Wall clock time and date at job start Tue Mar 31 2020 09:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53004 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46971 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47278 * 305.00244 * 5 4 3 7 7 C 1.53004 * 109.47047 * 65.00147 * 5 4 3 8 8 C 1.52997 * 109.47271 * 57.13748 * 7 5 4 9 9 C 1.52993 * 109.47007 * 185.00180 * 5 4 3 10 10 N 1.46499 * 109.47070 * 177.07228 * 9 5 4 11 11 C 1.34783 * 120.00136 * 174.87070 * 10 9 5 12 12 O 1.21547 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.47883 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.39930 * 120.02392 * 359.72109 * 13 11 10 15 15 C 1.38328 * 120.35780 * 179.78912 * 14 13 11 16 16 C 1.37755 * 120.40952 * 0.47135 * 15 14 13 17 17 C 1.40749 * 120.04221 * 359.78218 * 16 15 14 18 18 C 1.41435 * 120.17855 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00213 * 150.87222 * 18 17 16 20 20 C 1.39941 * 119.99993 * 330.88167 * 18 17 16 21 21 N 1.30822 * 119.99991 * 161.61954 * 20 18 17 22 22 Si 1.86801 * 119.99837 * 341.61091 * 20 18 17 23 23 H 1.48503 * 109.46956 * 95.11646 * 22 20 18 24 24 H 1.48493 * 109.47270 * 215.11361 * 22 20 18 25 25 H 1.48500 * 109.47531 * 335.11774 * 22 20 18 26 26 C 1.38992 * 120.02773 * 180.02562 * 13 11 10 27 27 H 1.08999 * 109.47255 * 300.00335 * 1 2 3 28 28 H 1.09006 * 109.47198 * 60.00298 * 1 2 3 29 29 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47771 * 239.99739 * 2 1 3 31 31 H 1.09006 * 109.47198 * 119.99702 * 2 1 3 32 32 H 1.09002 * 109.46941 * 60.00051 * 3 2 1 33 33 H 1.08994 * 109.47035 * 299.99627 * 3 2 1 34 34 H 1.08999 * 109.47054 * 59.99887 * 4 3 2 35 35 H 1.09003 * 109.47076 * 299.99959 * 4 3 2 36 36 H 1.09004 * 109.46662 * 297.13759 * 7 5 4 37 37 H 1.08997 * 109.46608 * 177.13912 * 7 5 4 38 38 H 1.09001 * 109.46791 * 298.73140 * 8 7 5 39 39 H 1.08997 * 109.47262 * 178.73323 * 8 7 5 40 40 H 1.09002 * 109.47264 * 58.72793 * 8 7 5 41 41 H 1.09000 * 109.47226 * 297.07159 * 9 5 4 42 42 H 1.09001 * 109.47649 * 57.07211 * 9 5 4 43 43 H 0.97000 * 120.00413 * 354.87341 * 10 9 5 44 44 H 1.08005 * 119.81662 * 0.02562 * 14 13 11 45 45 H 1.08001 * 119.79423 * 180.23327 * 15 14 13 46 46 H 1.08007 * 119.97630 * 179.76869 * 16 15 14 47 47 H 0.97003 * 120.00056 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.20181 * 359.94392 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6747 3.5698 1.3068 8 6 4.2247 2.7735 2.4918 9 6 5.6048 2.8867 -0.1251 10 7 6.0874 4.2682 -0.1961 11 6 7.4115 4.5198 -0.2057 12 8 8.2051 3.6006 -0.1550 13 6 7.8986 5.9143 -0.2767 14 6 6.9854 6.9726 -0.3399 15 6 7.4334 8.2799 -0.4022 16 6 8.7832 8.5546 -0.4125 17 6 9.7169 7.5029 -0.3549 18 6 11.1034 7.7816 -0.3658 19 1 11.7928 7.1121 0.1270 20 6 11.5821 8.9252 -1.0151 21 7 12.7755 9.3836 -0.7375 22 14 10.5171 9.7968 -2.2782 23 1 9.7842 10.9103 -1.6238 24 1 11.3767 10.3388 -3.3610 25 1 9.5437 8.8343 -2.8539 26 6 9.2639 6.1744 -0.2872 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 2.5875 3.6139 1.3719 37 1 4.0813 4.5809 1.3284 38 1 3.8006 1.7694 2.4829 39 1 3.9551 3.2735 3.4221 40 1 5.3101 2.7101 2.4146 41 1 6.0412 2.3936 0.7435 42 1 5.8958 2.3533 -1.0301 43 1 5.4540 5.0018 -0.2361 44 1 5.9249 6.7678 -0.3362 45 1 6.7205 9.0899 -0.4468 46 1 9.1253 9.5777 -0.4650 47 1 13.1072 10.1765 -1.1873 48 1 9.9724 5.3605 -0.2426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603726528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:53 Heat of formation + Delta-G solvation = -59.389872 kcal Electronic energy + Delta-G solvation = -24144.747198 eV Core-core repulsion = 20776.622854 eV Total energy + Delta-G solvation = -3368.124345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.64064 -38.18929 -37.15983 -35.09722 -33.74954 -33.20541 -30.73250 -30.30718 -30.02098 -27.97011 -25.34256 -24.62909 -23.95538 -22.58666 -21.29691 -20.67909 -19.96544 -19.32993 -17.82471 -16.38158 -16.35693 -15.74309 -15.66884 -15.38635 -14.68006 -14.64293 -14.29601 -14.01709 -13.72225 -13.65170 -13.23761 -12.86506 -12.75405 -12.74280 -12.66899 -12.47864 -12.31177 -11.99722 -11.67659 -11.58121 -11.47843 -11.20130 -11.04966 -10.95155 -10.79479 -10.67597 -10.63026 -10.53426 -10.44239 -10.00403 -9.71595 -9.41999 -9.12864 -8.77060 -7.86386 -7.76234 -7.01335 -4.55579 1.93048 2.51659 3.04872 3.17167 3.25574 3.54385 3.64563 3.92658 4.41570 4.48641 4.54841 4.61973 4.74861 4.86162 4.88964 5.12907 5.21355 5.28148 5.32217 5.39276 5.42691 5.46294 5.49774 5.58285 5.60848 5.64104 5.71262 5.83108 5.85745 5.89110 5.89395 5.97800 6.02013 6.02777 6.09883 6.14490 6.31275 6.39307 6.66345 6.67435 6.75577 6.97998 7.21339 7.41181 7.50036 7.74976 7.81773 8.03029 8.27731 8.53172 8.69661 8.75196 10.00726 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.002473 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.021923 B =11317.561815 C =11537.119726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.100 4.100 6 H 0.075 0.925 7 C -0.121 4.121 8 C -0.157 4.157 9 C 0.123 3.877 10 N -0.732 5.732 11 C 0.562 3.438 12 O -0.549 6.549 13 C -0.108 4.108 14 C -0.217 4.217 15 C -0.083 4.083 16 C -0.224 4.224 17 C 0.082 3.918 18 C -0.441 4.441 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.803 5.803 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.244 1.244 26 C -0.136 4.136 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.399 0.601 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.286 0.714 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 -10.898 1.034 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.119 4.119 6 H 0.094 0.906 7 C -0.158 4.158 8 C -0.214 4.214 9 C -0.001 4.001 10 N -0.386 5.386 11 C 0.352 3.648 12 O -0.428 6.428 13 C -0.111 4.111 14 C -0.237 4.237 15 C -0.101 4.101 16 C -0.243 4.243 17 C 0.079 3.921 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.137 4.137 21 N -0.426 5.426 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.167 1.167 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.235 0.765 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.097 0.903 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.272 -11.427 1.061 23.295 hybrid contribution -0.627 0.947 -0.558 1.265 sum -20.899 -10.480 0.502 23.385 Atomic orbital electron populations 1.21777 0.96049 1.01459 1.01753 1.21542 0.95703 0.97117 1.01984 1.21646 0.95255 0.96600 1.02193 1.21630 0.95456 0.95628 1.02632 1.21428 0.94644 0.97171 0.98618 0.90637 1.21565 1.00624 0.99460 0.94160 1.21886 1.01762 1.00119 0.97678 1.21367 0.92961 0.83785 1.02015 1.45941 1.07470 1.08370 1.76780 1.18777 0.81472 0.89668 0.74866 1.90694 1.55227 1.46706 1.50166 1.19443 0.94844 0.90566 1.06217 1.20373 0.96388 0.92499 1.14471 1.20505 0.95165 0.95317 0.99118 1.21168 0.93047 0.98058 1.12034 1.17703 0.93643 0.90734 0.90070 1.19526 0.91666 1.06272 1.29489 0.88847 1.26179 0.95319 0.95369 0.96792 1.69691 1.17868 1.19773 1.35296 0.86301 0.79974 0.80047 0.79844 1.19569 1.21697 1.16703 1.21267 0.92949 0.96361 1.05094 0.92812 0.92820 0.92934 0.92104 0.92100 0.91681 0.92081 0.91775 0.91141 0.91753 0.91765 0.92460 0.92961 0.92170 0.91173 0.92153 0.76494 0.88692 0.88325 0.87905 0.90307 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.15 0.37 -0.53 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.81 4.97 -26.73 -0.13 -0.94 16 4 C -0.12 -0.89 4.40 -26.73 -0.12 -1.01 16 5 C -0.10 -0.89 2.21 -90.62 -0.20 -1.09 16 6 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.12 -1.05 5.29 -26.73 -0.14 -1.19 16 8 C -0.16 -1.43 9.20 37.16 0.34 -1.09 16 9 C 0.12 1.52 4.88 -4.05 -0.02 1.50 16 10 N -0.73 -10.80 5.12 -61.24 -0.31 -11.12 16 11 C 0.56 11.13 7.77 -12.31 -0.10 11.03 16 12 O -0.55 -12.57 16.33 5.32 0.09 -12.48 16 13 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 14 C -0.22 -4.20 9.55 -38.92 -0.37 -4.58 16 15 C -0.08 -1.69 10.01 -39.72 -0.40 -2.09 16 16 C -0.22 -5.23 7.17 -38.81 -0.28 -5.51 16 17 C 0.08 2.07 5.12 -106.87 -0.55 1.52 16 18 C -0.44 -11.92 9.57 -37.73 -0.36 -12.28 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 21 N -0.80 -21.16 13.93 55.55 0.77 -20.39 16 22 Si 0.91 20.41 24.50 -169.99 -4.16 16.25 16 23 H -0.27 -5.78 6.68 56.52 0.38 -5.41 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 26 C -0.14 -3.32 9.34 -38.44 -0.36 -3.68 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 6.63 -51.93 -0.34 0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.55 6.13 -51.93 -0.32 0.23 16 36 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 37 H 0.06 0.61 7.09 -51.93 -0.37 0.25 16 38 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 41 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.40 5.07 5.71 -40.82 -0.23 4.84 16 44 H 0.10 1.48 6.38 -52.48 -0.33 1.14 16 45 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.10 2.38 4.63 -52.48 -0.24 2.14 16 47 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 48 H 0.12 2.86 7.64 -52.49 -0.40 2.46 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -28.78 372.90 -9.00 -37.78 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.82 Total: 6.10 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.18 Total: -21.76 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.46 Total: -31.51 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.16 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.78 -9.00 -37.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603726528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.610 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds