Wall clock time and date at job start Tue Mar 31 2020 09:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53004 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46971 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47278 * 305.00244 * 5 4 3 7 7 C 1.53004 * 109.47047 * 65.00147 * 5 4 3 8 8 C 1.52997 * 109.47271 * 57.13748 * 7 5 4 9 9 C 1.52993 * 109.47007 * 185.00180 * 5 4 3 10 10 N 1.46499 * 109.47070 * 177.07228 * 9 5 4 11 11 C 1.34783 * 120.00136 * 174.87070 * 10 9 5 12 12 O 1.21547 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.47883 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.39930 * 120.02392 * 359.72109 * 13 11 10 15 15 C 1.38328 * 120.35780 * 179.78912 * 14 13 11 16 16 C 1.37755 * 120.40952 * 0.47135 * 15 14 13 17 17 C 1.40749 * 120.04221 * 359.78218 * 16 15 14 18 18 C 1.41435 * 120.17855 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00213 * 150.87222 * 18 17 16 20 20 C 1.39941 * 119.99993 * 330.88167 * 18 17 16 21 21 N 1.30822 * 119.99991 * 161.61954 * 20 18 17 22 22 Si 1.86801 * 119.99837 * 341.61091 * 20 18 17 23 23 H 1.48503 * 109.46956 * 95.11646 * 22 20 18 24 24 H 1.48493 * 109.47270 * 215.11361 * 22 20 18 25 25 H 1.48500 * 109.47531 * 335.11774 * 22 20 18 26 26 C 1.38992 * 120.02773 * 180.02562 * 13 11 10 27 27 H 1.08999 * 109.47255 * 300.00335 * 1 2 3 28 28 H 1.09006 * 109.47198 * 60.00298 * 1 2 3 29 29 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47771 * 239.99739 * 2 1 3 31 31 H 1.09006 * 109.47198 * 119.99702 * 2 1 3 32 32 H 1.09002 * 109.46941 * 60.00051 * 3 2 1 33 33 H 1.08994 * 109.47035 * 299.99627 * 3 2 1 34 34 H 1.08999 * 109.47054 * 59.99887 * 4 3 2 35 35 H 1.09003 * 109.47076 * 299.99959 * 4 3 2 36 36 H 1.09004 * 109.46662 * 297.13759 * 7 5 4 37 37 H 1.08997 * 109.46608 * 177.13912 * 7 5 4 38 38 H 1.09001 * 109.46791 * 298.73140 * 8 7 5 39 39 H 1.08997 * 109.47262 * 178.73323 * 8 7 5 40 40 H 1.09002 * 109.47264 * 58.72793 * 8 7 5 41 41 H 1.09000 * 109.47226 * 297.07159 * 9 5 4 42 42 H 1.09001 * 109.47649 * 57.07211 * 9 5 4 43 43 H 0.97000 * 120.00413 * 354.87341 * 10 9 5 44 44 H 1.08005 * 119.81662 * 0.02562 * 14 13 11 45 45 H 1.08001 * 119.79423 * 180.23327 * 15 14 13 46 46 H 1.08007 * 119.97630 * 179.76869 * 16 15 14 47 47 H 0.97003 * 120.00056 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.20181 * 359.94392 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6747 3.5698 1.3068 8 6 4.2247 2.7735 2.4918 9 6 5.6048 2.8867 -0.1251 10 7 6.0874 4.2682 -0.1961 11 6 7.4115 4.5198 -0.2057 12 8 8.2051 3.6006 -0.1550 13 6 7.8986 5.9143 -0.2767 14 6 6.9854 6.9726 -0.3399 15 6 7.4334 8.2799 -0.4022 16 6 8.7832 8.5546 -0.4125 17 6 9.7169 7.5029 -0.3549 18 6 11.1034 7.7816 -0.3658 19 1 11.7928 7.1121 0.1270 20 6 11.5821 8.9252 -1.0151 21 7 12.7755 9.3836 -0.7375 22 14 10.5171 9.7968 -2.2782 23 1 9.7842 10.9103 -1.6238 24 1 11.3767 10.3388 -3.3610 25 1 9.5437 8.8343 -2.8539 26 6 9.2639 6.1744 -0.2872 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 2.5875 3.6139 1.3719 37 1 4.0813 4.5809 1.3284 38 1 3.8006 1.7694 2.4829 39 1 3.9551 3.2735 3.4221 40 1 5.3101 2.7101 2.4146 41 1 6.0412 2.3936 0.7435 42 1 5.8958 2.3533 -1.0301 43 1 5.4540 5.0018 -0.2361 44 1 5.9249 6.7678 -0.3362 45 1 6.7205 9.0899 -0.4468 46 1 9.1253 9.5777 -0.4650 47 1 13.1072 10.1765 -1.1873 48 1 9.9724 5.3605 -0.2426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603726528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:52 Heat of formation + Delta-G solvation = -75.026680 kcal Electronic energy + Delta-G solvation = -24145.425261 eV Core-core repulsion = 20776.622854 eV Total energy + Delta-G solvation = -3368.802408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10639 -39.37085 -38.63361 -35.95638 -35.57406 -34.34208 -32.46821 -31.77631 -30.94366 -28.92873 -27.09722 -25.70084 -24.77741 -23.90298 -22.47248 -21.86855 -21.52037 -20.26135 -19.39458 -18.09982 -17.31326 -17.13926 -16.95024 -16.44919 -16.44351 -15.53486 -15.49548 -15.30437 -15.12858 -14.61940 -14.56914 -14.40940 -13.99284 -13.86686 -13.51933 -13.43665 -13.36786 -13.18346 -13.06687 -12.84455 -12.68681 -12.31625 -12.24811 -12.01800 -11.80229 -11.75635 -11.58236 -11.54404 -11.37126 -11.31005 -11.18064 -11.09530 -10.79528 -10.13689 -9.63647 -9.55096 -8.92554 -6.56165 0.18098 0.73846 1.24965 1.41557 1.48367 1.95660 2.12399 2.22263 2.64995 3.45366 3.70016 3.85355 3.88864 3.98197 4.19519 4.24523 4.26080 4.35603 4.40488 4.46322 4.56521 4.59312 4.64054 4.66967 4.75290 4.87112 4.88915 4.91104 4.93969 4.95991 5.02700 5.12327 5.15504 5.17624 5.23797 5.32064 5.34103 5.37225 5.41934 5.45996 5.50458 5.54883 5.64590 5.65840 5.71257 5.83777 6.10489 6.29167 6.59040 6.65782 6.73104 7.25155 8.16425 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.002473 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.021923 B =11317.561815 C =11537.119726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.088 4.088 6 H 0.089 0.911 7 C -0.119 4.119 8 C -0.158 4.158 9 C 0.119 3.881 10 N -0.706 5.706 11 C 0.559 3.441 12 O -0.590 6.590 13 C -0.113 4.113 14 C -0.183 4.183 15 C -0.081 4.081 16 C -0.226 4.226 17 C 0.065 3.935 18 C -0.488 4.488 19 H 0.048 0.952 20 C 0.044 3.956 21 N -0.848 5.848 22 Si 0.970 3.030 23 H -0.245 1.245 24 H -0.278 1.278 25 H -0.252 1.252 26 C -0.169 4.169 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.414 0.586 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.107 0.893 47 H 0.295 0.705 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.361 -9.955 0.288 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.151 4.151 5 C -0.107 4.107 6 H 0.108 0.892 7 C -0.157 4.157 8 C -0.215 4.215 9 C -0.004 4.004 10 N -0.359 5.359 11 C 0.348 3.652 12 O -0.471 6.471 13 C -0.116 4.116 14 C -0.202 4.202 15 C -0.099 4.099 16 C -0.246 4.246 17 C 0.062 3.938 18 C -0.518 4.518 19 H 0.067 0.933 20 C -0.171 4.171 21 N -0.474 5.474 22 Si 0.792 3.208 23 H -0.170 1.170 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.190 4.190 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.252 0.748 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.578 -10.481 0.329 27.644 hybrid contribution 0.783 0.464 -0.237 0.940 sum -24.795 -10.017 0.092 26.742 Atomic orbital electron populations 1.21774 0.95594 1.01723 1.01928 1.21545 0.96106 0.96966 1.01856 1.21598 0.94126 0.96832 1.02570 1.21607 0.96320 0.94689 1.02498 1.21376 0.91573 0.98289 0.99436 0.89224 1.21584 1.01808 0.98851 0.93414 1.21884 1.00277 1.01052 0.98278 1.21561 0.95535 0.81990 1.01281 1.45754 1.05690 1.10116 1.74316 1.18623 0.82911 0.88546 0.75102 1.90683 1.56722 1.47510 1.52233 1.19724 0.94036 0.92581 1.05252 1.20996 0.98581 0.91324 1.09318 1.21049 0.94520 0.97190 0.97152 1.21386 0.94309 0.97536 1.11353 1.17784 0.93325 0.91817 0.90831 1.19461 0.92390 1.07324 1.32603 0.93330 1.26933 0.96578 0.95632 0.97921 1.69723 1.19517 1.21082 1.37039 0.85442 0.78496 0.79241 0.77660 1.17017 1.20417 1.17542 1.21189 0.94393 0.95546 1.07835 0.92579 0.92675 0.92714 0.92336 0.92220 0.91212 0.91706 0.91968 0.91401 0.89761 0.92194 0.91439 0.92635 0.94485 0.92329 0.92700 0.74786 0.83331 0.83382 0.87541 0.89403 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.32 5.93 30.59 0.18 -1.14 16 3 C -0.11 -1.17 4.97 30.60 0.15 -1.02 16 4 C -0.11 -1.44 4.40 30.60 0.13 -1.30 16 5 C -0.09 -1.27 2.21 -10.79 -0.02 -1.30 16 6 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 7 C -0.12 -1.63 5.29 30.59 0.16 -1.47 16 8 C -0.16 -2.52 9.20 71.98 0.66 -1.86 16 9 C 0.12 2.72 4.88 86.38 0.42 3.14 16 10 N -0.71 -18.84 5.12 -465.94 -2.38 -21.23 16 11 C 0.56 21.60 7.77 86.80 0.67 22.28 16 12 O -0.59 -27.64 16.33 -3.86 -0.06 -27.70 16 13 C -0.11 -4.71 5.87 -20.13 -0.12 -4.83 16 14 C -0.18 -6.19 9.55 22.70 0.22 -5.97 16 15 C -0.08 -2.92 10.01 22.18 0.22 -2.69 16 16 C -0.23 -10.17 7.17 22.77 0.16 -10.01 16 17 C 0.06 3.40 5.12 -21.32 -0.11 3.29 16 18 C -0.49 -28.42 9.57 23.47 0.22 -28.20 16 19 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 20 C 0.04 2.38 5.40 85.26 0.46 2.84 16 21 N -0.85 -47.07 13.93 21.82 0.30 -46.77 16 22 Si 0.97 41.87 24.50 68.60 1.68 43.55 16 23 H -0.25 -9.58 6.68 99.48 0.66 -8.92 16 24 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.25 -11.06 6.86 99.48 0.68 -10.38 16 26 C -0.17 -8.57 9.34 23.01 0.21 -8.36 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.67 6.63 -2.39 -0.02 0.65 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.91 6.13 -2.39 -0.01 0.90 16 36 H 0.08 0.88 6.71 -2.39 -0.02 0.87 16 37 H 0.06 0.88 7.09 -2.39 -0.02 0.87 16 38 H 0.07 0.92 6.34 -2.39 -0.02 0.91 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.04 0.76 6.38 -2.39 -0.02 0.74 16 41 H 0.06 1.52 6.32 -2.39 -0.02 1.51 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.41 8.46 5.71 -92.71 -0.53 7.93 16 44 H 0.15 3.48 6.38 -2.91 -0.02 3.46 16 45 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 46 H 0.11 4.69 4.63 -2.91 -0.01 4.67 16 47 H 0.30 14.59 8.30 -92.71 -0.77 13.82 16 48 H 0.09 4.76 7.64 -2.91 -0.02 4.74 16 Total: -1.00 -68.16 372.90 4.24 -63.92 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.35 Total: 25.54 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 4.35 Total: -37.31 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -2.08 Total: -67.99 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.68 Total: 43.55 kcal Total: -68.16 4.24 -63.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603726528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.108 kcal (2) G-P(sol) polarization free energy of solvation -68.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds