Wall clock time and date at job start Tue Mar 31 2020 08:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47025 * 2 1 4 4 C 1.52995 * 109.47420 * 59.99615 * 3 2 1 5 5 C 1.53006 * 109.46909 * 60.00215 * 4 3 2 6 6 C 1.53005 * 109.47239 * 299.99653 * 3 2 1 7 7 C 1.53002 * 109.47151 * 300.00252 * 6 3 2 8 8 C 1.53002 * 109.47025 * 180.02562 * 3 2 1 9 9 N 1.46499 * 109.47141 * 179.97438 * 8 3 2 10 10 C 1.34776 * 120.00191 * 179.97438 * 9 8 3 11 11 O 1.21582 * 120.00138 * 0.02562 * 10 9 8 12 12 C 1.47644 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.40010 * 119.89525 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10475 * 180.25163 * 13 12 10 15 15 C 1.40896 * 119.89127 * 359.52661 * 14 13 12 16 16 C 1.41105 * 120.10198 * 180.22988 * 15 14 13 17 17 H 1.08001 * 120.00056 * 204.79556 * 16 15 14 18 18 C 1.40223 * 120.00499 * 24.78776 * 16 15 14 19 19 N 1.30654 * 119.99604 * 17.72846 * 18 16 15 20 20 Si 1.86796 * 120.00554 * 197.72576 * 18 16 15 21 21 H 1.48504 * 109.47116 * 89.99790 * 20 18 16 22 22 H 1.48499 * 109.47678 * 210.00303 * 20 18 16 23 23 H 1.48502 * 109.47123 * 330.00406 * 20 18 16 24 24 C 1.40884 * 119.79293 * 0.49186 * 15 14 13 25 25 C 1.36316 * 119.88998 * 359.73808 * 24 15 14 26 26 H 1.08999 * 109.46929 * 60.00471 * 1 2 3 27 27 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47144 * 300.00538 * 1 2 3 29 29 H 1.09002 * 109.47144 * 239.99462 * 2 1 3 30 30 H 1.08999 * 109.46929 * 119.99529 * 2 1 3 31 31 H 1.09003 * 109.47458 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47260 * 300.00373 * 4 3 2 33 33 H 1.08997 * 109.47031 * 60.00018 * 5 4 3 34 34 H 1.09002 * 109.46922 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46665 * 299.99635 * 5 4 3 36 36 H 1.08997 * 109.46721 * 60.00068 * 6 3 2 37 37 H 1.08990 * 109.47196 * 180.02562 * 6 3 2 38 38 H 1.09005 * 109.46871 * 59.99547 * 7 6 3 39 39 H 1.08999 * 109.47407 * 179.97438 * 7 6 3 40 40 H 1.09004 * 109.47057 * 300.00250 * 7 6 3 41 41 H 1.08994 * 109.47413 * 60.00043 * 8 3 2 42 42 H 1.08999 * 109.46929 * 299.99529 * 8 3 2 43 43 H 0.97003 * 120.00227 * 0.02562 * 9 8 3 44 44 H 1.07997 * 119.94878 * 359.97438 * 13 12 10 45 45 H 1.08000 * 120.05610 * 179.71795 * 14 13 12 46 46 H 0.97000 * 119.99671 * 179.97438 * 19 18 16 47 47 H 1.07997 * 120.05779 * 179.70908 * 24 15 14 48 48 H 1.08006 * 119.94731 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 6 2.0400 1.4426 2.4985 6 6 1.5300 2.1637 -1.2493 7 6 2.0401 1.4425 -2.4985 8 6 3.5700 1.4425 -0.0006 9 7 4.0583 2.8237 -0.0013 10 6 5.3834 3.0700 -0.0014 11 8 6.1735 2.1459 -0.0014 12 6 5.8756 4.4620 -0.0014 13 6 7.2526 4.7153 -0.0021 14 6 7.7117 5.9988 0.0030 15 6 6.7981 7.0714 -0.0011 16 6 7.2684 8.4017 -0.0007 17 1 6.6466 9.1942 0.3887 18 6 8.5433 8.6949 -0.5057 19 7 9.1530 7.8360 -1.2788 20 14 9.3699 10.3132 -0.0733 21 1 10.1716 10.1442 1.1652 22 1 10.2607 10.7272 -1.1870 23 1 8.3345 11.3549 0.1457 24 6 5.4134 6.8114 0.0000 25 6 4.9638 5.5246 -0.0004 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8936 3.1914 1.2494 32 1 0.4400 2.1638 1.2491 33 1 3.1299 1.4426 2.4985 34 1 1.6770 1.9567 3.3884 35 1 1.6766 0.4150 2.4985 36 1 0.4401 2.1637 -1.2493 37 1 1.8937 3.1912 -1.2495 38 1 1.6767 0.4147 -2.4985 39 1 1.6765 1.9560 -3.3886 40 1 3.1301 1.4424 -2.4985 41 1 3.9330 0.9288 -0.8908 42 1 3.9337 0.9286 0.8891 43 1 3.4280 3.5610 -0.0008 44 1 7.9521 3.8925 -0.0021 45 1 8.7740 6.1933 0.0071 46 1 10.0347 8.0389 -1.6284 47 1 4.7093 7.6303 0.0016 48 1 3.9025 5.3242 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611154005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:15 Heat of formation + Delta-G solvation = -51.988734 kcal Electronic energy + Delta-G solvation = -25073.290608 eV Core-core repulsion = 21705.487200 eV Total energy + Delta-G solvation = -3367.803407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.93559 -38.40078 -36.94443 -33.87919 -33.56110 -32.33999 -30.88238 -30.12398 -29.53023 -27.76673 -25.96071 -25.22938 -23.37183 -22.02391 -21.75600 -20.76850 -19.57797 -18.18858 -17.50487 -16.94051 -15.97033 -15.47583 -15.29590 -15.26585 -14.97534 -14.01186 -13.82068 -13.76643 -13.20240 -13.19523 -13.03859 -12.87332 -12.74302 -12.63536 -12.20197 -12.09652 -11.98491 -11.80487 -11.59810 -11.56232 -11.41531 -11.34224 -11.23599 -10.94699 -10.69836 -10.60734 -10.41405 -10.30260 -10.19686 -10.02439 -9.51854 -9.32502 -8.92695 -8.48002 -7.67953 -7.54162 -7.00124 -4.58384 2.26948 2.92963 2.97065 2.99421 3.05100 3.75711 3.86885 3.92144 4.54230 4.59364 4.65577 4.66962 5.03742 5.06253 5.24492 5.29386 5.36973 5.42779 5.51951 5.57572 5.58910 5.64925 5.74055 5.75431 5.85151 5.90965 5.94972 5.99069 6.00366 6.03157 6.09270 6.19966 6.22201 6.27372 6.29254 6.31362 6.50553 6.82304 6.85919 7.03324 7.09013 7.13650 7.45752 7.63785 7.81603 7.90172 8.07448 8.30819 8.45317 8.65019 8.77654 9.14265 9.91889 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.002868 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.847384 B = 9760.043712 C = 9848.998793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.069 4.069 4 C -0.115 4.115 5 C -0.156 4.156 6 C -0.115 4.115 7 C -0.157 4.157 8 C 0.131 3.869 9 N -0.737 5.737 10 C 0.570 3.430 11 O -0.575 6.575 12 C -0.282 4.282 13 C -0.036 4.036 14 C -0.182 4.182 15 C 0.128 3.872 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.235 4.235 25 C -0.049 4.049 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.395 0.605 44 H 0.100 0.900 45 H 0.120 0.880 46 H 0.287 0.713 47 H 0.096 0.904 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -8.630 1.622 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.069 4.069 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.153 4.153 7 C -0.214 4.214 8 C 0.007 3.993 9 N -0.391 5.391 10 C 0.364 3.636 11 O -0.457 6.457 12 C -0.286 4.286 13 C -0.056 4.056 14 C -0.202 4.202 15 C 0.125 3.875 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.393 5.393 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.068 4.068 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.231 0.769 44 H 0.118 0.882 45 H 0.138 0.862 46 H 0.098 0.902 47 H 0.114 0.886 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.011 -9.330 1.463 16.077 hybrid contribution 0.095 1.094 0.031 1.098 sum -12.915 -8.236 1.493 15.391 Atomic orbital electron populations 1.21860 0.95813 1.01292 1.02099 1.21569 0.95973 0.95335 1.02341 1.20855 0.94526 0.96113 0.95408 1.21601 1.00448 0.99388 0.93816 1.21877 1.01977 1.00293 0.97203 1.21602 1.00439 0.99403 0.93818 1.21879 1.01997 1.00277 0.97214 1.21297 0.91916 0.84429 1.01697 1.45924 1.07548 1.07553 1.78104 1.18581 0.80991 0.89704 0.74310 1.90633 1.55578 1.46760 1.52748 1.18935 0.94363 0.90145 1.25170 1.20481 0.93336 0.96451 0.95308 1.21019 0.99994 0.91084 1.08082 1.17775 0.90906 0.93441 0.85368 1.19830 0.99359 0.94195 1.33831 0.89784 1.26104 0.96967 0.99217 0.92492 1.69755 1.13715 1.35573 1.20251 0.86212 0.79587 0.81180 0.79289 1.18928 1.20024 1.18334 1.20657 0.95459 0.94877 1.14473 1.20340 0.96003 0.93147 0.97352 0.92411 0.93103 0.92413 0.91542 0.91553 0.91892 0.91645 0.92094 0.93012 0.92591 0.91651 0.91883 0.92604 0.92992 0.92075 0.91974 0.91984 0.76933 0.88231 0.86198 0.90191 0.88565 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.21 37.16 0.34 -0.81 16 2 C -0.11 -1.01 4.28 -26.73 -0.11 -1.13 16 3 C -0.07 -0.70 0.11 -154.51 -0.02 -0.72 16 4 C -0.12 -1.14 4.46 -26.73 -0.12 -1.26 16 5 C -0.16 -1.58 9.21 37.16 0.34 -1.24 16 6 C -0.12 -1.15 4.46 -26.73 -0.12 -1.27 16 7 C -0.16 -1.62 9.21 37.16 0.34 -1.28 16 8 C 0.13 1.81 3.86 -4.04 -0.02 1.80 16 9 N -0.74 -12.05 4.91 -61.32 -0.30 -12.35 16 10 C 0.57 12.19 7.76 -12.42 -0.10 12.09 16 11 O -0.58 -14.01 16.32 5.29 0.09 -13.93 16 12 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 13 C -0.04 -0.90 9.52 -39.61 -0.38 -1.28 16 14 C -0.18 -4.71 8.63 -39.27 -0.34 -5.05 16 15 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 16 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.97 10.95 55.56 0.61 -18.36 16 20 Si 0.91 17.51 29.60 -169.99 -5.03 12.48 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 24 C -0.24 -5.45 9.73 -39.27 -0.38 -5.84 16 25 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 26 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 29 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 30 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.06 0.68 6.86 -51.93 -0.36 0.32 16 32 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.69 6.86 -51.93 -0.36 0.34 16 38 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 41 H 0.06 0.93 6.43 -51.93 -0.33 0.59 16 42 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 43 H 0.39 5.79 4.16 -40.82 -0.17 5.62 16 44 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 45 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 46 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 47 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 48 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -28.08 362.55 -8.93 -37.01 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.19 Total: 11.29 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.57 Total: -21.61 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.31 Total: -30.71 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.08 -8.93 -37.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611154005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.975 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds