Wall clock time and date at job start Tue Mar 31 2020 08:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47373 * 2 1 4 4 C 1.38283 * 119.97663 * 270.02653 * 3 2 1 5 5 C 1.38246 * 120.11387 * 180.02562 * 4 3 2 6 6 C 1.38157 * 120.05349 * 359.67969 * 5 4 3 7 7 C 1.38710 * 119.94637 * 0.57112 * 6 5 4 8 8 O 1.35903 * 120.06033 * 179.72093 * 7 6 5 9 9 C 1.42905 * 116.99451 * 359.72709 * 8 7 6 10 10 C 1.53005 * 109.46902 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.46887 * 64.99770 * 10 9 8 12 12 C 1.36937 * 120.00493 * 269.99691 * 11 10 9 13 13 H 1.07997 * 119.99928 * 141.51328 * 12 11 10 14 14 C 1.38810 * 119.99970 * 321.51699 * 12 11 10 15 15 N 1.31621 * 120.00021 * 339.39626 * 14 12 11 16 16 Si 1.86804 * 120.00065 * 159.39870 * 14 12 11 17 17 H 1.48499 * 109.46920 * 59.99818 * 16 14 12 18 18 H 1.48500 * 109.46968 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46900 * 300.00104 * 16 14 12 20 20 C 1.46500 * 119.99512 * 90.00486 * 11 10 9 21 21 C 1.54266 * 110.02976 * 242.53604 * 20 11 10 22 22 C 1.54972 * 104.16112 * 217.13619 * 21 20 11 23 23 C 1.54889 * 102.77464 * 37.89131 * 22 21 20 24 24 C 1.53878 * 110.03397 * 125.32087 * 20 11 10 25 25 C 1.38122 * 119.96964 * 89.99845 * 3 2 1 26 26 H 1.09001 * 109.47190 * 59.99856 * 1 2 3 27 27 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46984 * 299.99689 * 1 2 3 29 29 H 1.09008 * 109.47214 * 240.00332 * 2 1 3 30 30 H 1.09001 * 109.47190 * 120.00144 * 2 1 3 31 31 H 1.08009 * 119.94007 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97073 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.03037 * 180.29304 * 6 5 4 34 34 H 1.08989 * 109.47312 * 299.99845 * 9 8 7 35 35 H 1.09001 * 109.47038 * 59.99999 * 9 8 7 36 36 H 1.08997 * 109.47044 * 185.00276 * 10 9 8 37 37 H 1.09004 * 109.46867 * 305.00121 * 10 9 8 38 38 H 0.97001 * 120.00271 * 175.02519 * 15 14 12 39 39 H 1.09002 * 110.02131 * 3.92840 * 20 11 10 40 40 H 1.08997 * 110.48760 * 335.78324 * 21 20 11 41 41 H 1.09005 * 110.48813 * 98.43002 * 21 20 11 42 42 H 1.08994 * 110.72129 * 279.57656 * 22 21 20 43 43 H 1.09004 * 110.92176 * 156.29422 * 22 21 20 44 44 H 1.09002 * 110.48798 * 203.40717 * 23 22 21 45 45 H 1.08997 * 110.59957 * 80.81336 * 23 22 21 46 46 H 1.08992 * 110.03620 * 238.56940 * 24 20 11 47 47 H 1.08997 * 110.02995 * 0.02562 * 24 20 11 48 48 H 1.08005 * 120.02802 * 0.02731 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0724 -1.1978 5 6 2.7236 3.3755 -1.2012 6 6 2.9500 4.0324 -0.0070 7 6 2.7252 3.3794 1.1959 8 8 2.9525 4.0215 2.3719 9 6 3.4284 5.3668 2.2951 10 6 3.6237 5.9202 3.7081 11 7 4.6862 5.1711 4.3833 12 6 4.3794 4.0524 5.1110 13 1 5.0367 3.1959 5.0876 14 6 3.2233 4.0194 5.8787 15 7 2.6417 5.1431 6.2412 16 14 2.4930 2.3801 6.3973 17 1 3.4850 1.6313 7.2100 18 1 1.2695 2.6166 7.2048 19 1 2.1446 1.5893 5.1897 20 6 6.0773 5.6190 4.2801 21 6 6.9282 4.5422 3.5756 22 6 8.2894 4.5911 4.3148 23 6 7.8714 4.8339 5.7863 24 6 6.6769 5.8049 5.6850 25 6 2.2624 2.0713 1.1965 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 2.0817 1.5619 -2.1324 32 1 2.9027 3.8821 -2.1380 33 1 3.3059 5.0521 -0.0100 34 1 4.3790 5.3860 1.7624 35 1 2.7010 5.9795 1.7626 36 1 3.9009 6.9727 3.6510 37 1 2.6948 5.8190 4.2695 38 1 1.7958 5.1204 6.7154 39 1 6.1274 6.5562 3.7258 40 1 6.4689 3.5600 3.6867 41 1 7.0568 4.7872 2.5212 42 1 8.8994 5.4153 3.9454 43 1 8.8205 3.6444 4.2153 44 1 8.6884 5.2913 6.3444 45 1 7.5650 3.8999 6.2571 46 1 7.0187 6.8319 5.8123 47 1 5.9330 5.5614 6.4436 48 1 2.0828 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610003295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:30 Heat of formation + Delta-G solvation = -25.034653 kcal Electronic energy + Delta-G solvation = -25670.076180 eV Core-core repulsion = 22303.441589 eV Total energy + Delta-G solvation = -3366.634591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98966 -39.42367 -38.51944 -36.01509 -34.66347 -33.16021 -31.56622 -30.17918 -29.76996 -29.31251 -28.10118 -25.82997 -24.72011 -23.34212 -22.95733 -21.43927 -21.24541 -20.69522 -18.63964 -18.25269 -17.14848 -16.86845 -16.80590 -16.60937 -16.20844 -15.96262 -15.49722 -14.98219 -14.84908 -14.62104 -14.40638 -14.07371 -14.02602 -13.87239 -13.54899 -13.33247 -12.92831 -12.82891 -12.71640 -12.62631 -12.39935 -12.19569 -12.01455 -11.94579 -11.85946 -11.81231 -11.76099 -11.72063 -11.51204 -11.35571 -11.22287 -11.12185 -10.39380 -9.72382 -8.99197 -8.48128 -7.70846 -5.34937 0.40948 0.59491 1.40450 1.44298 1.50622 2.52999 2.57929 2.86315 3.34179 3.61323 3.84280 3.94041 3.99059 4.04411 4.14562 4.25102 4.25685 4.31973 4.44049 4.50257 4.53330 4.61214 4.66276 4.67388 4.68691 4.75366 4.77314 4.92002 4.94545 4.97205 5.00682 5.05218 5.10154 5.17713 5.23184 5.23956 5.34238 5.35003 5.48575 5.55446 5.59259 5.63398 5.67473 5.70188 5.72382 5.86199 6.00532 6.55119 6.78578 7.27304 7.96881 8.46383 9.21211 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.004905 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.520379 B = 5706.943345 C = 6695.828010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.045 4.045 4 C -0.167 4.167 5 C -0.074 4.074 6 C -0.229 4.229 7 C 0.116 3.884 8 O -0.312 6.312 9 C 0.056 3.944 10 C 0.140 3.860 11 N -0.583 5.583 12 C -0.211 4.211 13 H 0.040 0.960 14 C -0.027 4.027 15 N -0.916 5.916 16 Si 0.929 3.071 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.289 1.289 20 C 0.161 3.839 21 C -0.129 4.129 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.186 4.186 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.245 0.755 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.058 0.942 47 H 0.040 0.960 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -3.007 -15.037 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.045 4.045 4 C -0.185 4.185 5 C -0.092 4.092 6 C -0.248 4.248 7 C 0.069 3.931 8 O -0.225 6.225 9 C -0.021 4.021 10 C 0.014 3.986 11 N -0.303 5.303 12 C -0.342 4.342 13 H 0.058 0.942 14 C -0.223 4.223 15 N -0.562 5.562 16 Si 0.759 3.241 17 H -0.206 1.206 18 H -0.222 1.222 19 H -0.216 1.216 20 C 0.054 3.946 21 C -0.168 4.168 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.167 4.167 25 C -0.205 4.205 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.705 -3.020 -14.647 15.198 hybrid contribution -0.778 -0.555 0.847 1.277 sum 1.928 -3.575 -13.800 14.386 Atomic orbital electron populations 1.21722 0.93942 1.02619 1.01750 1.20622 0.96819 0.91094 1.03628 1.19942 0.96004 0.96857 0.91737 1.21188 1.03984 0.95520 0.97770 1.21268 0.95668 0.94653 0.97562 1.21418 1.09411 1.01775 0.92167 1.19609 0.94455 0.92787 0.86199 1.86384 1.79761 1.28826 1.27537 1.23659 0.97099 0.80108 1.01223 1.20988 0.95565 0.92791 0.89286 1.43986 1.01403 1.29242 1.55653 1.18615 1.06589 0.91514 1.17496 0.94199 1.25435 1.01940 0.97617 0.97287 1.70117 1.18183 1.26104 1.41802 0.85947 0.77938 0.82877 0.77371 1.20561 1.22190 1.21558 1.21317 0.84302 0.94903 0.94028 1.22730 0.95929 0.99587 0.98570 1.22399 0.96096 1.01687 0.94638 1.22215 0.97143 0.98547 0.97245 1.22449 0.97103 0.98293 0.98868 1.20399 1.07776 0.93555 0.98796 0.91703 0.90560 0.94452 0.88429 0.91807 0.83101 0.82864 0.84949 0.92901 0.92267 0.91848 0.91509 0.94583 0.91979 0.94129 0.92263 0.90025 0.91577 0.90726 0.94028 0.92312 0.94134 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.90 71.98 0.71 -2.15 16 2 C -0.08 -1.87 6.06 29.85 0.18 -1.69 16 3 C -0.05 -1.29 5.13 -19.88 -0.10 -1.39 16 4 C -0.17 -3.99 9.70 22.28 0.22 -3.77 16 5 C -0.07 -1.82 10.04 22.25 0.22 -1.60 16 6 C -0.23 -7.15 9.04 22.36 0.20 -6.95 16 7 C 0.12 4.52 6.69 22.51 0.15 4.67 16 8 O -0.31 -14.27 9.61 -92.46 -0.89 -15.16 16 9 C 0.06 2.23 5.08 71.98 0.37 2.59 16 10 C 0.14 6.41 5.71 86.38 0.49 6.90 16 11 N -0.58 -28.10 2.36 -674.02 -1.59 -29.69 16 12 C -0.21 -11.54 7.26 84.03 0.61 -10.93 16 13 H 0.04 2.29 6.94 -2.91 -0.02 2.27 16 14 C -0.03 -1.51 4.97 84.86 0.42 -1.09 16 15 N -0.92 -54.11 11.48 21.65 0.25 -53.86 16 16 Si 0.93 47.29 29.61 68.60 2.03 49.32 16 17 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 18 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 19 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 20 C 0.16 6.48 3.42 45.72 0.16 6.63 16 21 C -0.13 -4.67 6.43 31.70 0.20 -4.47 16 22 C -0.11 -3.27 6.91 31.91 0.22 -3.05 16 23 C -0.11 -3.79 6.83 31.67 0.22 -3.57 16 24 C -0.13 -5.05 6.25 31.32 0.20 -4.86 16 25 C -0.19 -6.94 9.64 22.37 0.22 -6.72 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.64 8.09 -2.38 -0.02 1.62 16 30 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.13 3.76 6.30 -2.91 -0.02 3.74 16 34 H 0.05 1.94 7.67 -2.39 -0.02 1.92 16 35 H 0.06 2.05 7.65 -2.39 -0.02 2.03 16 36 H 0.06 2.61 7.90 -2.39 -0.02 2.59 16 37 H 0.07 3.61 5.55 -2.39 -0.01 3.60 16 38 H 0.24 14.27 8.32 -92.71 -0.77 13.50 16 39 H 0.06 2.28 7.81 -2.39 -0.02 2.26 16 40 H 0.04 1.74 6.64 -2.39 -0.02 1.72 16 41 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.04 1.98 7.16 -2.39 -0.02 1.96 16 48 H 0.10 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -65.41 378.99 5.39 -60.02 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.91 Total: 20.81 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.68 Total: -31.44 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.34 Total: -83.55 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.89 Total: -15.16 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -65.41 5.39 -60.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610003295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.988 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds