Wall clock time and date at job start Tue Mar 31 2020 08:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47236 * 2 1 4 4 C 1.53000 * 109.50391 * 300.00457 * 3 2 1 5 5 C 1.53119 * 109.53029 * 60.10079 * 3 2 1 6 6 C 1.53119 * 109.15757 * 177.61866 * 5 3 2 7 7 C 1.53039 * 109.27670 * 302.34153 * 6 5 3 8 8 N 1.46843 * 109.52235 * 59.18424 * 7 6 5 9 9 C 1.46900 * 111.00073 * 174.16143 * 8 7 6 10 10 C 1.50700 * 109.47016 * 314.20569 * 9 8 7 11 11 C 1.38303 * 119.93120 * 269.72922 * 10 9 8 12 12 C 1.38100 * 120.06682 * 179.72648 * 11 10 9 13 13 C 1.38878 * 119.93120 * 0.56805 * 12 11 10 14 14 O 1.35751 * 120.07002 * 179.68090 * 13 12 11 15 15 C 1.34830 * 117.00102 * 174.48379 * 14 13 12 16 16 H 1.08000 * 119.99787 * 5.06561 * 15 14 13 17 17 C 1.38647 * 120.00434 * 185.05772 * 15 14 13 18 18 N 1.31560 * 119.99684 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00631 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47221 * 90.00067 * 19 17 15 21 21 H 1.48498 * 109.47384 * 210.00590 * 19 17 15 22 22 H 1.48504 * 109.46641 * 330.00422 * 19 17 15 23 23 C 1.38885 * 119.86192 * 359.70240 * 13 12 11 24 24 C 1.38101 * 119.92691 * 0.02562 * 23 13 12 25 25 C 1.46851 * 111.19622 * 298.25780 * 8 7 6 26 26 H 1.08999 * 109.47191 * 299.99414 * 1 2 3 27 27 H 1.09001 * 109.47655 * 59.99886 * 1 2 3 28 28 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46922 * 240.00107 * 2 1 3 30 30 H 1.08997 * 109.47002 * 120.00432 * 2 1 3 31 31 H 1.09000 * 109.47119 * 299.91688 * 4 3 2 32 32 H 1.09003 * 109.46924 * 179.91805 * 4 3 2 33 33 H 1.09003 * 109.47353 * 59.91715 * 4 3 2 34 34 H 1.08998 * 109.52556 * 297.51568 * 5 3 2 35 35 H 1.08996 * 109.53053 * 57.70857 * 5 3 2 36 36 H 1.09009 * 109.50644 * 182.40315 * 6 5 3 37 37 H 1.09002 * 109.53991 * 62.30380 * 6 5 3 38 38 H 1.08999 * 109.46424 * 299.16749 * 7 6 5 39 39 H 1.09005 * 109.45188 * 179.19260 * 7 6 5 40 40 H 1.09002 * 109.47310 * 74.20916 * 9 8 7 41 41 H 1.09001 * 109.46809 * 194.20572 * 9 8 7 42 42 H 1.07994 * 119.96639 * 359.97438 * 11 10 9 43 43 H 1.08000 * 120.03146 * 180.27217 * 12 11 10 44 44 H 0.97006 * 120.00166 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.03501 * 180.02562 * 23 13 12 46 46 H 1.08007 * 119.96099 * 179.97438 * 24 23 13 47 47 H 1.09006 * 109.45781 * 301.72627 * 25 8 7 48 48 H 1.09003 * 109.46301 * 181.76305 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5303 2.1645 -1.2489 5 6 1.5324 2.1649 1.2510 6 6 2.0961 3.5884 1.2727 7 6 3.6248 3.5271 1.2378 8 7 4.0603 2.8276 0.0223 9 6 5.5222 2.8706 -0.1147 10 6 6.0110 4.2705 0.1546 11 6 6.1233 5.1744 -0.8862 12 6 6.5655 6.4596 -0.6417 13 6 6.9088 6.8405 0.6490 14 8 7.3500 8.1012 0.8914 15 6 7.5569 8.4401 2.1799 16 1 7.4509 7.6979 2.9572 17 6 7.9059 9.7415 2.5071 18 7 8.0348 10.6457 1.5603 19 14 8.1933 10.2109 4.2922 20 1 9.6237 10.0051 4.6341 21 1 7.8370 11.6386 4.4921 22 1 7.3476 9.3621 5.1694 23 6 6.8003 5.9288 1.6910 24 6 6.3521 4.6467 1.4409 25 6 3.5703 1.4434 0.0020 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8948 1.6519 -2.1391 32 1 1.8928 3.1925 -1.2476 33 1 0.4403 2.1636 -1.2498 34 1 0.4434 2.2047 1.2320 35 1 1.8628 1.6287 2.1406 36 1 1.7729 4.0940 2.1827 37 1 1.7339 4.1372 0.4033 38 1 3.9869 2.9908 2.1149 39 1 4.0289 4.5395 1.2387 40 1 5.9746 2.1838 0.6007 41 1 5.8010 2.5768 -1.1267 42 1 5.8611 4.8760 -1.8904 43 1 6.6488 7.1663 -1.4541 44 1 8.2793 11.5561 1.7891 45 1 7.0661 6.2222 2.6959 46 1 6.2678 3.9371 2.2508 47 1 3.9327 0.9169 0.8850 48 1 3.9350 0.9422 -0.8947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743860716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:48 Heat of formation + Delta-G solvation = -32.139083 kcal Electronic energy + Delta-G solvation = -25091.356351 eV Core-core repulsion = 21724.413689 eV Total energy + Delta-G solvation = -3366.942662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16311 -40.45105 -38.53871 -36.31145 -34.31277 -33.41054 -31.85107 -31.36773 -30.28478 -27.82256 -27.59989 -26.69299 -24.70745 -23.84297 -23.55132 -22.33807 -21.23284 -19.82705 -19.10169 -18.79085 -17.03339 -16.56007 -16.45351 -16.22290 -15.78474 -15.66898 -15.46196 -15.28414 -15.06353 -15.00612 -14.58077 -14.40855 -14.30860 -13.92957 -13.61661 -13.34872 -13.06898 -12.96018 -12.74789 -12.73662 -12.59643 -12.51277 -12.28129 -12.14323 -12.06682 -11.99330 -11.93668 -11.51719 -11.23670 -11.16717 -10.95407 -10.91434 -10.78120 -9.75803 -9.20596 -8.82984 -8.47454 -6.15550 0.59790 0.67085 1.34078 1.43275 1.51613 2.17111 2.74652 3.04406 3.31224 3.52650 3.75522 3.87066 3.95519 4.03094 4.06693 4.18876 4.24192 4.38783 4.43659 4.46275 4.49063 4.60109 4.68459 4.72765 4.73816 4.75737 4.79334 4.85841 4.91817 4.98992 5.04776 5.09340 5.09569 5.15034 5.21448 5.23326 5.28775 5.30106 5.34671 5.37938 5.41709 5.57584 5.60854 5.71009 5.75557 5.81509 6.02631 6.18432 6.21906 6.32971 6.97254 7.78503 8.75823 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.002875 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.970911 B = 9737.935609 C =10159.125232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.054 4.054 4 C -0.130 4.130 5 C -0.105 4.105 6 C -0.118 4.118 7 C 0.056 3.944 8 N -0.533 5.533 9 C 0.115 3.885 10 C -0.155 4.155 11 C -0.047 4.047 12 C -0.205 4.205 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.241 4.241 24 C -0.060 4.060 25 C 0.066 3.934 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.129 0.871 47 H 0.030 0.970 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 -22.190 -1.272 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.054 4.054 4 C -0.188 4.188 5 C -0.143 4.143 6 C -0.155 4.155 7 C -0.072 4.072 8 N -0.257 5.257 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.065 4.065 12 C -0.224 4.224 13 C 0.065 3.935 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.177 1.177 23 C -0.260 4.260 24 C -0.078 4.078 25 C -0.062 4.062 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.163 0.837 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.147 0.853 47 H 0.048 0.952 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.299 -21.565 -1.852 25.403 hybrid contribution 0.863 0.547 1.407 1.738 sum -12.436 -21.017 -0.445 24.425 Atomic orbital electron populations 1.21852 0.95311 1.01775 1.02093 1.21501 0.96461 0.94645 1.02059 1.20562 0.93464 0.95608 0.95754 1.21782 1.00175 1.00585 0.96221 1.21661 1.00684 0.94682 0.97253 1.21623 0.94178 0.97944 1.01801 1.22092 0.96147 0.98678 0.90296 1.62019 1.10145 1.15642 1.37925 1.20852 0.86980 0.91378 1.01975 1.19548 1.06225 0.97095 0.92758 1.20822 0.95384 0.90642 0.99693 1.20455 1.09325 0.98629 0.94004 1.19923 0.92926 0.85493 0.95163 1.83944 1.74586 1.25919 1.29471 1.21795 1.49002 0.96572 0.81514 0.88234 1.26583 0.96167 0.94078 1.05232 1.70188 1.46618 1.03815 1.35293 0.84599 0.79367 0.78185 0.74134 1.18772 1.19545 1.17716 1.21183 1.10490 0.95389 0.98985 1.20869 0.95935 0.94170 0.96845 1.22189 0.95210 0.87996 1.00772 0.92625 0.92366 0.92363 0.91502 0.92107 0.92953 0.92934 0.92546 0.90831 0.92419 0.91798 0.91748 0.95556 0.92248 0.93960 0.89003 0.83741 0.87032 0.91844 0.86575 0.85302 0.95186 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.21 71.98 0.66 -1.09 16 2 C -0.11 -1.38 4.99 30.59 0.15 -1.23 16 3 C -0.05 -0.85 0.54 -52.13 -0.03 -0.88 16 4 C -0.13 -2.23 7.69 71.98 0.55 -1.68 16 5 C -0.11 -1.80 4.36 30.67 0.13 -1.67 16 6 C -0.12 -2.54 5.74 30.65 0.18 -2.37 16 7 C 0.06 1.40 4.57 86.33 0.39 1.79 16 8 N -0.53 -12.18 4.08 -900.92 -3.68 -15.86 16 9 C 0.11 2.73 5.43 85.56 0.46 3.20 16 10 C -0.16 -4.86 4.13 -19.84 -0.08 -4.95 16 11 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 12 C -0.20 -8.87 9.99 22.39 0.22 -8.65 16 13 C 0.12 5.82 6.65 22.58 0.15 5.97 16 14 O -0.23 -14.20 9.76 -22.74 -0.22 -14.42 16 15 C -0.41 -24.31 9.49 67.92 0.64 -23.67 16 16 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 17 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 18 N -0.92 -57.10 13.67 21.61 0.30 -56.80 16 19 Si 1.02 43.24 29.55 68.60 2.03 45.27 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 24 C -0.06 -2.07 7.78 22.25 0.17 -1.90 16 25 C 0.07 1.19 4.14 86.32 0.36 1.55 16 26 H 0.05 0.65 6.49 -2.39 -0.02 0.63 16 27 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.12 6.01 -2.39 -0.01 1.11 16 33 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 34 H 0.07 1.13 6.58 -2.39 -0.02 1.11 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.06 1.50 6.58 -2.39 -0.02 1.49 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 1.86 5.64 -2.38 -0.01 1.84 16 40 H 0.04 0.94 8.02 -2.39 -0.02 0.92 16 41 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 45 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 46 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 47 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 Total: -1.00 -67.79 364.31 4.21 -63.58 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.93 Total: 26.45 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 4.86 Total: -48.22 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -3.38 Total: -72.66 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.22 Total: -14.42 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.79 4.21 -63.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743860716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.440 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds