Wall clock time and date at job start Tue Mar 31 2020 08:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 C 1.52995 * 109.47425 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47604 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47548 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47219 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47258 * 305.00411 * 7 6 5 9 9 C 1.53000 * 109.46985 * 65.00440 * 7 6 5 10 10 C 1.50701 * 109.46812 * 185.00162 * 7 6 5 11 11 O 1.21277 * 120.00047 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99568 * 180.02562 * 10 7 6 13 13 C 1.39235 * 119.99862 * 175.70745 * 12 10 7 14 14 C 1.39470 * 119.83492 * 215.02421 * 13 12 10 15 15 C 1.36378 * 120.17102 * 179.71665 * 14 13 12 16 16 C 1.40875 * 119.82665 * 0.57895 * 15 14 13 17 17 C 1.41145 * 120.16466 * 179.67681 * 16 15 14 18 18 H 1.08001 * 120.00037 * 214.79424 * 17 16 15 19 19 C 1.39906 * 120.00517 * 34.79315 * 17 16 15 20 20 N 1.30873 * 119.99362 * 355.57407 * 19 17 16 21 21 Si 1.86796 * 120.00503 * 175.57203 * 19 17 16 22 22 H 1.48504 * 109.47144 * 59.99978 * 21 19 17 23 23 H 1.48497 * 109.47068 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47180 * 300.00305 * 21 19 17 25 25 C 1.40872 * 119.66916 * 359.69702 * 16 15 14 26 26 C 1.36378 * 119.82947 * 359.97438 * 25 16 15 27 27 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47254 * 300.00067 * 1 2 3 29 29 H 1.08995 * 109.47592 * 60.00559 * 1 2 3 30 30 H 1.08997 * 109.47254 * 239.99933 * 2 1 3 31 31 H 1.09003 * 109.47007 * 119.99593 * 2 1 3 32 32 H 1.09000 * 109.47673 * 59.99332 * 3 2 1 33 33 H 1.09003 * 109.46927 * 299.99642 * 3 2 1 34 34 H 1.08997 * 109.47172 * 59.99700 * 4 3 2 35 35 H 1.08998 * 109.46975 * 299.99954 * 4 3 2 36 36 H 1.08998 * 109.47202 * 300.00164 * 5 4 3 37 37 H 1.09006 * 109.46629 * 59.99846 * 5 4 3 38 38 H 1.08998 * 109.47442 * 300.00555 * 6 5 4 39 39 H 1.09010 * 109.46600 * 60.00060 * 6 5 4 40 40 H 1.08995 * 109.47476 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47096 * 300.00253 * 9 7 6 42 42 H 1.09004 * 109.46887 * 59.99453 * 9 7 6 43 43 H 0.96996 * 119.99775 * 355.71034 * 12 10 7 44 44 H 1.08006 * 119.91684 * 0.02562 * 14 13 12 45 45 H 1.07995 * 120.08862 * 180.25073 * 15 14 13 46 46 H 0.97004 * 119.99743 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.08348 * 179.97438 * 25 16 15 48 48 H 1.07999 * 119.91442 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0013 7 6 6.1198 4.3277 -0.0026 8 1 5.6851 4.8660 -0.8448 9 6 5.7151 5.0129 1.3042 10 6 7.6217 4.3294 -0.1265 11 8 8.2248 3.2802 -0.2063 12 7 8.2947 5.4970 -0.1485 13 6 9.6869 5.4978 -0.1727 14 6 10.3920 6.4950 0.5007 15 6 11.7557 6.4990 0.4863 16 6 12.4519 5.4994 -0.2213 17 6 13.8631 5.5007 -0.2467 18 1 14.3876 5.1750 -1.1328 19 6 14.5827 5.9238 0.8761 20 7 13.9494 6.3999 1.9178 21 14 16.4471 5.8093 0.8885 22 1 17.0006 6.6264 -0.2212 23 1 16.9656 6.3170 2.1841 24 1 16.8572 4.3929 0.7124 25 6 11.7326 4.4989 -0.9039 26 6 10.3691 4.5041 -0.8748 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9336 0.9287 0.8891 36 1 3.7162 3.3987 -0.8912 37 1 3.7169 3.3992 0.8888 38 1 5.9733 2.3717 0.8888 39 1 5.9732 2.3710 -0.8912 40 1 6.0787 6.0404 1.3036 41 1 4.6288 5.0115 1.3939 42 1 6.1498 4.4745 2.1465 43 1 7.8092 6.3367 -0.1473 44 1 9.8568 7.2632 1.0392 45 1 12.3005 7.2694 1.0116 46 1 14.4482 6.6930 2.6964 47 1 12.2595 3.7296 -1.4489 48 1 9.8162 3.7375 -1.3972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741887909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:25 Heat of formation + Delta-G solvation = -76.058716 kcal Electronic energy + Delta-G solvation = -23624.460100 eV Core-core repulsion = 20255.612940 eV Total energy + Delta-G solvation = -3368.847160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36747 -39.26021 -37.69462 -36.18483 -35.78437 -34.69106 -32.68808 -31.48622 -30.69480 -28.84322 -27.04450 -25.98585 -24.17716 -23.18207 -22.47510 -21.83210 -21.57640 -20.58092 -19.27852 -18.30422 -17.75016 -17.01573 -16.89378 -16.34766 -15.79475 -15.63380 -15.41645 -14.99259 -14.78748 -14.52219 -14.37586 -14.09044 -13.96588 -13.66507 -13.52651 -13.36547 -13.22850 -12.95433 -12.87887 -12.75331 -12.57708 -12.45472 -12.41328 -11.95792 -11.91170 -11.78326 -11.69108 -11.45422 -11.39834 -11.27018 -11.23681 -11.20131 -10.73393 -10.45994 -9.47940 -8.73315 -8.51049 -6.33945 0.79575 1.12271 1.38851 1.46605 1.50970 1.82347 2.23425 2.38221 2.80204 3.64271 3.71719 3.74987 3.96891 4.10974 4.13213 4.21657 4.36220 4.37354 4.44130 4.53556 4.55170 4.65358 4.69572 4.85697 4.89363 4.92702 4.96373 5.01227 5.02815 5.06033 5.13242 5.14210 5.17933 5.24839 5.25440 5.34460 5.34735 5.39405 5.43652 5.48279 5.55119 5.58995 5.68535 5.90711 6.02204 6.13400 6.38336 6.66369 6.75395 6.95717 6.99325 7.42996 8.41621 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.002056 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.650224 B =13615.347571 C =13915.717779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.097 4.097 7 C -0.096 4.096 8 H 0.124 0.876 9 C -0.142 4.142 10 C 0.496 3.504 11 O -0.579 6.579 12 N -0.645 5.645 13 C 0.021 3.979 14 C -0.120 4.120 15 C -0.158 4.158 16 C 0.066 3.934 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.028 3.972 20 N -0.842 5.842 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.266 1.266 25 C -0.222 4.222 26 C -0.100 4.100 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.417 0.583 44 H 0.126 0.874 45 H 0.120 0.880 46 H 0.285 0.715 47 H 0.094 0.906 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 -2.457 -0.923 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.152 4.152 4 C -0.160 4.160 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.118 4.118 8 H 0.142 0.858 9 C -0.199 4.199 10 C 0.286 3.714 11 O -0.459 6.459 12 N -0.290 5.290 13 C -0.073 4.073 14 C -0.140 4.140 15 C -0.178 4.178 16 C 0.063 3.937 17 C -0.531 4.531 18 H 0.090 0.910 19 C -0.184 4.184 20 N -0.469 5.469 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.242 4.242 26 C -0.120 4.120 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.725 -3.094 -0.730 22.946 hybrid contribution 1.129 -0.008 0.072 1.132 sum -21.596 -3.102 -0.658 21.827 Atomic orbital electron populations 1.21772 0.95333 1.01802 1.02019 1.21568 0.96345 0.97075 1.01711 1.21585 0.94493 0.96747 1.02414 1.21600 0.95971 0.96853 1.01540 1.21609 0.92720 0.97121 1.03294 1.21366 0.96580 0.93927 1.01684 1.21354 0.87933 0.99880 1.02585 0.85826 1.21851 1.03662 1.00337 0.94050 1.21711 0.91794 0.82852 0.75059 1.90659 1.71360 1.33186 1.50664 1.43001 1.04106 1.09614 1.72265 1.17371 0.82901 1.01291 1.05704 1.20576 0.94323 0.99358 0.99729 1.21177 0.92904 0.99936 1.03759 1.18040 0.94216 0.90098 0.91311 1.19699 0.91915 1.40695 1.00745 0.90972 1.26741 1.05846 0.91698 0.94119 1.69821 1.39499 1.32548 1.05073 0.85149 0.75629 0.79496 0.78747 1.18160 1.19138 1.19106 1.20927 0.93838 1.00534 1.08858 1.20517 0.93913 0.98517 0.99043 0.92642 0.92503 0.92514 0.92465 0.92447 0.91527 0.91595 0.92814 0.92765 0.90701 0.90316 0.93343 0.93191 0.91054 0.88478 0.93797 0.74556 0.85654 0.86276 0.90448 0.88768 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.13 -1.62 5.93 30.59 0.18 -1.43 16 3 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 4 C -0.12 -1.87 5.21 30.59 0.16 -1.71 16 5 C -0.11 -1.62 4.97 30.59 0.15 -1.47 16 6 C -0.10 -2.14 4.03 30.59 0.12 -2.02 16 7 C -0.10 -2.04 2.72 -11.54 -0.03 -2.08 16 8 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 9 C -0.14 -2.36 8.85 71.98 0.64 -1.72 16 10 C 0.50 16.61 6.99 87.66 0.61 17.22 16 11 O -0.58 -25.37 13.34 -3.02 -0.04 -25.41 16 12 N -0.65 -21.52 5.16 -303.11 -1.57 -23.09 16 13 C 0.02 0.93 6.31 38.56 0.24 1.18 16 14 C -0.12 -5.44 9.90 22.13 0.22 -5.22 16 15 C -0.16 -8.36 8.62 22.48 0.19 -8.17 16 16 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 17 C -0.50 -28.02 9.02 23.39 0.21 -27.81 16 18 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 19 C 0.03 1.45 5.42 85.24 0.46 1.91 16 20 N -0.84 -45.01 10.60 21.82 0.23 -44.78 16 21 Si 0.99 39.70 29.56 68.60 2.03 41.72 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 C -0.22 -11.90 9.74 22.48 0.22 -11.68 16 26 C -0.10 -4.98 8.61 22.14 0.19 -4.79 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.96 6.57 -2.38 -0.02 0.94 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.29 7.96 -2.38 -0.02 1.28 16 40 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 41 H 0.10 1.07 6.57 -2.39 -0.02 1.06 16 42 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.42 10.17 8.37 -92.71 -0.78 9.40 16 44 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.12 6.55 6.13 -2.91 -0.02 6.53 16 46 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 47 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 48 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -68.27 384.56 5.13 -63.14 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.15 Total: 34.77 kcal Atomic # 6 Polarization: -50.68 SS G_CDS: 4.33 Total: -46.35 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.33 Total: -67.87 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.04 Total: -25.41 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.72 kcal Total: -68.27 5.13 -63.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741887909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.915 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds