Wall clock time and date at job start Tue Mar 31 2020 08:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47373 * 2 1 4 4 C 1.38283 * 119.97663 * 270.02653 * 3 2 1 5 5 C 1.38246 * 120.11387 * 180.02562 * 4 3 2 6 6 C 1.38157 * 120.05349 * 359.67969 * 5 4 3 7 7 C 1.38710 * 119.94637 * 0.57112 * 6 5 4 8 8 O 1.35903 * 120.06033 * 179.72093 * 7 6 5 9 9 C 1.42905 * 116.99451 * 359.72709 * 8 7 6 10 10 C 1.53005 * 109.46902 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.46887 * 64.99770 * 10 9 8 12 12 C 1.36937 * 120.00493 * 269.99691 * 11 10 9 13 13 H 1.07997 * 119.99928 * 141.51328 * 12 11 10 14 14 C 1.38810 * 119.99970 * 321.51699 * 12 11 10 15 15 N 1.31621 * 120.00021 * 339.39626 * 14 12 11 16 16 Si 1.86804 * 120.00065 * 159.39870 * 14 12 11 17 17 H 1.48499 * 109.46920 * 59.99818 * 16 14 12 18 18 H 1.48500 * 109.46968 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46900 * 300.00104 * 16 14 12 20 20 C 1.46500 * 119.99512 * 90.00486 * 11 10 9 21 21 C 1.54266 * 110.02976 * 242.53604 * 20 11 10 22 22 C 1.54972 * 104.16112 * 217.13619 * 21 20 11 23 23 C 1.54889 * 102.77464 * 37.89131 * 22 21 20 24 24 C 1.53878 * 110.03397 * 125.32087 * 20 11 10 25 25 C 1.38122 * 119.96964 * 89.99845 * 3 2 1 26 26 H 1.09001 * 109.47190 * 59.99856 * 1 2 3 27 27 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46984 * 299.99689 * 1 2 3 29 29 H 1.09008 * 109.47214 * 240.00332 * 2 1 3 30 30 H 1.09001 * 109.47190 * 120.00144 * 2 1 3 31 31 H 1.08009 * 119.94007 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97073 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.03037 * 180.29304 * 6 5 4 34 34 H 1.08989 * 109.47312 * 299.99845 * 9 8 7 35 35 H 1.09001 * 109.47038 * 59.99999 * 9 8 7 36 36 H 1.08997 * 109.47044 * 185.00276 * 10 9 8 37 37 H 1.09004 * 109.46867 * 305.00121 * 10 9 8 38 38 H 0.97001 * 120.00271 * 175.02519 * 15 14 12 39 39 H 1.09002 * 110.02131 * 3.92840 * 20 11 10 40 40 H 1.08997 * 110.48760 * 335.78324 * 21 20 11 41 41 H 1.09005 * 110.48813 * 98.43002 * 21 20 11 42 42 H 1.08994 * 110.72129 * 279.57656 * 22 21 20 43 43 H 1.09004 * 110.92176 * 156.29422 * 22 21 20 44 44 H 1.09002 * 110.48798 * 203.40717 * 23 22 21 45 45 H 1.08997 * 110.59957 * 80.81336 * 23 22 21 46 46 H 1.08992 * 110.03620 * 238.56940 * 24 20 11 47 47 H 1.08997 * 110.02995 * 0.02562 * 24 20 11 48 48 H 1.08005 * 120.02802 * 0.02731 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0724 -1.1978 5 6 2.7236 3.3755 -1.2012 6 6 2.9500 4.0324 -0.0070 7 6 2.7252 3.3794 1.1959 8 8 2.9525 4.0215 2.3719 9 6 3.4284 5.3668 2.2951 10 6 3.6237 5.9202 3.7081 11 7 4.6862 5.1711 4.3833 12 6 4.3794 4.0524 5.1110 13 1 5.0367 3.1959 5.0876 14 6 3.2233 4.0194 5.8787 15 7 2.6417 5.1431 6.2412 16 14 2.4930 2.3801 6.3973 17 1 3.4850 1.6313 7.2100 18 1 1.2695 2.6166 7.2048 19 1 2.1446 1.5893 5.1897 20 6 6.0773 5.6190 4.2801 21 6 6.9282 4.5422 3.5756 22 6 8.2894 4.5911 4.3148 23 6 7.8714 4.8339 5.7863 24 6 6.6769 5.8049 5.6850 25 6 2.2624 2.0713 1.1965 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 2.0817 1.5619 -2.1324 32 1 2.9027 3.8821 -2.1380 33 1 3.3059 5.0521 -0.0100 34 1 4.3790 5.3860 1.7624 35 1 2.7010 5.9795 1.7626 36 1 3.9009 6.9727 3.6510 37 1 2.6948 5.8190 4.2695 38 1 1.7958 5.1204 6.7154 39 1 6.1274 6.5562 3.7258 40 1 6.4689 3.5600 3.6867 41 1 7.0568 4.7872 2.5212 42 1 8.8994 5.4153 3.9454 43 1 8.8205 3.6444 4.2153 44 1 8.6884 5.2913 6.3444 45 1 7.5650 3.8999 6.2571 46 1 7.0187 6.8319 5.8123 47 1 5.9330 5.5614 6.4436 48 1 2.0828 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610003295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:30 Heat of formation + Delta-G solvation = -12.978943 kcal Electronic energy + Delta-G solvation = -25669.553405 eV Core-core repulsion = 22303.441589 eV Total energy + Delta-G solvation = -3366.111816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.65854 -37.85675 -37.12714 -34.30838 -33.56750 -31.24311 -30.17930 -28.94079 -28.35107 -27.79758 -26.34317 -24.27180 -23.40422 -22.11711 -21.38603 -20.06868 -19.85757 -18.97954 -17.29677 -16.40933 -15.69977 -15.56159 -15.26933 -14.95579 -14.62853 -14.42561 -14.14754 -13.82335 -13.34180 -13.19788 -13.03242 -12.74769 -12.56372 -12.47262 -12.11908 -11.83954 -11.64870 -11.21539 -11.10038 -11.01692 -10.89842 -10.72670 -10.61619 -10.50586 -10.37737 -10.34084 -10.19146 -10.16879 -10.03881 -9.72809 -9.59943 -9.44247 -8.51940 -8.34338 -7.66854 -6.51450 -5.67112 -3.28661 1.61666 1.83691 3.45074 3.50326 3.55206 3.96995 4.08342 4.58559 4.89027 5.03523 5.20316 5.27801 5.38276 5.39630 5.39747 5.45264 5.51625 5.54222 5.63507 5.70166 5.78497 5.80825 5.90220 5.95561 6.06356 6.11548 6.17033 6.21890 6.25735 6.28804 6.31589 6.38553 6.48301 6.56496 6.59235 6.66348 6.67736 6.70395 6.80659 6.87842 6.88943 7.06375 7.16513 7.20680 7.41974 7.59852 7.93268 8.18244 8.62208 9.26779 9.90190 10.46316 11.30905 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.004905 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.520379 B = 5706.943345 C = 6695.828010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.175 4.175 5 C -0.080 4.080 6 C -0.224 4.224 7 C 0.150 3.850 8 O -0.271 6.271 9 C 0.044 3.956 10 C 0.143 3.857 11 N -0.571 5.571 12 C -0.230 4.230 13 H 0.057 0.943 14 C 0.018 3.982 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.284 1.284 18 H -0.293 1.293 19 H -0.281 1.281 20 C 0.169 3.831 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.157 4.157 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.252 0.748 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.087 0.913 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -2.813 -11.755 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.047 4.047 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.243 4.243 7 C 0.102 3.898 8 O -0.182 6.182 9 C -0.034 4.034 10 C 0.015 3.985 11 N -0.290 5.290 12 C -0.359 4.359 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.211 1.211 18 H -0.219 1.219 19 H -0.207 1.207 20 C 0.062 3.938 21 C -0.174 4.174 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 C -0.176 4.176 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.249 -2.817 -11.350 11.761 hybrid contribution -0.349 -0.591 -0.052 0.688 sum 0.900 -3.409 -11.403 11.935 Atomic orbital electron populations 1.21739 0.94822 1.01421 1.02336 1.20531 0.96133 0.92778 1.02684 1.19593 0.97076 0.95596 0.92417 1.20727 1.05973 0.95587 0.97030 1.20811 0.97432 0.94499 0.97070 1.21247 1.09390 1.01235 0.92413 1.19327 0.92250 0.92170 0.86041 1.86473 1.78627 1.27915 1.25223 1.23923 0.96044 0.80282 1.03106 1.21060 0.97392 0.91776 0.88235 1.43844 0.99804 1.29714 1.55662 1.18689 1.07396 0.91085 1.18752 0.92561 1.25016 1.00995 0.95964 0.96188 1.70020 1.18112 1.25158 1.40206 0.86602 0.78533 0.84953 0.78097 1.21070 1.21948 1.20749 1.21074 0.85847 0.93614 0.93255 1.22856 0.94895 1.02223 0.97442 1.22437 0.97366 0.99781 0.96470 1.22250 0.97451 1.00024 0.95781 1.22533 0.97201 0.96514 1.00706 1.20338 1.05652 0.93255 0.98371 0.92671 0.92608 0.92333 0.91187 0.90945 0.86793 0.86595 0.85941 0.93902 0.94332 0.93462 0.87859 0.93830 0.93679 0.90764 0.93819 0.92788 0.93000 0.93491 0.91986 0.94175 0.89481 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.90 37.16 0.37 -1.21 16 2 C -0.08 -1.00 6.06 -27.88 -0.17 -1.17 16 3 C -0.05 -0.69 5.13 -104.65 -0.54 -1.23 16 4 C -0.17 -2.40 9.70 -39.56 -0.38 -2.78 16 5 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 6 C -0.22 -3.65 9.04 -39.44 -0.36 -4.01 16 7 C 0.15 2.86 6.69 -39.22 -0.26 2.59 16 8 O -0.27 -5.93 9.61 -19.44 -0.19 -6.12 16 9 C 0.04 0.87 5.08 37.16 0.19 1.05 16 10 C 0.14 3.17 5.71 -4.04 -0.02 3.14 16 11 N -0.57 -13.38 2.36 -164.39 -0.39 -13.76 16 12 C -0.23 -5.99 7.26 -15.06 -0.11 -6.10 16 13 H 0.06 1.52 6.94 -52.49 -0.36 1.16 16 14 C 0.02 0.48 4.97 -17.43 -0.09 0.39 16 15 N -0.89 -25.04 11.48 55.49 0.64 -24.40 16 16 Si 0.89 21.90 29.61 -169.99 -5.03 16.87 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 C 0.17 3.45 3.42 -66.81 -0.23 3.22 16 21 C -0.13 -2.51 6.43 -25.03 -0.16 -2.68 16 22 C -0.12 -1.98 6.91 -24.69 -0.17 -2.15 16 23 C -0.12 -2.04 6.83 -25.07 -0.17 -2.21 16 24 C -0.13 -2.59 6.25 -25.61 -0.16 -2.75 16 25 C -0.16 -2.82 9.64 -39.43 -0.38 -3.20 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.85 6.30 -52.49 -0.33 1.52 16 34 H 0.04 0.80 7.67 -51.94 -0.40 0.40 16 35 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 36 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.10 2.65 5.55 -51.93 -0.29 2.36 16 38 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.04 0.87 7.81 -51.93 -0.41 0.46 16 40 H 0.07 1.57 6.64 -51.93 -0.34 1.23 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 2.06 7.16 -51.93 -0.37 1.69 16 48 H 0.13 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -28.09 378.99 -10.66 -38.75 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.36 Total: 3.57 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.04 Total: -20.61 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.25 Total: -38.17 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.19 Total: -6.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.09 -10.66 -38.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610003295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.766 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds