Wall clock time and date at job start Tue Mar 31 2020 08:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47458 * 2 1 4 4 C 1.52994 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46785 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46726 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47475 * 55.00396 * 7 6 5 9 9 C 1.53002 * 109.47407 * 295.00234 * 7 6 5 10 10 C 1.50703 * 109.46969 * 175.00346 * 7 6 5 11 11 O 1.21276 * 120.00109 * 6.54598 * 10 7 6 12 12 N 1.34780 * 119.99797 * 186.54778 * 10 7 6 13 13 C 1.37138 * 120.00335 * 5.87699 * 12 10 7 14 14 H 1.07999 * 119.99998 * 25.11960 * 13 12 10 15 15 C 1.38891 * 120.00349 * 205.12081 * 13 12 10 16 16 N 1.31423 * 119.99532 * 5.83040 * 15 13 12 17 17 Si 1.86794 * 120.00153 * 185.82777 * 15 13 12 18 18 H 1.48504 * 109.46768 * 60.00264 * 17 15 13 19 19 H 1.48502 * 109.47032 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47495 * 300.00344 * 17 15 13 21 21 C 1.39788 * 119.99522 * 185.87990 * 12 10 7 22 22 C 1.38963 * 120.07369 * 245.22668 * 21 12 10 23 23 C 1.38085 * 119.91719 * 179.79241 * 22 21 12 24 24 C 1.38305 * 120.07981 * 0.46884 * 23 22 21 25 25 C 1.38306 * 120.15755 * 359.78453 * 24 23 22 26 26 C 1.38081 * 120.07656 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47154 * 300.00477 * 1 2 3 28 28 H 1.09004 * 109.47130 * 60.00315 * 1 2 3 29 29 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47213 * 239.99535 * 2 1 3 31 31 H 1.09005 * 109.47088 * 120.00469 * 2 1 3 32 32 H 1.08997 * 109.46803 * 59.99611 * 3 2 1 33 33 H 1.09004 * 109.46692 * 299.99953 * 3 2 1 34 34 H 1.09007 * 109.47139 * 60.00443 * 4 3 2 35 35 H 1.08992 * 109.47388 * 300.00081 * 4 3 2 36 36 H 1.08997 * 109.46651 * 60.00480 * 5 4 3 37 37 H 1.08995 * 109.47225 * 299.99882 * 5 4 3 38 38 H 1.08997 * 109.46947 * 60.00890 * 6 5 4 39 39 H 1.08992 * 109.47628 * 300.00475 * 6 5 4 40 40 H 1.09000 * 109.47251 * 295.08937 * 9 7 6 41 41 H 1.09003 * 109.46982 * 175.08734 * 9 7 6 42 42 H 1.08994 * 109.46871 * 55.09092 * 9 7 6 43 43 H 0.96998 * 119.99693 * 184.99920 * 16 15 13 44 44 H 1.08001 * 120.04367 * 0.02647 * 22 21 12 45 45 H 1.08001 * 119.95890 * 180.22781 * 23 22 21 46 46 H 1.08001 * 119.92524 * 179.76444 * 24 23 22 47 47 H 1.07995 * 119.96683 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.04227 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 0.0013 7 6 6.1201 4.3273 0.0013 8 1 5.6848 4.8666 0.8426 9 6 5.7164 5.0110 -1.3066 10 6 7.6219 4.3291 0.1263 11 8 8.2348 3.2833 0.0879 12 7 8.2838 5.4929 0.2808 13 6 7.5862 6.6621 0.4451 14 1 6.5851 6.6412 0.8498 15 6 8.1670 7.8731 0.0912 16 7 9.3373 7.8907 -0.5063 17 14 7.2845 9.4766 0.4645 18 1 7.0720 9.5952 1.9295 19 1 8.1089 10.6172 -0.0095 20 1 5.9715 9.4922 -0.2290 21 6 9.6816 5.5082 0.2734 22 6 10.3802 5.8673 1.4198 23 6 11.7610 5.8772 1.4101 24 6 12.4486 5.5396 0.2586 25 6 11.7565 5.1868 -0.8857 26 6 10.3758 5.1699 -0.8819 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7171 3.3982 -0.8904 38 1 5.9741 2.3704 -0.8881 39 1 5.9727 2.3716 0.8918 40 1 6.2214 4.5252 -2.1415 41 1 6.0029 6.0621 -1.2705 42 1 4.6374 4.9329 -1.4394 43 1 9.7763 8.7363 -0.6882 44 1 9.8439 6.1347 2.3183 45 1 12.3046 6.1526 2.3018 46 1 13.5285 5.5518 0.2527 47 1 12.2965 4.9241 -1.7833 48 1 9.8359 4.8947 -1.7759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741910744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:28 Heat of formation + Delta-G solvation = -52.721812 kcal Electronic energy + Delta-G solvation = -24963.397130 eV Core-core repulsion = 21595.561934 eV Total energy + Delta-G solvation = -3367.835196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31348 -39.25842 -37.61341 -36.59670 -35.65546 -33.53763 -32.64393 -31.54834 -30.44096 -28.69832 -26.93720 -25.99252 -24.38143 -23.21617 -22.65082 -21.81528 -21.47431 -20.65496 -19.19155 -17.97593 -17.26634 -16.82223 -16.60487 -16.18362 -16.13978 -15.69570 -15.31613 -14.89918 -14.84714 -14.58469 -14.30513 -14.08841 -13.92137 -13.47896 -13.42344 -13.30296 -13.17083 -12.90342 -12.83105 -12.70423 -12.48104 -12.33479 -12.23788 -12.06018 -11.95257 -11.85255 -11.79980 -11.63817 -11.41612 -11.25028 -11.18555 -11.13239 -10.30303 -10.05592 -9.54218 -9.19687 -8.04027 -5.99209 0.79384 0.82301 1.44399 1.47593 1.55924 1.98866 2.29932 2.89624 3.09042 3.35212 3.81648 3.98694 4.05286 4.16852 4.23253 4.26765 4.27575 4.29613 4.40857 4.43494 4.57391 4.60684 4.71775 4.73737 4.80893 4.86963 4.90135 4.95760 4.99720 5.04645 5.06129 5.14123 5.15543 5.23317 5.26329 5.32331 5.36680 5.38841 5.43516 5.48813 5.52599 5.58745 5.63308 5.69289 5.79968 5.87390 6.04896 6.28928 6.61372 7.12731 7.53652 7.95972 8.78215 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003484 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.068766 B = 8034.408467 C = 9301.692097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.088 4.088 7 C -0.082 4.082 8 H 0.092 0.908 9 C -0.129 4.129 10 C 0.459 3.541 11 O -0.627 6.627 12 N -0.423 5.423 13 C -0.355 4.355 14 H 0.110 0.890 15 C 0.004 3.996 16 N -0.877 5.877 17 Si 0.982 3.018 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.260 1.260 21 C 0.219 3.781 22 C -0.145 4.145 23 C -0.115 4.115 24 C -0.149 4.149 25 C -0.118 4.118 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.133 0.867 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -5.657 0.873 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.153 4.153 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.126 4.126 7 C -0.103 4.103 8 H 0.110 0.890 9 C -0.187 4.187 10 C 0.251 3.749 11 O -0.514 6.514 12 N -0.138 5.138 13 C -0.481 4.481 14 H 0.127 0.873 15 C -0.200 4.200 16 N -0.512 5.512 17 Si 0.806 3.194 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.184 1.184 21 C 0.127 3.873 22 C -0.165 4.165 23 C -0.133 4.133 24 C -0.168 4.168 25 C -0.136 4.136 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.151 0.849 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.239 -5.999 0.710 11.038 hybrid contribution 0.045 1.036 0.047 1.038 sum -9.194 -4.963 0.756 10.475 Atomic orbital electron populations 1.21773 0.95278 1.01890 1.01961 1.21552 0.96360 0.96678 1.01870 1.21592 0.94388 0.97071 1.02277 1.21572 0.96018 0.96180 1.01701 1.21617 0.92919 0.97528 1.02777 1.21293 0.96329 0.93770 1.01217 1.20999 0.89832 0.98558 1.00951 0.89037 1.21654 1.01842 1.00977 0.94182 1.21305 0.91754 0.82584 0.79262 1.90511 1.71136 1.32775 1.57013 1.41595 1.02858 1.07358 1.61959 1.19811 1.01545 0.83042 1.43664 0.87287 1.26111 0.97042 1.02379 0.94518 1.70017 1.15912 1.27619 1.37669 0.85147 0.78429 0.76998 0.78824 1.19392 1.21452 1.18419 1.17553 0.83793 0.93138 0.92818 1.21001 0.95156 1.03449 0.96935 1.21090 0.92892 1.00163 0.99197 1.21152 1.00345 1.02500 0.92752 1.21046 0.92810 1.00492 0.99265 1.20767 0.95140 1.02413 0.95688 0.92617 0.92591 0.92345 0.92225 0.92275 0.91816 0.91709 0.92452 0.92574 0.91419 0.90811 0.93291 0.93556 0.94764 0.92047 0.89341 0.92210 0.88326 0.84316 0.83590 0.84882 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.05 5.93 30.59 0.18 -1.87 16 3 C -0.12 -2.06 5.21 30.59 0.16 -1.90 16 4 C -0.12 -2.54 5.21 30.59 0.16 -2.38 16 5 C -0.11 -2.74 4.97 30.60 0.15 -2.59 16 6 C -0.09 -2.95 3.99 30.59 0.12 -2.83 16 7 C -0.08 -3.17 1.93 -11.54 -0.02 -3.19 16 8 H 0.09 3.35 7.11 -2.39 -0.02 3.33 16 9 C -0.13 -4.57 8.84 71.98 0.64 -3.93 16 10 C 0.46 22.71 6.78 87.66 0.59 23.30 16 11 O -0.63 -34.55 15.70 -3.02 -0.05 -34.60 16 12 N -0.42 -21.80 2.69 -458.89 -1.24 -23.03 16 13 C -0.35 -17.46 7.12 84.02 0.60 -16.87 16 14 H 0.11 4.96 6.38 -2.91 -0.02 4.95 16 15 C 0.00 0.19 5.24 84.91 0.44 0.64 16 16 N -0.88 -45.92 10.60 21.65 0.23 -45.69 16 17 Si 0.98 38.81 29.56 68.60 2.03 40.83 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 19 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 C 0.22 11.32 2.59 38.22 0.10 11.42 16 22 C -0.15 -6.95 9.26 22.41 0.21 -6.74 16 23 C -0.12 -4.60 10.04 22.25 0.22 -4.37 16 24 C -0.15 -5.60 10.04 22.30 0.22 -5.38 16 25 C -0.12 -4.90 10.04 22.25 0.22 -4.68 16 26 C -0.12 -6.02 8.89 22.41 0.20 -5.82 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.68 6.47 -2.39 -0.02 1.67 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.68 8.05 -2.39 -0.02 1.66 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.06 2.42 6.36 -2.39 -0.02 2.41 16 42 H 0.09 2.44 6.35 -2.39 -0.02 2.42 16 43 H 0.27 13.60 8.32 -92.71 -0.77 12.83 16 44 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 45 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 47 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 48 H 0.08 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.82 382.89 6.79 -56.04 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.90 Total: 35.03 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.92 Total: -28.57 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.01 Total: -68.73 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.60 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -62.82 6.79 -56.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741910744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.313 kcal (2) G-P(sol) polarization free energy of solvation -62.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds