Wall clock time and date at job start Tue Mar 31 2020 08:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47458 * 2 1 4 4 C 1.52994 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46785 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46726 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47475 * 55.00396 * 7 6 5 9 9 C 1.53002 * 109.47407 * 295.00234 * 7 6 5 10 10 C 1.50703 * 109.46969 * 175.00346 * 7 6 5 11 11 O 1.21276 * 120.00109 * 6.54598 * 10 7 6 12 12 N 1.34780 * 119.99797 * 186.54778 * 10 7 6 13 13 C 1.37138 * 120.00335 * 5.87699 * 12 10 7 14 14 H 1.07999 * 119.99998 * 25.11960 * 13 12 10 15 15 C 1.38891 * 120.00349 * 205.12081 * 13 12 10 16 16 N 1.31423 * 119.99532 * 5.83040 * 15 13 12 17 17 Si 1.86794 * 120.00153 * 185.82777 * 15 13 12 18 18 H 1.48504 * 109.46768 * 60.00264 * 17 15 13 19 19 H 1.48502 * 109.47032 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47495 * 300.00344 * 17 15 13 21 21 C 1.39788 * 119.99522 * 185.87990 * 12 10 7 22 22 C 1.38963 * 120.07369 * 245.22668 * 21 12 10 23 23 C 1.38085 * 119.91719 * 179.79241 * 22 21 12 24 24 C 1.38305 * 120.07981 * 0.46884 * 23 22 21 25 25 C 1.38306 * 120.15755 * 359.78453 * 24 23 22 26 26 C 1.38081 * 120.07656 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47154 * 300.00477 * 1 2 3 28 28 H 1.09004 * 109.47130 * 60.00315 * 1 2 3 29 29 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47213 * 239.99535 * 2 1 3 31 31 H 1.09005 * 109.47088 * 120.00469 * 2 1 3 32 32 H 1.08997 * 109.46803 * 59.99611 * 3 2 1 33 33 H 1.09004 * 109.46692 * 299.99953 * 3 2 1 34 34 H 1.09007 * 109.47139 * 60.00443 * 4 3 2 35 35 H 1.08992 * 109.47388 * 300.00081 * 4 3 2 36 36 H 1.08997 * 109.46651 * 60.00480 * 5 4 3 37 37 H 1.08995 * 109.47225 * 299.99882 * 5 4 3 38 38 H 1.08997 * 109.46947 * 60.00890 * 6 5 4 39 39 H 1.08992 * 109.47628 * 300.00475 * 6 5 4 40 40 H 1.09000 * 109.47251 * 295.08937 * 9 7 6 41 41 H 1.09003 * 109.46982 * 175.08734 * 9 7 6 42 42 H 1.08994 * 109.46871 * 55.09092 * 9 7 6 43 43 H 0.96998 * 119.99693 * 184.99920 * 16 15 13 44 44 H 1.08001 * 120.04367 * 0.02647 * 22 21 12 45 45 H 1.08001 * 119.95890 * 180.22781 * 23 22 21 46 46 H 1.08001 * 119.92524 * 179.76444 * 24 23 22 47 47 H 1.07995 * 119.96683 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.04227 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 0.0013 7 6 6.1201 4.3273 0.0013 8 1 5.6848 4.8666 0.8426 9 6 5.7164 5.0110 -1.3066 10 6 7.6219 4.3291 0.1263 11 8 8.2348 3.2833 0.0879 12 7 8.2838 5.4929 0.2808 13 6 7.5862 6.6621 0.4451 14 1 6.5851 6.6412 0.8498 15 6 8.1670 7.8731 0.0912 16 7 9.3373 7.8907 -0.5063 17 14 7.2845 9.4766 0.4645 18 1 7.0720 9.5952 1.9295 19 1 8.1089 10.6172 -0.0095 20 1 5.9715 9.4922 -0.2290 21 6 9.6816 5.5082 0.2734 22 6 10.3802 5.8673 1.4198 23 6 11.7610 5.8772 1.4101 24 6 12.4486 5.5396 0.2586 25 6 11.7565 5.1868 -0.8857 26 6 10.3758 5.1699 -0.8819 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7171 3.3982 -0.8904 38 1 5.9741 2.3704 -0.8881 39 1 5.9727 2.3716 0.8918 40 1 6.2214 4.5252 -2.1415 41 1 6.0029 6.0621 -1.2705 42 1 4.6374 4.9329 -1.4394 43 1 9.7763 8.7363 -0.6882 44 1 9.8439 6.1347 2.3183 45 1 12.3046 6.1526 2.3018 46 1 13.5285 5.5518 0.2527 47 1 12.2965 4.9241 -1.7833 48 1 9.8359 4.8947 -1.7759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741910744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:29 Heat of formation + Delta-G solvation = -41.634710 kcal Electronic energy + Delta-G solvation = -24962.916357 eV Core-core repulsion = 21595.561934 eV Total energy + Delta-G solvation = -3367.354423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52402 -37.60519 -36.52057 -34.80811 -34.40673 -31.70435 -31.49525 -29.82168 -28.82235 -27.54232 -25.11432 -24.65860 -23.00446 -21.53427 -21.34166 -20.97178 -20.05329 -18.88614 -17.46783 -16.24975 -15.90531 -15.50310 -14.83384 -14.65690 -14.43747 -14.30722 -14.05514 -13.77815 -13.44519 -13.17395 -12.81912 -12.75841 -12.37944 -12.35620 -11.97724 -11.84680 -11.63490 -11.51821 -11.39221 -11.26713 -11.16911 -10.96246 -10.84353 -10.80835 -10.55751 -10.52915 -10.46666 -10.23034 -10.19838 -10.03947 -10.02673 -9.32256 -8.46881 -8.22120 -7.79985 -7.39150 -6.19942 -4.08368 2.52772 2.55870 3.09237 3.17286 3.18235 3.80565 4.03218 4.52897 4.77520 4.82933 4.87557 4.99367 5.15919 5.18385 5.32694 5.41685 5.49769 5.63589 5.66775 5.75748 5.78864 5.84348 5.88854 5.93688 5.97431 6.01583 6.02785 6.07273 6.13572 6.16924 6.27467 6.32497 6.39299 6.47081 6.54689 6.57561 6.61096 6.68207 6.87592 6.91189 7.05838 7.09960 7.33280 7.40620 7.51257 7.66804 7.81932 8.04966 8.45669 9.00559 9.38457 9.81210 10.63987 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003484 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.068766 B = 8034.408467 C = 9301.692097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.097 4.097 7 C -0.088 4.088 8 H 0.083 0.917 9 C -0.139 4.139 10 C 0.476 3.524 11 O -0.591 6.591 12 N -0.414 5.414 13 C -0.345 4.345 14 H 0.099 0.901 15 C 0.044 3.956 16 N -0.850 5.850 17 Si 0.918 3.082 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.246 3.754 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.155 4.155 25 C -0.117 4.117 26 C -0.091 4.091 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.272 0.728 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -6.253 0.461 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.135 4.135 7 C -0.109 4.109 8 H 0.101 0.899 9 C -0.197 4.197 10 C 0.266 3.734 11 O -0.476 6.476 12 N -0.129 5.129 13 C -0.471 4.471 14 H 0.116 0.884 15 C -0.163 4.163 16 N -0.485 5.485 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.154 3.846 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.174 4.174 25 C -0.136 4.136 26 C -0.111 4.111 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.436 -6.593 0.294 10.711 hybrid contribution -0.313 1.263 0.177 1.313 sum -8.749 -5.330 0.471 10.256 Atomic orbital electron populations 1.21783 0.96203 1.01306 1.01720 1.21553 0.95539 0.97364 1.01923 1.21636 0.95949 0.96293 1.01900 1.21606 0.94666 0.97450 1.01986 1.21679 0.96077 0.96104 1.01907 1.21370 0.93655 0.95799 1.02683 1.20943 0.93158 0.96719 1.00057 0.89876 1.21734 0.99685 1.02808 0.95454 1.20405 0.89751 0.83253 0.79996 1.90560 1.69901 1.31734 1.55390 1.41317 1.02434 1.06858 1.62267 1.19473 1.01038 0.82938 1.43693 0.88367 1.25324 0.96520 0.99621 0.94878 1.69845 1.14551 1.27425 1.36678 0.86136 0.79283 0.81226 0.78920 1.19887 1.20848 1.19652 1.17219 0.83355 0.92056 0.91937 1.20868 0.93610 1.02048 0.97539 1.20654 0.93882 1.01725 0.97452 1.20680 0.98205 1.04520 0.93950 1.20653 0.93881 1.01635 0.97400 1.20731 0.93572 1.00305 0.96446 0.92844 0.92848 0.93039 0.92152 0.92155 0.92170 0.92155 0.92148 0.92175 0.92305 0.91824 0.91847 0.91990 0.93495 0.90049 0.93067 0.91675 0.87521 0.87786 0.87929 0.87746 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 5 C -0.12 -1.57 4.97 -26.73 -0.13 -1.70 16 6 C -0.10 -1.62 3.99 -26.73 -0.11 -1.72 16 7 C -0.09 -1.67 1.93 -91.77 -0.18 -1.84 16 8 H 0.08 1.53 7.11 -51.93 -0.37 1.16 16 9 C -0.14 -2.48 8.84 37.16 0.33 -2.15 16 10 C 0.48 11.30 6.78 -10.98 -0.07 11.23 16 11 O -0.59 -15.50 15.70 5.56 0.09 -15.42 16 12 N -0.41 -10.28 2.69 -58.98 -0.16 -10.44 16 13 C -0.34 -8.36 7.12 -14.94 -0.11 -8.47 16 14 H 0.10 2.23 6.38 -52.49 -0.33 1.90 16 15 C 0.04 1.07 5.24 -17.48 -0.09 0.98 16 16 N -0.85 -21.89 10.60 55.49 0.59 -21.30 16 17 Si 0.92 19.03 29.56 -169.99 -5.02 14.00 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.25 6.17 2.59 -83.69 -0.22 5.96 16 22 C -0.12 -2.84 9.26 -39.37 -0.36 -3.21 16 23 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 24 C -0.16 -3.09 10.04 -39.53 -0.40 -3.48 16 25 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 26 C -0.09 -2.20 8.89 -39.37 -0.35 -2.55 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.80 6.47 -51.93 -0.34 0.47 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.60 6.36 -51.93 -0.33 1.27 16 42 H 0.05 0.75 6.35 -51.93 -0.33 0.43 16 43 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 44 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 48 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -28.04 382.89 -9.73 -37.77 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.44 Total: 7.22 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.55 Total: -17.61 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.43 Total: -31.74 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.04 -9.73 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741910744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.861 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds