Wall clock time and date at job start Tue Mar 31 2020 08:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47236 * 2 1 4 4 C 1.53000 * 109.50391 * 300.00457 * 3 2 1 5 5 C 1.53119 * 109.53029 * 60.10079 * 3 2 1 6 6 C 1.53119 * 109.15757 * 177.61866 * 5 3 2 7 7 C 1.53039 * 109.27670 * 302.34153 * 6 5 3 8 8 N 1.46843 * 109.52235 * 59.18424 * 7 6 5 9 9 C 1.46900 * 111.00073 * 174.16143 * 8 7 6 10 10 C 1.50700 * 109.47016 * 314.20569 * 9 8 7 11 11 C 1.38303 * 119.93120 * 269.72922 * 10 9 8 12 12 C 1.38100 * 120.06682 * 179.72648 * 11 10 9 13 13 C 1.38878 * 119.93120 * 0.56805 * 12 11 10 14 14 O 1.35751 * 120.07002 * 179.68090 * 13 12 11 15 15 C 1.34830 * 117.00102 * 174.48379 * 14 13 12 16 16 H 1.08000 * 119.99787 * 5.06561 * 15 14 13 17 17 C 1.38647 * 120.00434 * 185.05772 * 15 14 13 18 18 N 1.31560 * 119.99684 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00631 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47221 * 90.00067 * 19 17 15 21 21 H 1.48498 * 109.47384 * 210.00590 * 19 17 15 22 22 H 1.48504 * 109.46641 * 330.00422 * 19 17 15 23 23 C 1.38885 * 119.86192 * 359.70240 * 13 12 11 24 24 C 1.38101 * 119.92691 * 0.02562 * 23 13 12 25 25 C 1.46851 * 111.19622 * 298.25780 * 8 7 6 26 26 H 1.08999 * 109.47191 * 299.99414 * 1 2 3 27 27 H 1.09001 * 109.47655 * 59.99886 * 1 2 3 28 28 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46922 * 240.00107 * 2 1 3 30 30 H 1.08997 * 109.47002 * 120.00432 * 2 1 3 31 31 H 1.09000 * 109.47119 * 299.91688 * 4 3 2 32 32 H 1.09003 * 109.46924 * 179.91805 * 4 3 2 33 33 H 1.09003 * 109.47353 * 59.91715 * 4 3 2 34 34 H 1.08998 * 109.52556 * 297.51568 * 5 3 2 35 35 H 1.08996 * 109.53053 * 57.70857 * 5 3 2 36 36 H 1.09009 * 109.50644 * 182.40315 * 6 5 3 37 37 H 1.09002 * 109.53991 * 62.30380 * 6 5 3 38 38 H 1.08999 * 109.46424 * 299.16749 * 7 6 5 39 39 H 1.09005 * 109.45188 * 179.19260 * 7 6 5 40 40 H 1.09002 * 109.47310 * 74.20916 * 9 8 7 41 41 H 1.09001 * 109.46809 * 194.20572 * 9 8 7 42 42 H 1.07994 * 119.96639 * 359.97438 * 11 10 9 43 43 H 1.08000 * 120.03146 * 180.27217 * 12 11 10 44 44 H 0.97006 * 120.00166 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.03501 * 180.02562 * 23 13 12 46 46 H 1.08007 * 119.96099 * 179.97438 * 24 23 13 47 47 H 1.09006 * 109.45781 * 301.72627 * 25 8 7 48 48 H 1.09003 * 109.46301 * 181.76305 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5303 2.1645 -1.2489 5 6 1.5324 2.1649 1.2510 6 6 2.0961 3.5884 1.2727 7 6 3.6248 3.5271 1.2378 8 7 4.0603 2.8276 0.0223 9 6 5.5222 2.8706 -0.1147 10 6 6.0110 4.2705 0.1546 11 6 6.1233 5.1744 -0.8862 12 6 6.5655 6.4596 -0.6417 13 6 6.9088 6.8405 0.6490 14 8 7.3500 8.1012 0.8914 15 6 7.5569 8.4401 2.1799 16 1 7.4509 7.6979 2.9572 17 6 7.9059 9.7415 2.5071 18 7 8.0348 10.6457 1.5603 19 14 8.1933 10.2109 4.2922 20 1 9.6237 10.0051 4.6341 21 1 7.8370 11.6386 4.4921 22 1 7.3476 9.3621 5.1694 23 6 6.8003 5.9288 1.6910 24 6 6.3521 4.6467 1.4409 25 6 3.5703 1.4434 0.0020 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8948 1.6519 -2.1391 32 1 1.8928 3.1925 -1.2476 33 1 0.4403 2.1636 -1.2498 34 1 0.4434 2.2047 1.2320 35 1 1.8628 1.6287 2.1406 36 1 1.7729 4.0940 2.1827 37 1 1.7339 4.1372 0.4033 38 1 3.9869 2.9908 2.1149 39 1 4.0289 4.5395 1.2387 40 1 5.9746 2.1838 0.6007 41 1 5.8010 2.5768 -1.1267 42 1 5.8611 4.8760 -1.8904 43 1 6.6488 7.1663 -1.4541 44 1 8.2793 11.5561 1.7891 45 1 7.0661 6.2222 2.6959 46 1 6.2678 3.9371 2.2508 47 1 3.9327 0.9169 0.8850 48 1 3.9350 0.9422 -0.8947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743860716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:49 Heat of formation + Delta-G solvation = -16.614877 kcal Electronic energy + Delta-G solvation = -25090.683171 eV Core-core repulsion = 21724.413689 eV Total energy + Delta-G solvation = -3366.269482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.03136 -38.93749 -36.98163 -35.17989 -32.59034 -32.18723 -30.39797 -30.07532 -29.22074 -26.94927 -26.00740 -25.18399 -23.77785 -22.84470 -21.95695 -21.06897 -19.97847 -18.27907 -17.96722 -16.91397 -16.05295 -15.31543 -15.06001 -14.84426 -14.54388 -14.50094 -14.23470 -14.02632 -13.71717 -13.59919 -13.40369 -13.35378 -12.68559 -12.51771 -12.42399 -12.24114 -12.02937 -11.86822 -11.67399 -11.52976 -11.40922 -11.32245 -11.12622 -10.79676 -10.68182 -10.63696 -10.62494 -10.44085 -10.42062 -10.10069 -10.02983 -9.32844 -8.83150 -8.16548 -8.10423 -7.14858 -6.45194 -4.04013 2.22630 2.28708 3.12043 3.13139 3.17918 3.96218 4.04533 4.54826 4.62291 4.70667 4.74718 5.03646 5.09672 5.13344 5.19481 5.27228 5.29419 5.35794 5.42310 5.46825 5.54653 5.57332 5.61887 5.66087 5.73952 5.78948 5.79279 5.84191 5.88108 5.92511 5.96316 6.00574 6.03510 6.14278 6.21278 6.23164 6.25475 6.40395 6.45166 6.55689 6.71696 6.90925 7.04193 7.23586 7.24368 7.34713 7.41285 7.45365 7.83417 7.99844 9.00485 9.70968 10.72830 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.002875 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.970911 B = 9737.935609 C =10159.125232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.056 4.056 4 C -0.134 4.134 5 C -0.110 4.110 6 C -0.119 4.119 7 C 0.053 3.947 8 N -0.529 5.529 9 C 0.114 3.886 10 C -0.184 4.184 11 C -0.053 4.053 12 C -0.195 4.195 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.065 4.065 25 C 0.066 3.934 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.027 0.973 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.807 -18.603 -1.775 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.057 4.057 4 C -0.191 4.191 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.074 4.074 8 N -0.253 5.253 9 C -0.013 4.013 10 C -0.185 4.185 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.084 4.084 25 C -0.062 4.062 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.119 0.881 47 H 0.045 0.955 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.886 -17.911 -2.338 21.623 hybrid contribution 0.575 -0.242 1.725 1.835 sum -11.312 -18.153 -0.612 21.397 Atomic orbital electron populations 1.21859 0.95894 1.01180 1.02167 1.21541 0.96005 0.95946 1.01613 1.20568 0.94297 0.94594 0.96217 1.21832 0.99621 1.01815 0.95869 1.21689 1.00105 0.96066 0.96886 1.21652 0.95404 0.96577 1.02074 1.22187 0.94962 1.00415 0.89884 1.62022 1.10984 1.14013 1.38267 1.20800 0.86224 0.93860 1.00411 1.19086 1.09949 0.95699 0.93766 1.20462 0.96865 0.92098 0.97715 1.20220 1.09059 0.97083 0.95042 1.19402 0.91107 0.85999 0.93281 1.83981 1.71531 1.23534 1.29066 1.21311 1.48667 0.95753 0.81044 0.89128 1.25283 0.96696 0.94527 1.00009 1.70041 1.43933 1.03241 1.32531 0.85724 0.78946 0.78326 0.80504 1.19897 1.20237 1.19215 1.21114 1.10053 0.94267 0.99925 1.20599 0.97243 0.95254 0.95277 1.22102 0.94409 0.89560 1.00134 0.92532 0.92319 0.93218 0.92083 0.92394 0.93336 0.90906 0.93367 0.91861 0.92679 0.91945 0.90892 0.95738 0.89133 0.95282 0.90875 0.86995 0.86590 0.92024 0.85689 0.88069 0.95488 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.21 37.16 0.34 -0.78 16 2 C -0.11 -0.92 4.99 -26.73 -0.13 -1.05 16 3 C -0.06 -0.54 0.54 -154.43 -0.08 -0.62 16 4 C -0.13 -1.33 7.69 37.16 0.29 -1.04 16 5 C -0.11 -1.09 4.36 -26.61 -0.12 -1.21 16 6 C -0.12 -1.39 5.74 -26.65 -0.15 -1.55 16 7 C 0.05 0.72 4.57 -3.83 -0.02 0.70 16 8 N -0.53 -6.86 4.08 -236.11 -0.96 -7.83 16 9 C 0.11 1.57 5.43 -4.98 -0.03 1.54 16 10 C -0.18 -3.10 4.13 -104.58 -0.43 -3.53 16 11 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 12 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 13 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 14 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 15 C -0.39 -10.94 9.49 30.88 0.29 -10.64 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 19 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 24 C -0.06 -1.17 7.78 -39.61 -0.31 -1.48 16 25 C 0.07 0.72 4.14 -3.84 -0.02 0.71 16 26 H 0.06 0.42 6.49 -51.93 -0.34 0.08 16 27 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.85 6.01 -51.93 -0.31 0.54 16 33 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 34 H 0.06 0.58 6.58 -51.93 -0.34 0.23 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.89 6.58 -51.93 -0.34 0.55 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 1.47 5.64 -51.93 -0.29 1.17 16 40 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 41 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 46 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -29.15 364.31 -9.51 -38.66 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.91 Total: 3.55 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -1.86 Total: -25.72 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.21 Total: -32.40 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.15 -9.51 -38.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743860716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.042 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds