0671 -1.5277 2.3695 8 6 5.4368 -1.1244 2.7145 9 1 5.9855 -0.8850 1.8036 10 6 6.1375 -2.2716 3.4453 11 6 6.2906 -3.4436 2.5103 12 1 5.9243 -3.3770 1.4964 13 6 6.8972 -4.6012 2.9495 14 7 7.3427 -4.6824 4.1842 15 14 7.0864 -6.0541 1.7907 16 1 8.3791 -5.9457 1.0679 17 1 7.0604 -7.3168 2.5719 18 1 5.9700 -6.0549 0.8115 19 6 5.3934 0.0882 3.6082 20 6 4.4322 0.1840 4.5971 21 6 4.3951 1.2943 5.4196 22 6 5.3134 2.3131 5.2475 23 6 6.2713 2.2197 4.2552 24 6 6.3112 1.1074 3.4355 25 6 4.0176 -1.4602 -0.0806 26 6 3.4308 -0.7096 -1.2789 27 8 2.0067 -0.6742 -1.1663 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6770 1.9564 0.8899 32 1 3.1303 1.4422 -0.0005 33 1 1.6770 1.9563 -0.8901 34 1 1.7149 -0.1840 2.1399 35 1 1.6443 -1.7373 1.2713 36 1 4.0141 -2.5212 2.2013 37 1 7.1214 -1.9424 3.7793 38 1 5.5420 -2.5703 4.3079 39 1 7.7692 -5.4969 4.4934 40 1 3.7122 -0.6100 4.7290 41 1 3.6470 1.3672 6.1951 42 1 5.2828 3.1818 5.8884 43 1 6.9891 3.0155 4.1209 44 1 7.0598 1.0343 2.6605 45 1 5.1058 -1.4499 -0.1417 46 1 3.6622 -2.4906 -0.0854 47 1 3.8193 0.3087 -1.2957 48 1 3.7100 -1.2207 -2.2002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601964394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:18 Heat of formation + Delta-G solvation = -41.098705 kcal Electronic energy + Delta-G solvation = -25984.271548 eV Core-core repulsion = 22616.940367 eV Total energy + Delta-G solvation = -3367.331180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02679 -38.84488 -36.24132 -33.59722 -33.32321 -32.10520 -30.43404 -29.64963 -28.59990 -27.39666 -27.14432 -24.56856 -23.24408 -22.13791 -21.87011 -21.18188 -19.65037 -19.00354 -16.63042 -16.13529 -16.03334 -15.95785 -15.32000 -14.76220 -14.68628 -14.48804 -14.21166 -13.79726 -13.73463 -13.19613 -12.96928 -12.88917 -12.74503 -12.38477 -12.18838 -12.09879 -12.06004 -11.88011 -11.59765 -11.31912 -11.11728 -11.04231 -10.93750 -10.85169 -10.68683 -10.62912 -10.43927 -10.36696 -9.87429 -9.59376 -9.32646 -9.20636 -8.47648 -8.41759 -8.08597 -7.73186 -6.07564 -4.11776 1.85042 1.90544 3.26361 3.33878 3.35532 3.82950 4.27511 4.39418 4.61462 4.86321 4.92895 5.00474 5.15515 5.28018 5.32052 5.32812 5.38407 5.40549 5.47317 5.51480 5.58534 5.60123 5.65862 5.70986 5.74968 5.87576 5.95244 6.01308 6.03613 6.11263 6.12724 6.16054 6.23279 6.31134 6.41784 6.47408 6.53577 6.55864 6.71422 6.90495 6.97075 7.20462 7.38171 7.44594 7.52412 7.57555 7.90380 7.97282 8.19253 8.28559 8.93841 9.52880 11.02937 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.006087 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.614549 B = 4599.028402 C = 6924.945120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.111 3.889 3 C -0.178 4.178 4 C -0.126 4.126 5 C 0.090 3.910 6 H 0.072 0.928 7 N -0.674 5.674 8 C 0.128 3.872 9 H 0.040 0.960 10 C 0.029 3.971 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.053 4.053 20 C -0.087 4.087 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.185 4.185 26 C 0.064 3.936 27 O -0.377 6.377 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.359 0.641 37 H 0.022 0.978 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 12.786 -5.274 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.071 3.929 3 C -0.235 4.235 4 C -0.165 4.165 5 C -0.021 4.021 6 H 0.090 0.910 7 N -0.306 5.306 8 C 0.018 3.982 9 H 0.058 0.942 10 C -0.008 4.008 11 C -0.563 4.563 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.053 4.053 20 C -0.106 4.106 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.225 4.225 26 C -0.013 4.013 27 O -0.297 6.297 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.181 0.819 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.712 12.968 -4.796 16.896 hybrid contribution 1.110 -1.176 -1.056 1.932 sum -8.601 11.792 -5.852 15.725 Atomic orbital electron populations 1.21734 0.92750 1.02711 1.02074 1.21500 0.94460 0.91107 0.85803 1.22437 1.02120 0.96634 1.02302 1.22143 0.95793 1.01422 0.97099 1.21582 0.94362 0.97660 0.88499 0.91009 1.60523 1.22644 1.11226 1.36203 1.20634 0.88451 0.93524 0.95563 0.94205 1.19246 0.95341 0.90363 0.95883 1.21121 1.39037 0.98397 0.97795 0.92808 1.24968 0.95404 0.98562 0.94976 1.69964 1.39236 1.27709 1.15759 0.86646 0.78488 0.82287 0.80896 1.20748 1.21182 1.19848 1.20222 0.93992 0.94816 0.96305 1.21046 0.98192 0.97316 0.94007 1.21125 0.99261 0.94767 0.99674 1.20966 0.96704 0.98981 0.98958 1.20965 0.98947 0.98084 0.96572 1.21039 0.99238 0.93944 1.00133 1.22955 1.01762 1.01162 0.96578 1.22505 0.81106 0.99329 0.98369 1.87918 1.21032 1.77496 1.43228 0.92205 0.91873 0.91221 0.91540 0.91887 0.92302 0.90673 0.91175 0.81867 0.95976 0.95384 0.92882 0.85400 0.86925 0.87139 0.86999 0.86811 0.90730 0.90801 0.93283 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.85 37.16 0.33 -1.09 16 2 C 0.11 1.37 1.11 -90.57 -0.10 1.27 16 3 C -0.18 -1.99 7.93 37.16 0.29 -1.69 16 4 C -0.13 -1.72 4.53 -26.59 -0.12 -1.84 16 5 C 0.09 1.36 2.05 -67.53 -0.14 1.22 16 6 H 0.07 1.12 6.12 -51.93 -0.32 0.80 16 7 N -0.67 -12.02 5.29 -100.76 -0.53 -12.55 16 8 C 0.13 2.52 2.01 -68.87 -0.14 2.38 16 9 H 0.04 0.80 7.04 -51.93 -0.37 0.44 16 10 C 0.03 0.71 4.55 -27.88 -0.13 0.58 16 11 C -0.53 -13.79 8.12 -34.44 -0.28 -14.07 16 12 H 0.05 1.36 7.49 -52.48 -0.39 0.97 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.05 -0.96 4.62 -104.62 -0.48 -1.44 16 20 C -0.09 -1.51 9.33 -39.58 -0.37 -1.88 16 21 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 22 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.13 -1.88 10.05 -39.59 -0.40 -2.27 16 24 C -0.12 -2.08 9.67 -39.58 -0.38 -2.47 16 25 C -0.19 -2.77 5.38 -26.59 -0.14 -2.91 16 26 C 0.06 0.84 6.52 37.21 0.24 1.08 16 27 O -0.38 -5.28 10.24 -35.23 -0.36 -5.65 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.75 4.98 -51.93 -0.26 0.49 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 7.08 6.91 -39.29 -0.27 6.81 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.13 2.26 7.71 -52.49 -0.40 1.85 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.11 1.79 8.04 -52.49 -0.42 1.37 16 45 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16 46 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 47 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 48 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -28.36 374.06 -10.45 -38.81 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.20 Total: 9.12 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.71 Total: -26.19 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.20 Total: -37.69 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.36 Total: -5.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.36 -10.45 -38.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601964394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.292 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds