Wall clock time and date at job start Tue Mar 31 2020 08:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99870 * 2 1 3 5 5 C 1.53513 * 114.17084 * 180.02562 * 4 2 1 6 6 N 1.47472 * 87.93351 * 220.32975 * 5 4 2 7 7 C 1.46896 * 111.00146 * 138.70259 * 6 5 4 8 8 C 1.50703 * 109.47122 * 170.00015 * 7 6 5 9 9 C 1.38290 * 119.97179 * 269.97607 * 8 7 6 10 10 C 1.38247 * 120.11177 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.05547 * 359.77590 * 10 9 8 12 12 C 1.38709 * 119.93966 * 0.52226 * 11 10 9 13 13 O 1.35905 * 120.05570 * 179.72312 * 12 11 10 14 14 C 1.42901 * 116.99604 * 359.72908 * 13 12 11 15 15 C 1.52998 * 109.47046 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47225 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99797 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47054 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47314 * 119.99807 * 20 18 16 23 23 H 1.48502 * 109.47280 * 239.99730 * 20 18 16 24 24 C 1.38119 * 119.97324 * 90.00132 * 8 7 6 25 25 C 1.47482 * 87.83757 * 27.00848 * 6 5 4 26 26 H 1.09007 * 109.46774 * 300.00116 * 1 2 3 27 27 H 1.09001 * 109.47048 * 60.00335 * 1 2 3 28 28 H 1.08995 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47180 * 240.00151 * 2 1 3 30 30 H 1.09001 * 109.46934 * 299.99734 * 3 2 1 31 31 H 1.09000 * 109.47305 * 59.99598 * 3 2 1 32 32 H 1.09000 * 109.47295 * 180.02562 * 3 2 1 33 33 H 1.09005 * 113.25660 * 312.94718 * 4 2 1 34 34 H 1.09005 * 113.47791 * 105.55683 * 5 4 2 35 35 H 1.09005 * 113.47434 * 335.09505 * 5 4 2 36 36 H 1.09001 * 109.46921 * 50.00520 * 7 6 5 37 37 H 1.08994 * 109.47356 * 289.99847 * 7 6 5 38 38 H 1.08001 * 119.94690 * 0.02562 * 9 8 7 39 39 H 1.07998 * 119.97087 * 180.02562 * 10 9 8 40 40 H 1.07997 * 120.02712 * 180.24939 * 11 10 9 41 41 H 1.08996 * 109.47352 * 299.99771 * 14 13 12 42 42 H 1.08999 * 109.47144 * 59.99795 * 14 13 12 43 43 H 1.08998 * 109.47592 * 300.00144 * 15 14 13 44 44 H 1.09007 * 109.46935 * 60.00317 * 15 14 13 45 45 H 0.97005 * 119.99444 * 180.02562 * 19 18 16 46 46 H 1.08005 * 120.02942 * 359.97438 * 24 8 7 47 47 H 1.08999 * 113.47547 * 87.75745 * 25 6 5 48 48 H 1.09002 * 113.48042 * 218.22647 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7835 1.3585 6 7 3.4254 -2.1674 1.8473 7 6 4.4459 -3.0436 1.2569 8 6 4.4266 -4.3788 1.9555 9 6 5.2219 -4.5884 3.0672 10 6 5.2061 -5.8120 3.7105 11 6 4.3917 -6.8272 3.2467 12 6 3.5977 -6.6215 2.1282 13 8 2.8000 -7.6203 1.6666 14 6 2.8334 -8.8587 2.3788 15 6 1.8774 -9.8534 1.7173 16 6 1.9130 -11.1596 2.4681 17 1 2.5531 -11.2692 3.3310 18 6 1.1285 -12.2148 2.0533 19 7 0.3493 -12.0814 1.0021 20 14 1.1721 -13.8336 2.9843 21 1 2.1220 -13.7257 4.1206 22 1 -0.1849 -14.1437 3.5019 23 1 1.6132 -14.9182 2.0709 24 6 3.6150 -5.3923 1.4845 25 6 2.1617 -2.2432 1.0907 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.5402 -0.4029 2.1642 34 1 3.9804 -0.1008 2.1025 35 1 4.0772 -0.7138 0.3961 36 1 5.4286 -2.5867 1.3736 37 1 4.2344 -3.1850 0.1971 38 1 5.8559 -3.7947 3.4340 39 1 5.8278 -5.9731 4.5788 40 1 4.3767 -7.7816 3.7521 41 1 3.8462 -9.2609 2.3611 42 1 2.5266 -8.6923 3.4115 43 1 0.8646 -9.4510 1.7354 44 1 2.1839 -10.0198 0.6845 45 1 -0.2029 -12.8237 0.7106 46 1 2.9940 -5.2282 0.6162 47 1 2.2931 -2.5630 0.0570 48 1 1.3785 -2.7976 1.6078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619431133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:42 Heat of formation + Delta-G solvation = -3.092821 kcal Electronic energy + Delta-G solvation = -23803.929604 eV Core-core repulsion = 20438.246483 eV Total energy + Delta-G solvation = -3365.683121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73855 -39.59016 -37.25350 -35.35678 -33.38304 -32.14607 -30.79618 -29.24820 -28.36949 -27.74608 -25.81665 -25.20520 -24.47342 -22.28527 -21.81124 -20.99890 -20.16127 -19.73561 -17.56755 -16.25885 -16.16904 -15.87466 -15.61677 -15.51880 -15.27149 -14.78947 -14.74750 -14.42235 -13.99477 -13.57357 -13.28953 -13.10336 -12.95115 -12.72175 -12.59404 -12.51199 -12.32827 -11.96789 -11.63456 -11.47383 -11.41569 -11.22644 -11.21439 -10.95144 -10.92211 -10.75561 -10.63872 -10.49953 -10.39842 -9.84098 -9.65180 -9.28328 -9.11169 -8.63669 -8.45126 -7.79488 -6.10521 -4.14959 1.49363 1.74186 3.26468 3.33499 3.37274 3.70029 3.87196 4.05944 4.14272 4.34025 4.41183 4.66109 4.68666 4.89660 4.97794 4.99762 5.04973 5.12696 5.17201 5.25973 5.31962 5.32955 5.37504 5.40020 5.44588 5.52448 5.54780 5.55865 5.64117 5.69984 5.78653 5.80298 5.84635 5.94361 6.05045 6.06541 6.11493 6.14125 6.22551 6.58858 6.60377 6.73319 6.76023 6.84921 7.03458 7.51564 7.64356 7.82282 8.08281 8.24253 8.90853 9.49352 11.01124 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002366 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.702507 B =11830.038020 C =13030.621730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.110 4.110 5 C 0.001 3.999 6 N -0.464 5.464 7 C 0.062 3.938 8 C -0.040 4.040 9 C -0.153 4.153 10 C -0.081 4.081 11 C -0.212 4.212 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.153 4.153 25 C 0.003 3.997 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.070 0.930 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 25.999 -0.572 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.128 4.128 6 N -0.186 5.186 7 C -0.066 4.066 8 C -0.041 4.041 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.231 4.231 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.173 4.173 25 C -0.126 4.126 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.140 0.860 47 H 0.089 0.911 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.553 25.706 -0.134 26.528 hybrid contribution 0.165 -1.079 -0.196 1.109 sum 6.718 24.626 -0.329 25.528 Atomic orbital electron populations 1.21813 0.94849 1.02080 1.01675 1.21104 0.96148 0.96218 0.97118 1.21806 1.00973 0.95787 1.01731 1.22820 0.95682 0.95281 0.99058 1.23865 0.96731 0.92460 0.99705 1.68958 1.02775 1.01995 1.44863 1.21602 0.97099 0.91639 0.96288 1.19263 0.95739 0.93473 0.95606 1.20729 1.02130 0.97305 0.97047 1.20873 0.97441 0.92772 0.98803 1.21374 1.01337 1.01273 0.99133 1.19140 0.89969 0.88966 0.92104 1.86165 1.59826 1.22101 1.54916 1.23317 1.01256 0.80668 0.95611 1.19129 0.94027 0.91243 0.96819 1.21014 1.25379 0.96436 1.13516 0.92306 1.25000 0.95118 0.99047 0.95111 1.69994 1.26196 1.32055 1.24532 0.86427 0.77950 0.83206 0.79781 1.19633 1.20829 1.20838 1.20221 1.03066 0.91355 1.02635 1.23998 0.94502 0.96408 0.97688 0.92611 0.92784 0.92391 0.91264 0.92794 0.92593 0.92678 0.88077 0.89870 0.91422 0.90071 0.92743 0.86584 0.86223 0.85314 0.93166 0.93157 0.95410 0.95424 0.92772 0.85982 0.91144 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.09 -0.57 2.73 -90.62 -0.25 -0.82 16 3 C -0.15 -0.83 9.00 37.16 0.33 -0.49 16 4 C -0.11 -0.85 3.45 -90.09 -0.31 -1.16 16 5 C 0.00 0.01 6.33 -7.55 -0.05 -0.04 16 6 N -0.46 -4.90 6.32 -246.10 -1.55 -6.45 16 7 C 0.06 0.66 4.94 -4.98 -0.02 0.63 16 8 C -0.04 -0.54 5.46 -104.64 -0.57 -1.12 16 9 C -0.15 -2.02 9.70 -39.56 -0.38 -2.40 16 10 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 11 C -0.21 -3.48 9.04 -39.43 -0.36 -3.83 16 12 C 0.15 2.63 6.69 -39.22 -0.26 2.37 16 13 O -0.32 -6.72 10.14 -19.44 -0.20 -6.92 16 14 C 0.07 1.44 4.68 37.16 0.17 1.61 16 15 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 16 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 20 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.15 -2.43 9.64 -39.43 -0.38 -2.81 16 25 C 0.00 0.03 7.28 -7.55 -0.05 -0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 7.48 -51.93 -0.39 -0.09 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 36 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.05 0.54 7.24 -51.93 -0.38 0.17 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.13 2.07 6.30 -52.49 -0.33 1.74 16 41 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 42 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.07 0.65 7.21 -51.93 -0.37 0.28 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -30.49 387.68 -11.48 -41.97 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.54 Total: -1.72 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.75 Total: -23.21 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: -0.82 Total: -32.35 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.20 Total: -6.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.49 -11.48 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619431133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.872 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds