Wall clock time and date at job start Tue Mar 31 2020 09:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46851 * 2 1 4 4 C 1.53007 * 109.46788 * 119.99657 * 2 1 3 5 5 C 1.53001 * 109.47197 * 65.67638 * 4 2 1 6 6 H 1.08998 * 109.90682 * 302.96508 * 5 4 2 7 7 C 1.53998 * 109.91260 * 64.06849 * 5 4 2 8 8 C 1.54593 * 105.13699 * 120.77737 * 7 5 4 9 9 C 1.54939 * 102.92389 * 21.95497 * 8 7 5 10 10 N 1.47903 * 110.07983 * 181.75498 * 5 4 2 11 11 C 1.46904 * 110.99788 * 94.71368 * 10 5 4 12 12 C 1.50694 * 109.47001 * 176.25611 * 11 10 5 13 13 C 1.38300 * 119.93130 * 269.72524 * 12 11 10 14 14 C 1.38097 * 120.06969 * 179.72788 * 13 12 11 15 15 C 1.38876 * 119.93032 * 0.54559 * 14 13 12 16 16 O 1.35751 * 120.07087 * 179.75023 * 15 14 13 17 17 C 1.34831 * 117.00062 * 185.93369 * 16 15 14 18 18 H 1.08002 * 120.00031 * 354.89811 * 17 16 15 19 19 C 1.38649 * 120.00359 * 174.89582 * 17 16 15 20 20 N 1.31560 * 119.99583 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00448 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47511 * 120.00199 * 21 19 17 24 24 H 1.48503 * 109.47282 * 240.00205 * 21 19 17 25 25 C 1.38880 * 119.86250 * 359.73084 * 15 14 13 26 26 C 1.38102 * 119.92669 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47064 * 304.55906 * 1 2 3 28 28 H 1.09000 * 109.47150 * 64.56423 * 1 2 3 29 29 H 1.08998 * 109.47013 * 184.56026 * 1 2 3 30 30 H 1.08997 * 109.46799 * 239.99517 * 2 1 3 31 31 H 1.08999 * 109.46672 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47130 * 299.99388 * 3 2 1 33 33 H 1.08999 * 109.47508 * 59.99702 * 3 2 1 34 34 H 1.08996 * 109.46967 * 305.67539 * 4 2 1 35 35 H 1.09002 * 109.46673 * 185.67878 * 4 2 1 36 36 H 1.09004 * 110.30620 * 239.68663 * 7 5 4 37 37 H 1.08993 * 110.31381 * 1.86083 * 7 5 4 38 38 H 1.09001 * 110.73073 * 140.31367 * 8 7 5 39 39 H 1.09004 * 110.72583 * 263.59506 * 8 7 5 40 40 H 1.08994 * 110.66927 * 81.01903 * 9 8 7 41 41 H 1.09004 * 110.66908 * 203.98953 * 9 8 7 42 42 H 1.08999 * 109.47179 * 296.26040 * 11 10 5 43 43 H 1.09005 * 109.46684 * 56.25793 * 11 10 5 44 44 H 1.08001 * 119.96599 * 0.02562 * 13 12 11 45 45 H 1.08004 * 120.03679 * 180.27420 * 14 13 12 46 46 H 0.97004 * 119.99907 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.03870 * 179.97438 * 25 15 14 48 48 H 1.08004 * 119.96093 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6498 -2.1990 1.1802 6 1 0.5690 -2.2929 1.0747 7 6 2.3538 -2.8721 -0.0127 8 6 3.1980 -4.0096 0.6063 9 6 2.4951 -4.2638 1.9635 10 7 2.0998 -2.9008 2.4019 11 6 1.0245 -2.9603 3.4010 12 6 1.4884 -3.7598 4.5911 13 6 1.2777 -5.1262 4.6292 14 6 1.7067 -5.8624 5.7159 15 6 2.3401 -5.2278 6.7764 16 8 2.7584 -5.9480 7.8484 17 6 3.2536 -5.2568 8.8948 18 1 3.3803 -4.1866 8.8237 19 6 3.6001 -5.9198 10.0621 20 7 3.4462 -7.2235 10.1485 21 14 4.2855 -4.9621 11.5120 22 1 4.3603 -3.5208 11.1624 23 1 3.3968 -5.1412 12.6882 24 1 5.6450 -5.4630 11.8380 25 6 2.5450 -3.8547 6.7379 26 6 2.1191 -3.1249 5.6455 27 1 -0.3633 0.5830 0.8464 28 1 -0.3633 0.4414 -0.9281 29 1 -0.3633 -1.0244 0.0817 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5960 -0.2694 2.1363 35 1 3.1253 -0.6340 1.3016 36 1 1.6177 -3.2809 -0.7048 37 1 2.9988 -2.1574 -0.5238 38 1 3.1620 -4.9013 -0.0196 39 1 4.2276 -3.6863 0.7597 40 1 1.6165 -4.8947 1.8295 41 1 3.1859 -4.7145 2.6761 42 1 0.7681 -1.9500 3.7195 43 1 0.1474 -3.4367 2.9628 44 1 0.7816 -5.6186 3.8059 45 1 1.5459 -6.9301 5.7430 46 1 3.6882 -7.6874 10.9654 47 1 3.0369 -3.3582 7.5612 48 1 2.2786 -2.0572 5.6147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731212885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:46 Heat of formation + Delta-G solvation = -19.090343 kcal Electronic energy + Delta-G solvation = -24642.733028 eV Core-core repulsion = 21276.356202 eV Total energy + Delta-G solvation = -3366.376826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.72434 -38.78938 -36.76652 -35.85052 -32.71977 -32.01658 -30.26355 -30.03108 -28.75448 -27.39288 -25.85259 -25.33774 -24.11935 -22.07472 -21.36020 -20.91386 -20.09149 -19.23560 -17.95751 -16.96004 -16.19874 -15.81974 -15.12429 -14.81015 -14.55277 -14.41473 -14.25069 -13.66244 -13.57950 -13.42973 -13.23089 -13.19080 -12.91980 -12.67461 -12.49200 -12.39891 -12.16866 -11.85442 -11.69922 -11.39340 -11.25183 -11.20237 -11.08586 -10.99557 -10.83032 -10.72060 -10.57152 -10.53017 -10.45937 -10.40198 -10.30466 -9.29944 -8.82048 -8.27001 -8.13385 -7.14255 -6.43566 -4.02124 2.24722 2.32240 3.13277 3.15027 3.20602 3.98054 4.02544 4.51342 4.62081 4.68919 4.79172 4.81805 4.84623 4.99944 5.11901 5.26464 5.27202 5.32005 5.40883 5.41448 5.43395 5.47051 5.53900 5.60922 5.68797 5.72971 5.74897 5.78112 5.81915 5.87000 5.92007 5.92908 5.95387 6.08222 6.10876 6.18574 6.23924 6.27599 6.29828 6.46087 6.72961 6.92370 7.03734 7.09227 7.22609 7.29597 7.44902 7.47793 7.85814 8.02022 9.02475 9.73067 10.74669 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002727 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.333785 B =10266.730918 C =10843.062169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.097 4.097 5 C 0.063 3.937 6 H 0.051 0.949 7 C -0.126 4.126 8 C -0.126 4.126 9 C 0.041 3.959 10 N -0.507 5.507 11 C 0.107 3.893 12 C -0.180 4.180 13 C -0.068 4.068 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.235 4.235 26 C -0.050 4.050 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 11.918 -19.685 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.045 4.045 6 H 0.069 0.931 7 C -0.164 4.164 8 C -0.164 4.164 9 C -0.086 4.086 10 N -0.231 5.231 11 C -0.020 4.020 12 C -0.181 4.181 13 C -0.087 4.087 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.254 4.254 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.422 11.769 -19.199 22.778 hybrid contribution -0.378 0.050 0.462 0.599 sum -3.799 11.820 -18.736 22.476 Atomic orbital electron populations 1.21899 0.95546 1.01772 1.01425 1.21169 0.95726 0.96105 0.98733 1.21828 1.00968 0.96043 1.01527 1.21558 1.01431 0.93415 0.97089 1.22451 0.97544 0.94660 0.89886 0.93128 1.22481 0.98957 0.97870 0.97089 1.22502 0.99807 0.97927 0.96144 1.23165 0.99017 0.90512 0.95918 1.64754 1.35950 1.13899 1.08537 1.20934 0.91025 0.99147 0.90901 1.19060 1.08663 0.93619 0.96781 1.20473 0.98624 0.93097 0.96465 1.20158 1.06598 0.99717 0.94815 1.19389 0.91351 0.90355 0.88727 1.83974 1.68451 1.34182 1.21663 1.21376 1.42020 0.92770 0.90474 0.89024 1.25288 0.97250 0.95995 0.98048 1.70053 1.44784 1.07298 1.27742 0.85649 0.78561 0.79187 0.80050 1.19081 1.20165 1.20164 1.21160 1.09119 0.94245 1.00887 1.20558 0.95469 0.98366 0.92458 0.92744 0.93093 0.92582 0.91197 0.92715 0.92993 0.92722 0.91953 0.91330 0.92009 0.91012 0.91466 0.90911 0.94101 0.89613 0.90959 0.95109 0.87657 0.86690 0.92113 0.85643 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.06 37.16 0.34 -0.80 16 2 C -0.10 -0.78 2.78 -90.61 -0.25 -1.03 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.73 16 4 C -0.10 -0.94 4.35 -26.73 -0.12 -1.06 16 5 C 0.06 0.67 2.37 -66.64 -0.16 0.51 16 6 H 0.05 0.54 5.93 -51.93 -0.31 0.23 16 7 C -0.13 -1.18 5.92 -25.37 -0.15 -1.33 16 8 C -0.13 -1.31 7.06 -24.87 -0.18 -1.49 16 9 C 0.04 0.53 5.08 -1.90 -0.01 0.52 16 10 N -0.51 -6.68 4.98 -224.00 -1.12 -7.80 16 11 C 0.11 1.50 4.98 -4.98 -0.02 1.48 16 12 C -0.18 -3.10 4.79 -104.58 -0.50 -3.60 16 13 C -0.07 -1.21 8.46 -39.61 -0.34 -1.55 16 14 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 15 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 16 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 17 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 18 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.07 0.54 6.65 -51.93 -0.35 0.19 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.62 6.74 -51.93 -0.35 0.27 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.51 7.51 -51.93 -0.39 0.12 16 41 H 0.09 1.28 7.72 -51.93 -0.40 0.88 16 42 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 43 H 0.03 0.41 7.92 -51.93 -0.41 0.00 16 44 H 0.11 1.61 7.59 -52.49 -0.40 1.21 16 45 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 48 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -29.83 374.99 -10.10 -39.94 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.13 Total: 3.12 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.25 Total: -26.67 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: -0.36 Total: -32.55 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.83 -10.10 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.845 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds