Wall clock time and date at job start Tue Mar 31 2020 08:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47025 * 2 1 4 4 C 1.52995 * 109.47420 * 59.99615 * 3 2 1 5 5 C 1.53006 * 109.46909 * 60.00215 * 4 3 2 6 6 C 1.53005 * 109.47239 * 299.99653 * 3 2 1 7 7 C 1.53002 * 109.47151 * 300.00252 * 6 3 2 8 8 C 1.53002 * 109.47025 * 180.02562 * 3 2 1 9 9 N 1.46499 * 109.47141 * 179.97438 * 8 3 2 10 10 C 1.34776 * 120.00191 * 179.97438 * 9 8 3 11 11 O 1.21582 * 120.00138 * 0.02562 * 10 9 8 12 12 C 1.47644 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.40010 * 119.89525 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10475 * 180.25163 * 13 12 10 15 15 C 1.40896 * 119.89127 * 359.52661 * 14 13 12 16 16 C 1.41105 * 120.10198 * 180.22988 * 15 14 13 17 17 H 1.08001 * 120.00056 * 204.79556 * 16 15 14 18 18 C 1.40223 * 120.00499 * 24.78776 * 16 15 14 19 19 N 1.30654 * 119.99604 * 17.72846 * 18 16 15 20 20 Si 1.86796 * 120.00554 * 197.72576 * 18 16 15 21 21 H 1.48504 * 109.47116 * 89.99790 * 20 18 16 22 22 H 1.48499 * 109.47678 * 210.00303 * 20 18 16 23 23 H 1.48502 * 109.47123 * 330.00406 * 20 18 16 24 24 C 1.40884 * 119.79293 * 0.49186 * 15 14 13 25 25 C 1.36316 * 119.88998 * 359.73808 * 24 15 14 26 26 H 1.08999 * 109.46929 * 60.00471 * 1 2 3 27 27 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47144 * 300.00538 * 1 2 3 29 29 H 1.09002 * 109.47144 * 239.99462 * 2 1 3 30 30 H 1.08999 * 109.46929 * 119.99529 * 2 1 3 31 31 H 1.09003 * 109.47458 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47260 * 300.00373 * 4 3 2 33 33 H 1.08997 * 109.47031 * 60.00018 * 5 4 3 34 34 H 1.09002 * 109.46922 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46665 * 299.99635 * 5 4 3 36 36 H 1.08997 * 109.46721 * 60.00068 * 6 3 2 37 37 H 1.08990 * 109.47196 * 180.02562 * 6 3 2 38 38 H 1.09005 * 109.46871 * 59.99547 * 7 6 3 39 39 H 1.08999 * 109.47407 * 179.97438 * 7 6 3 40 40 H 1.09004 * 109.47057 * 300.00250 * 7 6 3 41 41 H 1.08994 * 109.47413 * 60.00043 * 8 3 2 42 42 H 1.08999 * 109.46929 * 299.99529 * 8 3 2 43 43 H 0.97003 * 120.00227 * 0.02562 * 9 8 3 44 44 H 1.07997 * 119.94878 * 359.97438 * 13 12 10 45 45 H 1.08000 * 120.05610 * 179.71795 * 14 13 12 46 46 H 0.97000 * 119.99671 * 179.97438 * 19 18 16 47 47 H 1.07997 * 120.05779 * 179.70908 * 24 15 14 48 48 H 1.08006 * 119.94731 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 6 2.0400 1.4426 2.4985 6 6 1.5300 2.1637 -1.2493 7 6 2.0401 1.4425 -2.4985 8 6 3.5700 1.4425 -0.0006 9 7 4.0583 2.8237 -0.0013 10 6 5.3834 3.0700 -0.0014 11 8 6.1735 2.1459 -0.0014 12 6 5.8756 4.4620 -0.0014 13 6 7.2526 4.7153 -0.0021 14 6 7.7117 5.9988 0.0030 15 6 6.7981 7.0714 -0.0011 16 6 7.2684 8.4017 -0.0007 17 1 6.6466 9.1942 0.3887 18 6 8.5433 8.6949 -0.5057 19 7 9.1530 7.8360 -1.2788 20 14 9.3699 10.3132 -0.0733 21 1 10.1716 10.1442 1.1652 22 1 10.2607 10.7272 -1.1870 23 1 8.3345 11.3549 0.1457 24 6 5.4134 6.8114 0.0000 25 6 4.9638 5.5246 -0.0004 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8936 3.1914 1.2494 32 1 0.4400 2.1638 1.2491 33 1 3.1299 1.4426 2.4985 34 1 1.6770 1.9567 3.3884 35 1 1.6766 0.4150 2.4985 36 1 0.4401 2.1637 -1.2493 37 1 1.8937 3.1912 -1.2495 38 1 1.6767 0.4147 -2.4985 39 1 1.6765 1.9560 -3.3886 40 1 3.1301 1.4424 -2.4985 41 1 3.9330 0.9288 -0.8908 42 1 3.9337 0.9286 0.8891 43 1 3.4280 3.5610 -0.0008 44 1 7.9521 3.8925 -0.0021 45 1 8.7740 6.1933 0.0071 46 1 10.0347 8.0389 -1.6284 47 1 4.7093 7.6303 0.0016 48 1 3.9025 5.3242 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611154005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:14 Heat of formation + Delta-G solvation = -65.600715 kcal Electronic energy + Delta-G solvation = -25073.880867 eV Core-core repulsion = 21705.487200 eV Total energy + Delta-G solvation = -3368.393667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19378 -39.84051 -38.70109 -35.69577 -34.99300 -33.14734 -32.07912 -31.62464 -31.26029 -28.98532 -27.48945 -26.27118 -24.45635 -23.38708 -22.82375 -22.57088 -21.23234 -19.39714 -19.20085 -18.34438 -17.13867 -16.90389 -16.83468 -16.19226 -16.07822 -15.73996 -15.33501 -15.20634 -14.99218 -14.42430 -14.07087 -13.94091 -13.83705 -13.64760 -13.59128 -13.54090 -13.27452 -13.04825 -12.85381 -12.75714 -12.61330 -12.40752 -12.37240 -12.31859 -12.15313 -11.76693 -11.49945 -11.37264 -11.26517 -11.13564 -11.06723 -11.01288 -10.68463 -9.97945 -9.57245 -9.40228 -8.79075 -6.48376 0.44923 1.14709 1.37702 1.43301 1.53092 2.12716 2.17942 2.45006 2.79943 3.65358 3.69513 3.82645 3.83049 4.23109 4.26503 4.28586 4.33117 4.40680 4.50757 4.56864 4.57845 4.63670 4.68717 4.75149 4.82119 4.90444 4.97043 5.01895 5.03338 5.03752 5.16007 5.16416 5.20778 5.22337 5.25806 5.33616 5.37554 5.43498 5.45875 5.47086 5.58158 5.63615 5.72536 5.78628 5.96588 6.01774 6.19965 6.55861 6.75450 6.76629 6.89634 7.48110 8.16108 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.002868 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.847384 B = 9760.043712 C = 9848.998793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.058 4.058 4 C -0.114 4.114 5 C -0.155 4.155 6 C -0.114 4.114 7 C -0.156 4.156 8 C 0.129 3.871 9 N -0.715 5.715 10 C 0.568 3.432 11 O -0.611 6.611 12 C -0.292 4.292 13 C -0.051 4.051 14 C -0.203 4.203 15 C 0.101 3.899 16 C -0.472 4.472 17 H 0.093 0.907 18 C 0.033 3.967 19 N -0.804 5.804 20 Si 0.990 3.010 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.250 1.250 24 C -0.245 4.245 25 C -0.037 4.037 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.405 0.595 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.295 0.705 47 H 0.117 0.883 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.549 -8.048 1.870 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.058 4.058 4 C -0.152 4.152 5 C -0.212 4.212 6 C -0.152 4.152 7 C -0.213 4.213 8 C 0.006 3.994 9 N -0.367 5.367 10 C 0.361 3.639 11 O -0.496 6.496 12 C -0.297 4.297 13 C -0.070 4.070 14 C -0.222 4.222 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.428 5.428 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.174 1.174 24 C -0.264 4.264 25 C -0.056 4.056 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.244 0.756 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.135 0.865 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.835 -8.757 1.708 18.176 hybrid contribution 0.909 0.800 -0.065 1.213 sum -14.926 -7.957 1.643 16.994 Atomic orbital electron populations 1.21835 0.94179 1.02088 1.02558 1.21564 0.97267 0.93963 1.02298 1.20800 0.91394 0.97551 0.96098 1.21624 1.01759 0.98636 0.93137 1.21862 1.00305 1.01322 0.97748 1.21625 1.01767 0.98619 0.93165 1.21865 1.00269 1.01347 0.97790 1.21477 0.94771 0.82454 1.00735 1.45724 1.05866 1.09283 1.75828 1.18432 0.82419 0.88626 0.74373 1.90611 1.56955 1.47456 1.54611 1.19201 0.93961 0.91795 1.24733 1.20542 0.94554 0.95870 0.96077 1.20942 0.99483 0.91818 1.09979 1.18137 0.92165 0.93797 0.86100 1.20152 1.00746 0.94255 1.34736 0.88944 1.27034 0.97016 1.02891 0.91633 1.69811 1.14382 1.37642 1.20941 0.85081 0.78503 0.76504 0.79002 1.18693 1.19173 1.17367 1.20933 0.94853 0.96300 1.14311 1.20652 0.97867 0.91885 0.95183 0.91944 0.92264 0.91875 0.91723 0.91642 0.92699 0.89422 0.94603 0.92360 0.91351 0.89402 0.92750 0.91315 0.92441 0.94668 0.93042 0.92893 0.75636 0.89276 0.87868 0.89399 0.86540 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.21 71.98 0.66 -1.06 16 2 C -0.11 -1.73 4.28 30.59 0.13 -1.60 16 3 C -0.06 -1.07 0.11 -52.18 -0.01 -1.07 16 4 C -0.11 -1.95 4.46 30.59 0.14 -1.81 16 5 C -0.16 -2.85 9.21 71.98 0.66 -2.19 16 6 C -0.11 -1.99 4.46 30.60 0.14 -1.85 16 7 C -0.16 -2.95 9.21 71.98 0.66 -2.29 16 8 C 0.13 3.51 3.86 86.38 0.33 3.84 16 9 N -0.71 -22.83 4.91 -466.17 -2.29 -25.12 16 10 C 0.57 24.57 7.76 86.73 0.67 25.25 16 11 O -0.61 -30.69 16.32 -3.97 -0.06 -30.76 16 12 C -0.29 -13.62 5.89 -19.93 -0.12 -13.74 16 13 C -0.05 -2.65 9.52 22.25 0.21 -2.43 16 14 C -0.20 -10.95 8.63 22.47 0.19 -10.75 16 15 C 0.10 5.28 5.57 -21.28 -0.12 5.17 16 16 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 17 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 18 C 0.03 1.56 5.14 85.35 0.44 2.00 16 19 N -0.80 -40.65 10.95 21.87 0.24 -40.41 16 20 Si 0.99 35.61 29.60 68.60 2.03 37.64 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 23 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 24 C -0.24 -11.20 9.73 22.47 0.22 -10.98 16 25 C -0.04 -1.54 9.47 22.25 0.21 -1.33 16 26 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 29 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 30 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 31 H 0.05 1.03 6.86 -2.39 -0.02 1.02 16 32 H 0.09 1.16 6.43 -2.39 -0.02 1.15 16 33 H 0.03 0.83 6.43 -2.39 -0.02 0.82 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 36 H 0.09 1.19 6.43 -2.39 -0.02 1.17 16 37 H 0.05 1.05 6.86 -2.39 -0.02 1.03 16 38 H 0.07 1.11 6.43 -2.38 -0.02 1.09 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.03 0.84 6.43 -2.39 -0.02 0.83 16 41 H 0.05 1.54 6.43 -2.39 -0.02 1.53 16 42 H 0.05 1.57 6.43 -2.39 -0.02 1.55 16 43 H 0.41 11.11 4.16 -92.71 -0.39 10.73 16 44 H 0.09 4.68 7.63 -2.91 -0.02 4.65 16 45 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 46 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 47 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 48 H 0.13 4.18 6.37 -2.91 -0.02 4.16 16 Total: -1.00 -63.05 362.55 5.15 -57.90 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.59 Total: 39.21 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.64 Total: -38.46 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -2.05 Total: -65.53 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.76 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -63.05 5.15 -57.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611154005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.698 kcal (2) G-P(sol) polarization free energy of solvation -63.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds