Wall clock time and date at job start Tue Mar 31 2020 08:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21280 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47082 * 90.00423 * 11 10 8 13 13 H 1.07994 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99927 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99962 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00153 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47449 * 59.98833 * 16 14 12 18 18 H 1.48500 * 109.47549 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46857 * 299.99327 * 16 14 12 20 20 C 1.46504 * 119.99660 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.46721 * 89.99890 * 20 10 8 22 22 C 1.53001 * 109.47344 * 65.00198 * 21 20 10 23 23 C 1.53004 * 109.46753 * 184.99667 * 21 20 10 24 24 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 25 25 C 1.38230 * 119.99880 * 359.95582 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 33 33 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 34 34 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 35 35 H 1.09000 * 109.47082 * 209.99959 * 11 10 8 36 36 H 1.09002 * 109.47248 * 330.00068 * 11 10 8 37 37 H 0.96997 * 119.99897 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47153 * 209.99891 * 20 10 8 39 39 H 1.09000 * 109.47213 * 329.99905 * 20 10 8 40 40 H 1.08996 * 109.47569 * 304.99448 * 21 20 10 41 41 H 1.08996 * 109.46925 * 300.00025 * 22 21 20 42 42 H 1.09002 * 109.46978 * 59.99138 * 22 21 20 43 43 H 1.08991 * 109.47404 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47325 * 60.00119 * 23 21 20 45 45 H 1.09005 * 109.46962 * 180.02562 * 23 21 20 46 46 H 1.09002 * 109.47569 * 300.00311 * 23 21 20 47 47 H 1.08008 * 119.99983 * 179.97438 * 24 6 5 48 48 H 1.08007 * 119.99843 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1025 6.6152 -0.0009 12 6 7.6043 6.6150 -1.4219 13 1 6.9023 6.6145 -2.2425 14 6 8.9598 6.6145 -1.6743 15 7 9.8148 6.6146 -0.6750 16 14 9.5819 6.6150 -3.4357 17 1 9.0871 7.8279 -4.1351 18 1 11.0669 6.6149 -3.4363 19 1 9.0861 5.4029 -4.1360 20 6 4.9050 7.8840 -0.0003 21 6 4.6505 8.3258 1.4422 22 6 5.9853 8.6291 2.1257 23 6 3.7792 9.5835 1.4441 24 6 2.7240 3.3755 1.1972 25 6 2.2628 2.0724 1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0927 1.5598 -2.1325 32 1 2.9047 3.8844 -2.1324 33 1 3.0933 5.9619 -0.8899 34 1 3.0934 5.9618 0.8901 35 1 7.4661 7.5053 0.5126 36 1 7.4661 5.7253 0.5130 37 1 10.7684 6.6146 -0.8526 38 1 5.4938 8.6435 -0.5145 39 1 3.9524 7.7535 -0.5138 40 1 4.1390 7.5287 1.9816 41 1 6.6061 7.7332 2.1243 42 1 6.4969 9.4263 1.5863 43 1 5.8041 8.9443 3.1532 44 1 2.8283 9.3675 0.9572 45 1 3.5983 9.8986 2.4718 46 1 4.2907 10.3808 0.9047 47 1 2.9041 3.8846 2.1326 48 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741678509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:10 Heat of formation + Delta-G solvation = -56.741634 kcal Electronic energy + Delta-G solvation = -24969.665549 eV Core-core repulsion = 21601.656041 eV Total energy + Delta-G solvation = -3368.009508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12314 -39.97524 -37.76250 -35.63359 -35.22448 -34.10205 -32.27367 -31.78440 -29.89451 -27.98770 -27.90407 -26.80821 -24.97118 -23.70525 -23.61671 -21.60946 -21.29477 -19.83966 -18.66169 -17.78187 -17.50999 -16.81395 -16.74746 -16.30027 -15.93183 -15.79904 -15.46154 -14.82881 -14.61184 -14.48784 -14.47824 -14.24690 -14.11223 -13.74708 -13.61703 -13.46654 -13.10446 -13.00094 -12.89132 -12.84141 -12.64471 -12.58619 -12.44863 -12.14915 -12.07691 -12.04881 -11.82531 -11.67245 -11.63826 -11.50648 -11.49497 -10.62152 -10.60841 -9.76682 -9.37727 -9.33850 -8.21360 -6.35955 0.43736 0.55705 1.34416 1.38794 1.45940 1.88691 2.31599 2.46355 2.92501 3.07629 3.73620 3.86394 3.90047 3.96929 4.04462 4.06689 4.17162 4.20502 4.29209 4.48577 4.51112 4.57797 4.61715 4.68170 4.71357 4.76930 4.79779 4.85013 4.94630 5.05758 5.07364 5.07473 5.10488 5.14411 5.21541 5.25482 5.25830 5.31672 5.40910 5.46717 5.51889 5.54857 5.61109 5.73389 5.75197 5.90654 6.10183 6.17155 6.71998 6.84940 7.29677 7.54570 8.84933 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.004020 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.988188 B = 6964.127907 C = 8609.004875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.081 4.081 7 C -0.089 4.089 8 C 0.498 3.502 9 O -0.594 6.594 10 N -0.599 5.599 11 C 0.263 3.737 12 C -0.544 4.544 13 H 0.051 0.949 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.964 3.036 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.109 3.891 21 C -0.106 4.106 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.035 0.965 36 H -0.012 1.012 37 H 0.266 0.734 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.126 0.874 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.289 -1.899 3.385 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.139 4.139 6 C -0.082 4.082 7 C -0.128 4.128 8 C 0.287 3.713 9 O -0.475 6.475 10 N -0.330 5.330 11 C 0.142 3.858 12 C -0.582 4.582 13 H 0.069 0.931 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.789 3.211 17 H -0.183 1.183 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.013 4.013 21 C -0.126 4.126 22 C -0.205 4.205 23 C -0.194 4.194 24 C -0.135 4.135 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.144 0.856 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.770 -2.406 3.427 21.188 hybrid contribution 1.366 -0.018 -0.772 1.569 sum -19.404 -2.424 2.655 19.734 Atomic orbital electron populations 1.21709 0.93604 1.02449 1.02031 1.20577 0.97019 0.91126 1.03335 1.20191 0.98916 0.97301 0.92890 1.21200 1.00322 0.94478 0.98562 1.21174 0.99311 0.95783 0.97627 1.19511 0.99008 0.95612 0.94029 1.20745 0.89705 0.95611 1.06732 1.21212 0.90974 0.83114 0.75994 1.90654 1.71748 1.33034 1.52044 1.48206 1.07505 1.06266 1.70976 1.18779 0.75893 0.95617 0.95523 1.21742 0.92141 1.51017 0.93344 0.93050 1.25835 0.96916 0.94566 1.01809 1.70045 1.02604 1.51168 1.33007 0.85523 0.77244 0.78949 0.79431 1.18344 1.20331 1.20509 1.21877 0.97125 0.84857 0.97488 1.21536 0.96424 0.99427 0.95206 1.21899 0.97382 1.00527 1.00721 1.21731 0.99303 0.95600 1.02728 1.21178 0.99149 0.95685 0.97533 1.21221 1.00183 0.94535 0.98494 0.92837 0.92645 0.91004 0.90473 0.90708 0.84750 0.86196 0.86303 0.85792 0.94750 0.99438 0.92496 0.91274 0.88132 0.90920 0.95334 0.93288 0.91456 0.90708 0.91512 0.92550 0.85568 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.49 6.06 29.85 0.18 -1.31 16 3 C -0.09 -2.27 5.13 -19.87 -0.10 -2.38 16 4 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 5 C -0.12 -3.62 9.70 22.27 0.22 -3.40 16 6 C -0.08 -2.49 4.37 -19.86 -0.09 -2.58 16 7 C -0.09 -2.57 4.38 29.10 0.13 -2.44 16 8 C 0.50 21.18 7.67 87.66 0.67 21.85 16 9 O -0.59 -32.13 15.61 -3.03 -0.05 -32.18 16 10 N -0.60 -25.56 2.28 -826.16 -1.88 -27.45 16 11 C 0.26 14.41 4.23 85.63 0.36 14.78 16 12 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 14 C 0.01 0.44 5.46 84.66 0.46 0.91 16 15 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 16 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 20 C 0.11 3.35 4.70 86.38 0.41 3.75 16 21 C -0.11 -2.69 3.12 -10.79 -0.03 -2.72 16 22 C -0.15 -4.51 8.18 71.98 0.59 -3.92 16 23 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 24 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 25 C -0.13 -3.21 9.70 22.27 0.22 -3.00 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.12 2.84 7.34 -2.39 -0.02 2.82 16 34 H 0.12 2.80 7.21 -2.39 -0.02 2.78 16 35 H 0.03 1.90 5.98 -2.39 -0.01 1.88 16 36 H -0.01 -0.81 7.42 -2.39 -0.02 -0.82 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 39 H 0.10 2.37 6.44 -2.39 -0.02 2.35 16 40 H 0.07 1.76 7.30 -2.39 -0.02 1.74 16 41 H 0.03 1.08 5.89 -2.39 -0.01 1.07 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 48 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -77.10 387.95 6.34 -70.76 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.91 Total: 19.63 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 5.06 Total: -21.60 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -1.60 Total: -84.45 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.10 6.34 -70.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741678509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.020 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds