Wall clock time and date at job start Tue Mar 31 2020 08:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 C 1.52995 * 109.47425 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47604 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47548 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47219 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47258 * 305.00411 * 7 6 5 9 9 C 1.53000 * 109.46985 * 65.00440 * 7 6 5 10 10 C 1.50701 * 109.46812 * 185.00162 * 7 6 5 11 11 O 1.21277 * 120.00047 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99568 * 180.02562 * 10 7 6 13 13 C 1.39235 * 119.99862 * 175.70745 * 12 10 7 14 14 C 1.39470 * 119.83492 * 215.02421 * 13 12 10 15 15 C 1.36378 * 120.17102 * 179.71665 * 14 13 12 16 16 C 1.40875 * 119.82665 * 0.57895 * 15 14 13 17 17 C 1.41145 * 120.16466 * 179.67681 * 16 15 14 18 18 H 1.08001 * 120.00037 * 214.79424 * 17 16 15 19 19 C 1.39906 * 120.00517 * 34.79315 * 17 16 15 20 20 N 1.30873 * 119.99362 * 355.57407 * 19 17 16 21 21 Si 1.86796 * 120.00503 * 175.57203 * 19 17 16 22 22 H 1.48504 * 109.47144 * 59.99978 * 21 19 17 23 23 H 1.48497 * 109.47068 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47180 * 300.00305 * 21 19 17 25 25 C 1.40872 * 119.66916 * 359.69702 * 16 15 14 26 26 C 1.36378 * 119.82947 * 359.97438 * 25 16 15 27 27 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47254 * 300.00067 * 1 2 3 29 29 H 1.08995 * 109.47592 * 60.00559 * 1 2 3 30 30 H 1.08997 * 109.47254 * 239.99933 * 2 1 3 31 31 H 1.09003 * 109.47007 * 119.99593 * 2 1 3 32 32 H 1.09000 * 109.47673 * 59.99332 * 3 2 1 33 33 H 1.09003 * 109.46927 * 299.99642 * 3 2 1 34 34 H 1.08997 * 109.47172 * 59.99700 * 4 3 2 35 35 H 1.08998 * 109.46975 * 299.99954 * 4 3 2 36 36 H 1.08998 * 109.47202 * 300.00164 * 5 4 3 37 37 H 1.09006 * 109.46629 * 59.99846 * 5 4 3 38 38 H 1.08998 * 109.47442 * 300.00555 * 6 5 4 39 39 H 1.09010 * 109.46600 * 60.00060 * 6 5 4 40 40 H 1.08995 * 109.47476 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47096 * 300.00253 * 9 7 6 42 42 H 1.09004 * 109.46887 * 59.99453 * 9 7 6 43 43 H 0.96996 * 119.99775 * 355.71034 * 12 10 7 44 44 H 1.08006 * 119.91684 * 0.02562 * 14 13 12 45 45 H 1.07995 * 120.08862 * 180.25073 * 15 14 13 46 46 H 0.97004 * 119.99743 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.08348 * 179.97438 * 25 16 15 48 48 H 1.07999 * 119.91442 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0013 7 6 6.1198 4.3277 -0.0026 8 1 5.6851 4.8660 -0.8448 9 6 5.7151 5.0129 1.3042 10 6 7.6217 4.3294 -0.1265 11 8 8.2248 3.2802 -0.2063 12 7 8.2947 5.4970 -0.1485 13 6 9.6869 5.4978 -0.1727 14 6 10.3920 6.4950 0.5007 15 6 11.7557 6.4990 0.4863 16 6 12.4519 5.4994 -0.2213 17 6 13.8631 5.5007 -0.2467 18 1 14.3876 5.1750 -1.1328 19 6 14.5827 5.9238 0.8761 20 7 13.9494 6.3999 1.9178 21 14 16.4471 5.8093 0.8885 22 1 17.0006 6.6264 -0.2212 23 1 16.9656 6.3170 2.1841 24 1 16.8572 4.3929 0.7124 25 6 11.7326 4.4989 -0.9039 26 6 10.3691 4.5041 -0.8748 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9336 0.9287 0.8891 36 1 3.7162 3.3987 -0.8912 37 1 3.7169 3.3992 0.8888 38 1 5.9733 2.3717 0.8888 39 1 5.9732 2.3710 -0.8912 40 1 6.0787 6.0404 1.3036 41 1 4.6288 5.0115 1.3939 42 1 6.1498 4.4745 2.1465 43 1 7.8092 6.3367 -0.1473 44 1 9.8568 7.2632 1.0392 45 1 12.3005 7.2694 1.0116 46 1 14.4482 6.6930 2.6964 47 1 12.2595 3.7296 -1.4489 48 1 9.8162 3.7375 -1.3972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741887909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:26 Heat of formation + Delta-G solvation = -61.654830 kcal Electronic energy + Delta-G solvation = -23623.835501 eV Core-core repulsion = 20255.612940 eV Total energy + Delta-G solvation = -3368.222561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87543 -37.58334 -36.78574 -34.97287 -34.38262 -32.94049 -31.86183 -29.56328 -28.90348 -28.03409 -25.56396 -24.84287 -23.00380 -21.58498 -21.24647 -20.95246 -20.28434 -19.23307 -17.33654 -16.79788 -16.28929 -16.12069 -15.26846 -15.16051 -14.60204 -14.31545 -14.21126 -13.90707 -13.61952 -13.32314 -12.94533 -12.86644 -12.66585 -12.56147 -12.20982 -12.07197 -11.89037 -11.73683 -11.66502 -11.34440 -11.25928 -11.20907 -11.10299 -10.97186 -10.92122 -10.80624 -10.69865 -10.54955 -10.52130 -9.97307 -9.46373 -9.38054 -9.02850 -8.80631 -7.52422 -6.83345 -6.59752 -4.32209 2.59876 3.06776 3.09791 3.11502 3.13378 3.37633 3.76620 3.99644 4.44394 4.62753 4.71729 4.74898 4.81820 4.88465 4.94842 5.06247 5.19842 5.24821 5.32158 5.44339 5.49371 5.55458 5.61945 5.66577 5.68654 5.71212 5.75109 5.85973 5.90451 5.94669 5.97351 6.08320 6.13113 6.21316 6.29291 6.37572 6.47828 6.79486 6.95520 7.09323 7.24130 7.32436 7.66084 7.78305 7.90690 8.08490 8.30539 8.34476 8.64792 8.81131 8.94770 9.03189 10.31374 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.002056 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.650224 B =13615.347571 C =13915.717779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.109 4.109 8 H 0.091 0.909 9 C -0.144 4.144 10 C 0.501 3.499 11 O -0.532 6.532 12 N -0.653 5.653 13 C 0.005 3.995 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.099 3.901 17 C -0.462 4.462 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.813 5.813 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.205 4.205 26 C -0.087 4.087 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.278 0.722 47 H 0.095 0.905 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.994 -3.556 -1.337 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.137 4.137 7 C -0.131 4.131 8 H 0.110 0.890 9 C -0.202 4.202 10 C 0.288 3.712 11 O -0.408 6.408 12 N -0.295 5.295 13 C -0.087 4.087 14 C -0.142 4.142 15 C -0.161 4.161 16 C 0.096 3.904 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.440 5.440 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.225 4.225 26 C -0.107 4.107 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.228 0.772 44 H 0.108 0.892 45 H 0.149 0.851 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.522 -4.220 -1.139 20.983 hybrid contribution 0.619 0.386 0.219 0.761 sum -19.904 -3.834 -0.920 20.291 Atomic orbital electron populations 1.21781 0.96078 1.01464 1.01707 1.21552 0.95668 0.97180 1.02044 1.21629 0.95678 0.96544 1.01887 1.21607 0.94951 0.97027 1.02290 1.21669 0.95404 0.96725 1.01934 1.21391 0.94312 0.94424 1.03620 1.21304 0.92595 0.99061 1.00097 0.89042 1.21816 1.01718 1.00370 0.96255 1.20610 0.89501 0.84020 0.77092 1.90672 1.69825 1.31454 1.48885 1.43043 1.06061 1.07996 1.72441 1.17297 0.80440 1.02949 1.08036 1.20317 0.95152 0.98597 1.00178 1.21184 0.91567 1.00145 1.03181 1.17719 0.93477 0.89126 0.90051 1.19459 0.91412 1.38607 0.99812 0.90681 1.25873 1.00948 0.92653 0.95051 1.69758 1.37565 1.32192 1.04516 0.86249 0.81984 0.79572 0.78119 1.19065 1.20450 1.19124 1.20809 0.92988 1.00384 1.08347 1.20402 0.94280 0.97697 0.98291 0.92921 0.92836 0.92833 0.92075 0.92075 0.92138 0.92149 0.91963 0.91948 0.92136 0.91807 0.91296 0.91143 0.92236 0.91545 0.92044 0.77218 0.89152 0.85069 0.91131 0.88645 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 4 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 5 C -0.12 -1.05 4.97 -26.73 -0.13 -1.18 16 6 C -0.10 -1.16 4.03 -26.73 -0.11 -1.27 16 7 C -0.11 -1.30 2.72 -91.77 -0.25 -1.55 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 9 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 10 C 0.50 8.71 6.99 -10.98 -0.08 8.63 16 11 O -0.53 -11.54 13.34 5.56 0.07 -11.47 16 12 N -0.65 -11.53 5.16 -9.74 -0.05 -11.58 16 13 C 0.01 0.11 6.31 -83.57 -0.53 -0.41 16 14 C -0.12 -2.82 9.90 -39.79 -0.39 -3.21 16 15 C -0.14 -3.66 8.62 -39.25 -0.34 -4.00 16 16 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.49 9.02 -37.86 -0.34 -12.83 16 18 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.37 10.60 55.55 0.59 -20.79 16 21 Si 0.92 19.21 29.56 -169.99 -5.03 14.19 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 26 C -0.09 -2.12 8.61 -39.79 -0.34 -2.46 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.92 7.96 -51.92 -0.41 0.51 16 40 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 41 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.39 5.48 8.37 -40.82 -0.34 5.14 16 44 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 46 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 47 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 48 H 0.11 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -30.12 384.56 -10.31 -40.43 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.37 Total: 8.50 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.32 Total: -25.07 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.54 Total: -32.37 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.12 -10.31 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741887909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.229 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds