Wall clock time and date at job start Tue Mar 31 2020 09:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.53008 * 109.46944 * 119.99927 * 2 1 3 5 5 C 1.50701 * 109.46663 * 299.99832 * 4 2 1 6 6 H 1.08000 * 120.00383 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99363 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00340 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99528 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47263 * 59.99874 * 9 7 5 11 11 H 1.48500 * 109.46715 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47232 * 299.99656 * 9 7 5 13 13 C 1.52995 * 109.47437 * 239.99738 * 2 1 3 14 14 N 1.46899 * 109.47566 * 185.75554 * 13 2 1 15 15 C 1.48560 * 110.99901 * 276.02787 * 14 13 2 16 16 C 1.54376 * 104.59513 * 200.95991 * 15 14 13 17 17 C 1.54267 * 105.06048 * 23.85136 * 16 15 14 18 18 C 1.48558 * 111.00016 * 160.60650 * 14 13 2 19 19 H 1.09002 * 110.41565 * 40.26200 * 18 14 13 20 20 C 1.50695 * 110.41318 * 277.81753 * 18 14 13 21 21 C 1.38263 * 119.94495 * 319.72789 * 20 18 14 22 22 C 1.38151 * 120.05580 * 179.72196 * 21 20 18 23 23 C 1.38730 * 119.94144 * 0.52739 * 22 21 20 24 24 O 1.35901 * 120.05314 * 179.71958 * 23 22 21 25 25 C 1.38731 * 119.89369 * 359.75001 * 23 22 21 26 26 C 1.38151 * 119.94031 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47290 * 305.47643 * 1 2 3 28 28 H 1.09002 * 109.46984 * 65.47134 * 1 2 3 29 29 H 1.08997 * 109.47473 * 185.47135 * 1 2 3 30 30 H 1.09004 * 109.46669 * 164.74137 * 3 2 1 31 31 H 1.08997 * 109.47270 * 284.73735 * 3 2 1 32 32 H 1.08996 * 109.47448 * 44.74435 * 3 2 1 33 33 H 1.08998 * 109.47043 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46798 * 59.99635 * 4 2 1 35 35 H 0.97000 * 120.00610 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.47017 * 305.75796 * 13 2 1 37 37 H 1.09000 * 109.47261 * 65.74885 * 13 2 1 38 38 H 1.09003 * 110.40935 * 319.73646 * 15 14 13 39 39 H 1.08992 * 110.41114 * 82.17789 * 15 14 13 40 40 H 1.08999 * 110.32547 * 264.95994 * 16 15 14 41 41 H 1.08996 * 110.41489 * 142.78789 * 16 15 14 42 42 H 1.09007 * 110.32356 * 241.10699 * 17 16 15 43 43 H 1.08997 * 110.41129 * 118.94618 * 17 16 15 44 44 H 1.08000 * 119.97032 * 359.97438 * 21 20 18 45 45 H 1.08001 * 120.02458 * 180.29505 * 22 21 20 46 46 H 0.96696 * 114.00500 * 270.02425 * 24 23 22 47 47 H 1.07995 * 120.03604 * 180.02562 * 25 23 22 48 48 H 1.08002 * 119.97057 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9170 0.8676 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8528 9 14 1.2478 0.3988 5.2572 10 1 -0.2371 0.3977 5.2572 11 1 1.7429 -0.3012 6.4697 12 1 1.7418 1.7992 5.2571 13 6 2.0400 -0.7213 -1.2491 14 7 3.5024 -0.8427 -1.1817 15 6 4.1626 0.3933 -1.6751 16 6 5.5913 -0.0530 -2.0530 17 6 5.4784 -1.5665 -2.3297 18 6 3.9910 -1.9072 -2.0957 19 1 3.4423 -1.8812 -3.0372 20 6 3.8577 -3.2601 -1.4455 21 6 4.1577 -3.4140 -0.1047 22 6 4.0308 -4.6521 0.4951 23 6 3.6125 -5.7437 -0.2519 24 8 3.4924 -6.9639 0.3344 25 6 3.3176 -5.5879 -1.5985 26 6 3.4406 -4.3466 -2.1922 27 1 -0.3634 0.5964 0.8369 28 1 -0.3633 0.4266 -0.9349 29 1 -0.3634 -1.0229 0.0980 30 1 3.0959 1.4545 0.2705 31 1 1.9147 1.8722 -0.9938 32 1 1.4730 2.0284 0.7234 33 1 3.1299 -0.7217 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 2.8614 -1.8822 4.7337 36 1 1.5949 -1.7149 -1.3022 37 1 1.7632 -0.1515 -2.1362 38 1 3.6408 0.7794 -2.5508 39 1 4.1954 1.1468 -0.8882 40 1 6.2766 0.1304 -1.2255 41 1 5.9293 0.4710 -2.9470 42 1 6.1083 -2.1259 -1.6380 43 1 5.7598 -1.7867 -3.3595 44 1 4.4876 -2.5648 0.4753 45 1 4.2607 -4.7708 1.5436 46 1 4.2975 -7.4982 0.2991 47 1 2.9913 -6.4361 -2.1821 48 1 3.2107 -4.2247 -3.2404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611265416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:26 Heat of formation + Delta-G solvation = -41.885204 kcal Electronic energy + Delta-G solvation = -26252.720331 eV Core-core repulsion = 22885.355046 eV Total energy + Delta-G solvation = -3367.365285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10727 -39.92740 -37.99371 -37.08518 -34.46277 -32.17244 -31.96666 -31.80392 -29.01350 -28.51149 -27.53675 -26.45539 -24.68633 -23.83687 -23.27082 -21.67059 -21.01303 -19.50569 -19.29179 -18.25813 -17.41013 -16.97074 -16.55452 -16.25629 -16.10749 -15.54256 -15.38358 -14.95240 -14.69138 -14.39186 -14.19184 -14.08540 -13.99164 -13.80556 -13.67150 -13.18430 -13.09142 -12.80248 -12.73936 -12.65732 -12.56035 -12.29850 -12.20811 -12.09940 -11.96519 -11.82949 -11.64493 -11.36220 -11.27955 -11.15038 -10.68624 -10.66371 -10.39354 -9.82786 -9.31844 -9.12428 -8.04033 -6.10071 0.33779 0.51609 1.39384 1.41188 1.48082 2.47085 2.73965 3.17839 3.28487 3.35114 3.76142 3.88002 4.01783 4.15017 4.15199 4.17674 4.29508 4.35391 4.40930 4.48320 4.55429 4.68458 4.73408 4.75136 4.83596 4.89749 4.94207 4.99172 5.01478 5.03913 5.10330 5.18959 5.20802 5.25996 5.29958 5.38980 5.45308 5.52860 5.58292 5.61747 5.69474 5.73902 5.77957 6.01063 6.05406 6.16355 6.22128 6.36086 6.49186 6.89746 7.08376 7.55388 9.06199 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.005872 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.043587 B = 4767.557014 C = 6322.501757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.114 4.114 4 C 0.073 3.927 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.928 5.928 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.071 3.929 14 N -0.512 5.512 15 C 0.026 3.974 16 C -0.119 4.119 17 C -0.108 4.108 18 C 0.102 3.898 19 H 0.072 0.928 20 C -0.084 4.084 21 C -0.070 4.070 22 C -0.167 4.167 23 C 0.093 3.907 24 O -0.512 6.512 25 C -0.150 4.150 26 C -0.099 4.099 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.007 0.993 34 H -0.038 1.038 35 H 0.254 0.746 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.407 0.593 47 H 0.150 0.850 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -2.666 -17.650 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C -0.171 4.171 4 C 0.036 3.964 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.569 5.569 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.194 1.194 13 C -0.057 4.057 14 N -0.236 5.236 15 C -0.101 4.101 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.006 4.006 19 H 0.090 0.910 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.186 4.186 23 C 0.049 3.951 24 O -0.325 6.325 25 C -0.168 4.168 26 C -0.117 4.117 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.025 0.975 34 H -0.019 1.019 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.265 0.735 47 H 0.168 0.832 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.236 -2.691 -16.850 17.849 hybrid contribution -0.156 0.058 1.068 1.081 sum 5.081 -2.634 -15.783 16.788 Atomic orbital electron populations 1.21668 0.95348 1.00214 1.00684 1.20520 0.94499 0.95757 0.95078 1.21783 1.00418 0.95090 0.99784 1.18667 0.95193 0.91875 0.90694 1.21743 1.29955 1.11726 0.92256 0.92531 1.25803 0.95957 0.95922 1.02021 1.70121 1.38766 1.24664 1.23384 0.85811 0.78733 0.78958 0.79358 1.19834 1.21567 1.19415 1.22193 0.87950 0.99063 0.96489 1.65198 1.06102 1.04191 1.48086 1.23407 0.94838 0.92998 0.98848 1.22298 0.96000 0.95473 1.01918 1.22308 0.93600 0.96199 1.02458 1.21576 0.97009 0.88564 0.93480 0.90968 1.19848 0.99757 0.95426 0.93440 1.20817 0.97344 0.95622 0.95046 1.21516 1.02857 0.94131 1.00057 1.18571 0.99917 0.85203 0.91448 1.84776 1.41483 1.26223 1.80018 1.21516 1.02716 0.99259 0.93354 1.21163 0.98499 0.91264 1.00804 0.93634 0.91888 0.95041 0.93393 0.92395 0.94506 0.97512 1.01936 0.93676 0.93400 0.93234 0.92695 0.90540 0.92139 0.88997 0.92323 0.88795 0.87702 0.87547 0.73477 0.83206 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.09 71.98 0.58 -4.05 16 2 C -0.06 -2.34 0.61 -52.18 -0.03 -2.37 16 3 C -0.11 -4.16 6.67 71.98 0.48 -3.68 16 4 C 0.07 3.84 3.76 29.85 0.11 3.95 16 5 C -0.52 -29.53 7.85 25.60 0.20 -29.33 16 6 H 0.06 3.11 5.81 -2.91 -0.02 3.09 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 8 N -0.93 -58.22 13.28 21.45 0.28 -57.93 16 9 Si 0.95 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.07 2.42 3.98 86.30 0.34 2.76 16 14 N -0.51 -16.49 3.25 -861.05 -2.80 -19.28 16 15 C 0.03 0.70 5.33 86.45 0.46 1.16 16 16 C -0.12 -2.59 7.00 31.49 0.22 -2.37 16 17 C -0.11 -2.38 6.52 31.49 0.21 -2.17 16 18 C 0.10 2.70 2.40 44.32 0.11 2.81 16 19 H 0.07 1.64 7.88 -2.39 -0.02 1.62 16 20 C -0.08 -2.56 4.50 -19.85 -0.09 -2.65 16 21 C -0.07 -2.63 9.13 22.26 0.20 -2.43 16 22 C -0.17 -6.24 9.99 22.37 0.22 -6.02 16 23 C 0.09 2.92 6.70 22.51 0.15 3.07 16 24 O -0.51 -14.34 13.50 -92.44 -1.25 -15.59 16 25 C -0.15 -3.91 9.99 22.37 0.22 -3.69 16 26 C -0.10 -2.50 9.67 22.26 0.22 -2.28 16 27 H 0.04 1.85 6.72 -2.39 -0.02 1.84 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.85 5.76 -2.39 -0.01 1.84 16 31 H 0.06 1.71 7.88 -2.39 -0.02 1.69 16 32 H 0.04 1.42 7.04 -2.39 -0.02 1.40 16 33 H 0.01 0.38 7.45 -2.39 -0.02 0.36 16 34 H -0.04 -2.31 8.14 -2.39 -0.02 -2.33 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.05 1.75 7.64 -2.38 -0.02 1.74 16 37 H 0.05 1.41 7.47 -2.39 -0.02 1.40 16 38 H 0.05 1.25 7.64 -2.39 -0.02 1.23 16 39 H 0.08 2.28 5.40 -2.39 -0.01 2.27 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.47 7.70 -2.38 -0.02 1.45 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 4.67 7.76 -2.91 -0.02 4.64 16 45 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.41 6.69 9.06 -74.06 -0.67 6.02 16 47 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 48 H 0.15 2.76 8.04 -2.91 -0.02 2.74 16 Total: -1.00 -71.24 371.08 2.60 -68.64 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.26 Total: 22.94 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 4.07 Total: -46.83 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.51 Total: -77.21 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.25 Total: -15.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.24 2.60 -68.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.753 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds