Wall clock time and date at job start Tue Mar 31 2020 08:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53094 * 109.47712 * 120.01946 * 2 1 3 5 5 C 1.53173 * 109.15998 * 177.59053 * 4 2 1 6 6 H 1.09005 * 109.54715 * 62.89016 * 5 4 2 7 7 N 1.46902 * 109.54302 * 183.15278 * 5 4 2 8 8 C 1.46898 * 111.00221 * 205.00280 * 7 5 4 9 9 H 1.09006 * 109.47107 * 324.99525 * 8 7 5 10 10 C 1.53003 * 109.47122 * 204.99903 * 8 7 5 11 11 C 1.50703 * 109.47078 * 65.00191 * 10 8 7 12 12 H 1.08007 * 120.00072 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00075 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47108 * 90.00281 * 15 13 11 17 17 H 1.48500 * 109.46766 * 209.99749 * 15 13 11 18 18 H 1.48499 * 109.47365 * 329.99531 * 15 13 11 19 19 C 1.50696 * 109.47397 * 84.99936 * 8 7 5 20 20 C 1.38232 * 119.99972 * 39.72842 * 19 8 7 21 21 C 1.38236 * 119.99739 * 179.79236 * 20 19 8 22 22 C 1.38231 * 120.00385 * 0.43602 * 21 20 19 23 23 C 1.38236 * 119.99640 * 359.81626 * 22 21 20 24 24 C 1.38228 * 120.00335 * 359.97438 * 23 22 21 25 25 C 1.53177 * 109.03954 * 303.01764 * 5 4 2 26 26 C 1.53095 * 109.16065 * 56.98292 * 25 5 4 27 27 O 1.42898 * 109.48249 * 239.97104 * 2 1 3 28 28 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 31 31 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 32 32 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 34 34 H 1.09001 * 109.52429 * 297.49386 * 4 2 1 35 35 H 1.08998 * 109.52439 * 57.68589 * 4 2 1 36 36 H 1.00898 * 110.99805 * 81.04490 * 7 5 4 37 37 H 1.09001 * 109.47136 * 184.99347 * 10 8 7 38 38 H 1.08994 * 109.47207 * 304.99844 * 10 8 7 39 39 H 0.97000 * 119.99962 * 179.97438 * 14 13 11 40 40 H 1.07994 * 120.00178 * 359.97438 * 20 19 8 41 41 H 1.08004 * 120.00163 * 180.27341 * 21 20 19 42 42 H 1.07996 * 120.00603 * 179.83804 * 22 21 20 43 43 H 1.08006 * 120.00143 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.00509 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.52396 * 176.88606 * 25 5 4 46 46 H 1.09004 * 109.52256 * 297.01451 * 25 5 4 47 47 H 1.08998 * 109.48041 * 62.37029 * 26 25 5 48 48 H 1.09001 * 109.48148 * 182.40798 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2123 6 1 3.9690 0.2437 1.2409 7 7 4.0671 -1.5277 2.3695 8 6 5.4368 -1.1244 2.7145 9 1 5.9855 -0.8850 1.8036 10 6 6.1375 -2.2716 3.4453 11 6 6.2906 -3.4436 2.5103 12 1 5.9243 -3.3770 1.4964 13 6 6.8972 -4.6012 2.9495 14 7 7.3427 -4.6824 4.1842 15 14 7.0864 -6.0541 1.7907 16 1 8.3791 -5.9457 1.0679 17 1 7.0604 -7.3168 2.5719 18 1 5.9700 -6.0549 0.8115 19 6 5.3934 0.0882 3.6082 20 6 4.4322 0.1840 4.5971 21 6 4.3951 1.2943 5.4196 22 6 5.3134 2.3131 5.2475 23 6 6.2713 2.2197 4.2552 24 6 6.3112 1.1074 3.4355 25 6 4.0176 -1.4602 -0.0806 26 6 3.4308 -0.7096 -1.2789 27 8 2.0067 -0.6742 -1.1663 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6770 1.9564 0.8899 32 1 3.1303 1.4422 -0.0005 33 1 1.6770 1.9563 -0.8901 34 1 1.7149 -0.1840 2.1399 35 1 1.6443 -1.7373 1.2713 36 1 4.0141 -2.5212 2.2013 37 1 7.1214 -1.9424 3.7793 38 1 5.5420 -2.5703 4.3079 39 1 7.7692 -5.4969 4.4934 40 1 3.7122 -0.6100 4.7290 41 1 3.6470 1.3672 6.1951 42 1 5.2828 3.1818 5.8884 43 1 6.9891 3.0155 4.1209 44 1 7.0598 1.0343 2.6605 45 1 5.1058 -1.4499 -0.1417 46 1 3.6622 -2.4906 -0.0854 47 1 3.8193 0.3087 -1.2957 48 1 3.7100 -1.2207 -2.2002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601964394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:17 Heat of formation + Delta-G solvation = -55.954233 kcal Electronic energy + Delta-G solvation = -25984.915732 eV Core-core repulsion = 22616.940367 eV Total energy + Delta-G solvation = -3367.975364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17024 -40.10526 -37.64057 -35.19491 -34.51794 -33.72418 -31.66597 -30.94907 -30.19556 -28.54483 -28.17918 -26.29596 -24.41178 -23.68090 -23.20563 -22.38447 -21.07669 -20.13369 -18.57843 -17.47794 -17.16235 -17.09969 -16.70025 -16.46094 -16.04908 -15.68952 -15.38277 -15.12505 -14.95153 -14.55792 -14.43381 -14.08267 -13.96758 -13.85075 -13.50467 -13.23804 -13.17491 -13.02838 -12.92181 -12.78401 -12.64027 -12.50950 -12.45118 -12.18465 -12.04011 -11.96868 -11.84312 -11.73603 -11.46561 -11.14912 -10.92668 -10.60709 -10.42364 -9.68291 -9.43043 -9.19063 -8.20664 -6.31662 0.59670 0.65973 1.37830 1.38671 1.48860 2.38007 2.82972 3.01639 3.10986 3.33254 3.78410 3.85638 3.92864 4.06804 4.12056 4.14236 4.23957 4.28730 4.33834 4.41048 4.44970 4.48012 4.55049 4.69194 4.76856 4.79380 4.81088 4.84833 4.89461 4.90692 4.93345 5.06100 5.07372 5.12161 5.22978 5.24355 5.31026 5.34262 5.42201 5.43754 5.52680 5.68432 5.73562 5.80610 5.89995 6.16224 6.27133 6.35599 6.41574 6.60743 6.82977 7.37282 8.90625 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.006087 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.614549 B = 4599.028402 C = 6924.945120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.108 3.892 3 C -0.174 4.174 4 C -0.119 4.119 5 C 0.094 3.906 6 H 0.071 0.929 7 N -0.672 5.672 8 C 0.145 3.855 9 H 0.031 0.969 10 C 0.042 3.958 11 C -0.530 4.530 12 H 0.061 0.939 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.957 3.043 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.263 1.263 19 C -0.078 4.078 20 C -0.104 4.104 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.181 4.181 26 C 0.068 3.932 27 O -0.389 6.389 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.345 0.655 37 H -0.012 1.012 38 H -0.003 1.003 39 H 0.262 0.738 40 H 0.114 0.886 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 14.765 -6.058 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.231 4.231 4 C -0.158 4.158 5 C -0.016 4.016 6 H 0.089 0.911 7 N -0.303 5.303 8 C 0.035 3.965 9 H 0.049 0.951 10 C 0.005 3.995 11 C -0.568 4.568 12 H 0.079 0.921 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.782 3.218 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.187 1.187 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.221 4.221 26 C -0.009 4.009 27 O -0.309 6.309 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.006 0.994 38 H 0.015 0.985 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.720 14.968 -5.596 19.243 hybrid contribution 1.421 -1.718 -0.744 2.350 sum -9.300 13.251 -6.340 17.386 Atomic orbital electron populations 1.21750 0.91109 1.02810 1.03373 1.21651 0.95706 0.91423 0.84368 1.22399 1.01484 0.95817 1.03385 1.22090 0.94211 1.01122 0.98345 1.21602 0.95492 0.96999 0.87510 0.91075 1.60565 1.21401 1.10423 1.37868 1.20257 0.88761 0.92571 0.94891 0.95147 1.19004 0.93513 0.91968 0.95063 1.21465 1.38217 0.98920 0.98210 0.92124 1.25843 0.95185 1.01579 0.96462 1.70102 1.40461 1.28561 1.17756 0.85566 0.78775 0.78558 0.78868 1.20145 1.21038 1.18712 1.20120 0.95727 0.94875 0.97139 1.21038 0.98150 0.98212 0.94827 1.21428 0.99987 0.93944 0.99446 1.21405 0.95352 0.99532 0.98579 1.21328 0.99417 0.97808 0.95729 1.21194 0.99030 0.94581 1.01062 1.22884 1.00972 1.00624 0.97604 1.22518 0.80855 0.99809 0.97723 1.87915 1.21228 1.77911 1.43817 0.91227 0.92420 0.89608 0.90553 0.92812 0.91129 0.90338 0.92352 0.83459 0.99377 0.98472 0.92869 0.86801 0.84372 0.83524 0.83990 0.86714 0.92024 0.92314 0.92048 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.85 71.98 0.64 -1.87 16 2 C 0.11 2.49 1.11 -10.76 -0.01 2.48 16 3 C -0.17 -3.50 7.93 71.98 0.57 -2.93 16 4 C -0.12 -3.20 4.53 30.68 0.14 -3.06 16 5 C 0.09 2.89 2.05 45.03 0.09 2.98 16 6 H 0.07 2.22 6.12 -2.38 -0.01 2.21 16 7 N -0.67 -25.06 5.29 -472.70 -2.50 -27.56 16 8 C 0.14 6.00 2.01 44.17 0.09 6.09 16 9 H 0.03 1.29 7.04 -2.38 -0.02 1.28 16 10 C 0.04 2.19 4.55 29.85 0.14 2.32 16 11 C -0.53 -28.91 8.12 25.60 0.21 -28.70 16 12 H 0.06 3.16 7.49 -2.91 -0.02 3.13 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 15 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.08 -2.90 4.62 -19.87 -0.09 -2.99 16 20 C -0.10 -3.62 9.33 22.27 0.21 -3.41 16 21 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 22 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 23 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.14 -4.64 9.67 22.27 0.22 -4.42 16 25 C -0.18 -5.49 5.38 30.69 0.17 -5.33 16 26 C 0.07 1.71 6.52 72.01 0.47 2.18 16 27 O -0.39 -10.36 10.24 -148.98 -1.52 -11.88 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.18 4.98 -2.39 -0.01 1.17 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.35 14.35 6.91 -89.70 -0.62 13.73 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.11 4.19 7.71 -2.91 -0.02 4.16 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.11 3.65 8.04 -2.91 -0.02 3.63 16 45 H 0.06 2.00 7.51 -2.39 -0.02 1.99 16 46 H 0.06 1.94 8.08 -2.38 -0.02 1.92 16 47 H 0.06 1.40 6.34 -2.39 -0.02 1.39 16 48 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -63.23 374.06 2.54 -60.69 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.30 Total: 34.10 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.96 Total: -45.42 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.22 Total: -83.33 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.52 Total: -11.88 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.23 2.54 -60.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601964394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.735 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds