Wall clock time and date at job start Tue Mar 31 2020 09:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46851 * 2 1 4 4 C 1.53007 * 109.46788 * 119.99657 * 2 1 3 5 5 C 1.53001 * 109.47197 * 65.67638 * 4 2 1 6 6 H 1.08998 * 109.90682 * 302.96508 * 5 4 2 7 7 C 1.53998 * 109.91260 * 64.06849 * 5 4 2 8 8 C 1.54593 * 105.13699 * 120.77737 * 7 5 4 9 9 C 1.54939 * 102.92389 * 21.95497 * 8 7 5 10 10 N 1.47903 * 110.07983 * 181.75498 * 5 4 2 11 11 C 1.46904 * 110.99788 * 94.71368 * 10 5 4 12 12 C 1.50694 * 109.47001 * 176.25611 * 11 10 5 13 13 C 1.38300 * 119.93130 * 269.72524 * 12 11 10 14 14 C 1.38097 * 120.06969 * 179.72788 * 13 12 11 15 15 C 1.38876 * 119.93032 * 0.54559 * 14 13 12 16 16 O 1.35751 * 120.07087 * 179.75023 * 15 14 13 17 17 C 1.34831 * 117.00062 * 185.93369 * 16 15 14 18 18 H 1.08002 * 120.00031 * 354.89811 * 17 16 15 19 19 C 1.38649 * 120.00359 * 174.89582 * 17 16 15 20 20 N 1.31560 * 119.99583 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00448 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47511 * 120.00199 * 21 19 17 24 24 H 1.48503 * 109.47282 * 240.00205 * 21 19 17 25 25 C 1.38880 * 119.86250 * 359.73084 * 15 14 13 26 26 C 1.38102 * 119.92669 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47064 * 304.55906 * 1 2 3 28 28 H 1.09000 * 109.47150 * 64.56423 * 1 2 3 29 29 H 1.08998 * 109.47013 * 184.56026 * 1 2 3 30 30 H 1.08997 * 109.46799 * 239.99517 * 2 1 3 31 31 H 1.08999 * 109.46672 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47130 * 299.99388 * 3 2 1 33 33 H 1.08999 * 109.47508 * 59.99702 * 3 2 1 34 34 H 1.08996 * 109.46967 * 305.67539 * 4 2 1 35 35 H 1.09002 * 109.46673 * 185.67878 * 4 2 1 36 36 H 1.09004 * 110.30620 * 239.68663 * 7 5 4 37 37 H 1.08993 * 110.31381 * 1.86083 * 7 5 4 38 38 H 1.09001 * 110.73073 * 140.31367 * 8 7 5 39 39 H 1.09004 * 110.72583 * 263.59506 * 8 7 5 40 40 H 1.08994 * 110.66927 * 81.01903 * 9 8 7 41 41 H 1.09004 * 110.66908 * 203.98953 * 9 8 7 42 42 H 1.08999 * 109.47179 * 296.26040 * 11 10 5 43 43 H 1.09005 * 109.46684 * 56.25793 * 11 10 5 44 44 H 1.08001 * 119.96599 * 0.02562 * 13 12 11 45 45 H 1.08004 * 120.03679 * 180.27420 * 14 13 12 46 46 H 0.97004 * 119.99907 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.03870 * 179.97438 * 25 15 14 48 48 H 1.08004 * 119.96093 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6498 -2.1990 1.1802 6 1 0.5690 -2.2929 1.0747 7 6 2.3538 -2.8721 -0.0127 8 6 3.1980 -4.0096 0.6063 9 6 2.4951 -4.2638 1.9635 10 7 2.0998 -2.9008 2.4019 11 6 1.0245 -2.9603 3.4010 12 6 1.4884 -3.7598 4.5911 13 6 1.2777 -5.1262 4.6292 14 6 1.7067 -5.8624 5.7159 15 6 2.3401 -5.2278 6.7764 16 8 2.7584 -5.9480 7.8484 17 6 3.2536 -5.2568 8.8948 18 1 3.3803 -4.1866 8.8237 19 6 3.6001 -5.9198 10.0621 20 7 3.4462 -7.2235 10.1485 21 14 4.2855 -4.9621 11.5120 22 1 4.3603 -3.5208 11.1624 23 1 3.3968 -5.1412 12.6882 24 1 5.6450 -5.4630 11.8380 25 6 2.5450 -3.8547 6.7379 26 6 2.1191 -3.1249 5.6455 27 1 -0.3633 0.5830 0.8464 28 1 -0.3633 0.4414 -0.9281 29 1 -0.3633 -1.0244 0.0817 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5960 -0.2694 2.1363 35 1 3.1253 -0.6340 1.3016 36 1 1.6177 -3.2809 -0.7048 37 1 2.9988 -2.1574 -0.5238 38 1 3.1620 -4.9013 -0.0196 39 1 4.2276 -3.6863 0.7597 40 1 1.6165 -4.8947 1.8295 41 1 3.1859 -4.7145 2.6761 42 1 0.7681 -1.9500 3.7195 43 1 0.1474 -3.4367 2.9628 44 1 0.7816 -5.6186 3.8059 45 1 1.5459 -6.9301 5.7430 46 1 3.6882 -7.6874 10.9654 47 1 3.0369 -3.3582 7.5612 48 1 2.2786 -2.0572 5.6147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731212885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:45 Heat of formation + Delta-G solvation = -35.333409 kcal Electronic energy + Delta-G solvation = -24643.437380 eV Core-core repulsion = 21276.356202 eV Total energy + Delta-G solvation = -3367.081178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00055 -40.22857 -38.31831 -36.73201 -34.42234 -33.49362 -31.82220 -30.99192 -30.10731 -27.96445 -27.56212 -26.46354 -25.39683 -23.67878 -22.48003 -21.94628 -21.32176 -19.97788 -19.84126 -18.83071 -17.17107 -16.73360 -16.43779 -16.34898 -16.08447 -15.52358 -15.48030 -15.32031 -15.03911 -14.58440 -14.37295 -14.18292 -14.03442 -13.94619 -13.58743 -13.54737 -13.28784 -13.03595 -12.93172 -12.59905 -12.54857 -12.34249 -12.19011 -12.11084 -12.08176 -11.95464 -11.83173 -11.60206 -11.37609 -11.26598 -11.17660 -11.15116 -10.79861 -9.77280 -9.30194 -8.87766 -8.47638 -6.15584 0.59773 0.67662 1.34650 1.42772 1.53038 2.17420 2.75572 3.05292 3.30156 3.51181 3.74912 3.78709 4.00538 4.07568 4.09880 4.15709 4.16662 4.21710 4.26950 4.42913 4.49163 4.57756 4.58773 4.64761 4.71043 4.81547 4.85121 4.88325 4.91092 4.97443 5.03919 5.06252 5.08244 5.14048 5.15291 5.18790 5.24187 5.25126 5.30157 5.34783 5.43122 5.55099 5.57451 5.61259 5.71636 5.81271 6.02855 6.10397 6.17724 6.27142 6.97340 7.78287 8.75910 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002727 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.333785 B =10266.730918 C =10843.062169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.092 4.092 5 C 0.064 3.936 6 H 0.057 0.943 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.037 3.963 10 N -0.521 5.521 11 C 0.110 3.890 12 C -0.153 4.153 13 C -0.058 4.058 14 C -0.203 4.203 15 C 0.115 3.885 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.252 1.252 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.243 4.243 26 C -0.051 4.051 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.140 0.860 45 H 0.112 0.888 46 H 0.273 0.727 47 H 0.116 0.884 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 14.321 -22.303 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.130 4.130 5 C -0.044 4.044 6 H 0.075 0.925 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.091 4.091 10 N -0.246 5.246 11 C -0.017 4.017 12 C -0.154 4.154 13 C -0.076 4.076 14 C -0.222 4.222 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.262 4.262 26 C -0.070 4.070 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.158 0.842 45 H 0.130 0.870 46 H 0.082 0.918 47 H 0.134 0.866 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.261 14.207 -21.877 26.431 hybrid contribution -0.239 -0.586 0.931 1.126 sum -4.499 13.621 -20.946 25.388 Atomic orbital electron populations 1.21888 0.95147 1.01707 1.01786 1.21130 0.95970 0.96188 0.97950 1.21825 1.00927 0.95788 1.01817 1.21515 1.00718 0.93100 0.97704 1.22512 0.98031 0.94760 0.89057 0.92458 1.22477 0.99138 0.97483 0.96740 1.22479 0.99346 0.99098 0.95094 1.23155 0.98926 0.90396 0.96589 1.64704 1.35793 1.14295 1.09771 1.20933 0.91732 0.99247 0.89813 1.19546 1.05175 0.93624 0.97089 1.20819 0.97427 0.93404 0.95953 1.20407 1.06594 1.00094 0.95155 1.19917 0.93183 0.91648 0.88819 1.83938 1.71147 1.35743 1.23136 1.21845 1.42455 0.93393 0.91129 0.88249 1.26588 0.97410 0.97102 1.00984 1.70193 1.47388 1.09398 1.28979 0.84527 0.77896 0.78123 0.75646 1.17545 1.19255 1.19298 1.21235 1.09464 0.93593 1.01886 1.20868 0.94840 0.99616 0.91643 0.93136 0.92178 0.92692 0.90510 0.92822 0.92049 0.93123 0.92867 0.92363 0.90493 0.90097 0.89978 0.91620 0.93461 0.92359 0.89788 0.93466 0.84203 0.86969 0.91845 0.86578 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.06 71.98 0.65 -1.15 16 2 C -0.09 -1.20 2.78 -10.79 -0.03 -1.23 16 3 C -0.15 -1.79 9.19 71.98 0.66 -1.13 16 4 C -0.09 -1.54 4.35 30.60 0.13 -1.41 16 5 C 0.06 1.14 2.37 45.06 0.11 1.25 16 6 H 0.06 0.98 5.93 -2.39 -0.01 0.96 16 7 C -0.12 -1.82 5.92 31.47 0.19 -1.64 16 8 C -0.12 -2.22 7.06 31.80 0.22 -1.99 16 9 C 0.04 0.86 5.08 86.65 0.44 1.30 16 10 N -0.52 -12.19 4.98 -862.59 -4.30 -16.48 16 11 C 0.11 2.70 4.98 85.55 0.43 3.13 16 12 C -0.15 -4.93 4.79 -19.84 -0.09 -5.02 16 13 C -0.06 -1.97 8.46 22.25 0.19 -1.78 16 14 C -0.20 -8.83 9.99 22.39 0.22 -8.60 16 15 C 0.11 5.85 6.65 22.58 0.15 6.00 16 16 O -0.23 -14.32 9.76 -22.76 -0.22 -14.54 16 17 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 18 H 0.10 5.47 5.21 -2.91 -0.02 5.45 16 19 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 20 N -0.92 -57.30 13.67 21.61 0.30 -57.00 16 21 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 22 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 C -0.24 -10.93 9.17 22.39 0.21 -10.72 16 26 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.68 6.34 -2.39 -0.02 0.67 16 30 H 0.08 0.91 6.65 -2.39 -0.02 0.89 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 1.11 6.74 -2.39 -0.02 1.09 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.03 7.51 -2.39 -0.02 1.02 16 41 H 0.06 1.67 7.72 -2.38 -0.02 1.65 16 42 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 43 H 0.05 1.05 7.92 -2.38 -0.02 1.03 16 44 H 0.14 3.83 7.59 -2.91 -0.02 3.80 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 47 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 48 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -69.08 374.99 3.52 -65.56 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.92 Total: 26.21 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.80 Total: -49.37 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -4.00 Total: -73.48 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.22 Total: -14.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.08 3.52 -65.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.227 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds