Wall clock time and date at job start Tue Mar 31 2020 08:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47110 * 2 1 4 4 C 1.53004 * 109.50477 * 60.00131 * 3 2 1 5 5 C 1.53118 * 109.50795 * 299.92311 * 3 2 1 6 6 C 1.53110 * 109.16363 * 182.40659 * 5 3 2 7 7 C 1.53036 * 109.28334 * 57.65218 * 6 5 3 8 8 N 1.46848 * 109.52357 * 300.82212 * 7 6 5 9 9 C 1.46896 * 110.99975 * 185.83463 * 8 7 6 10 10 C 1.50700 * 109.47003 * 66.04683 * 9 8 7 11 11 C 1.38301 * 119.93081 * 269.72550 * 10 9 8 12 12 C 1.38099 * 120.06771 * 179.72597 * 11 10 9 13 13 C 1.38885 * 119.92930 * 0.54876 * 12 11 10 14 14 O 1.35751 * 120.07222 * 179.74886 * 13 12 11 15 15 C 1.34821 * 117.00439 * 174.43946 * 14 13 12 16 16 H 1.07998 * 119.99736 * 5.05229 * 15 14 13 17 17 C 1.38650 * 120.00110 * 185.05867 * 15 14 13 18 18 N 1.31559 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47028 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47093 * 119.99856 * 19 17 15 22 22 H 1.48502 * 109.46802 * 239.99354 * 19 17 15 23 23 C 1.38879 * 119.86430 * 359.72321 * 13 12 11 24 24 C 1.38101 * 119.93062 * 0.02562 * 23 13 12 25 25 C 1.46846 * 111.22929 * 61.71812 * 8 7 6 26 26 H 1.09001 * 109.47003 * 299.99832 * 1 2 3 27 27 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47231 * 60.00074 * 1 2 3 29 29 H 1.08997 * 109.47475 * 120.00385 * 2 1 3 30 30 H 1.09001 * 109.47003 * 240.00168 * 2 1 3 31 31 H 1.08998 * 109.46716 * 60.00011 * 4 3 2 32 32 H 1.08999 * 109.47050 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47103 * 300.00302 * 4 3 2 34 34 H 1.09004 * 109.52063 * 302.31127 * 5 3 2 35 35 H 1.09005 * 109.52032 * 62.49658 * 5 3 2 36 36 H 1.09001 * 109.50886 * 177.59703 * 6 5 3 37 37 H 1.09002 * 109.50211 * 297.67242 * 6 5 3 38 38 H 1.09007 * 109.46065 * 60.83384 * 7 6 5 39 39 H 1.09001 * 109.46501 * 180.80404 * 7 6 5 40 40 H 1.09004 * 109.47175 * 186.04774 * 9 8 7 41 41 H 1.08995 * 109.47336 * 306.04564 * 9 8 7 42 42 H 1.07993 * 119.96422 * 0.02562 * 11 10 9 43 43 H 1.07999 * 120.03885 * 180.27049 * 12 11 10 44 44 H 0.97000 * 119.99621 * 179.97438 * 18 17 15 45 45 H 1.07998 * 120.03671 * 179.97438 * 23 13 12 46 46 H 1.07994 * 119.97075 * 180.02562 * 24 23 13 47 47 H 1.09001 * 109.49618 * 178.28259 * 25 8 7 48 48 H 1.09001 * 109.42935 * 58.31948 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.5304 2.1644 1.2490 5 6 1.5316 2.1645 -1.2509 6 6 2.0953 3.5879 -1.2736 7 6 3.6240 3.5266 -1.2396 8 7 4.0603 2.8275 -0.0242 9 6 5.5223 2.8706 0.1118 10 6 5.9640 4.2935 0.3385 11 6 6.2773 5.0991 -0.7411 12 6 6.6769 6.4051 -0.5369 13 6 6.7750 6.9059 0.7548 14 8 7.1724 8.1877 0.9591 15 6 7.1358 8.6453 2.2268 16 1 6.8794 7.9765 3.0351 17 6 7.4271 9.9746 2.4927 18 7 7.7398 10.7891 1.5081 19 14 7.3770 10.6084 4.2492 20 1 7.0018 9.5010 5.1645 21 1 8.7154 11.1303 4.6255 22 1 6.3735 11.6981 4.3537 23 6 6.4652 6.0926 1.8372 24 6 6.0612 4.7890 1.6262 25 6 3.5703 1.4434 -0.0020 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8937 1.6509 2.1391 32 1 1.8944 3.1918 1.2487 33 1 0.4404 2.1647 1.2493 34 1 1.8614 1.6279 -2.1405 35 1 0.4424 2.2042 -1.2312 36 1 1.7715 4.0932 -2.1835 37 1 1.7331 4.1366 -0.4042 38 1 3.9856 2.9899 -2.1168 39 1 4.0282 4.5389 -1.2413 40 1 5.8267 2.2562 0.9593 41 1 5.9834 2.4877 -0.7986 42 1 6.2046 4.7079 -1.7450 43 1 6.9172 7.0352 -1.3805 44 1 7.9432 11.7191 1.6941 45 1 6.5409 6.4790 2.8428 46 1 5.8197 4.1562 2.4673 47 1 3.9350 0.9427 0.8950 48 1 3.9327 0.9163 -0.8846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743860717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:52 Heat of formation + Delta-G solvation = -17.994743 kcal Electronic energy + Delta-G solvation = -25012.871399 eV Core-core repulsion = 21646.542082 eV Total energy + Delta-G solvation = -3366.329317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98862 -38.91356 -36.91395 -35.23091 -32.62149 -32.16676 -30.29779 -30.14915 -29.24413 -26.95755 -26.05043 -25.03212 -23.86405 -22.85124 -21.94193 -21.03318 -20.04896 -18.31911 -17.92256 -16.90851 -16.04503 -15.31135 -15.02083 -14.92746 -14.52344 -14.33900 -14.27641 -14.15732 -13.69940 -13.53767 -13.51682 -13.26872 -12.67643 -12.61764 -12.41466 -12.23792 -12.04521 -11.82170 -11.65384 -11.38477 -11.36646 -11.35145 -11.14576 -10.82502 -10.76468 -10.69382 -10.54586 -10.44663 -10.39912 -10.13378 -10.05047 -9.29301 -8.81269 -8.16253 -8.08477 -7.13400 -6.43064 -4.01566 2.24930 2.33011 3.13463 3.15379 3.20881 3.98201 4.02566 4.53509 4.64726 4.69162 4.74513 5.00815 5.10135 5.12869 5.17515 5.25871 5.29474 5.35341 5.41852 5.46433 5.52616 5.54286 5.61328 5.67812 5.73244 5.76894 5.78592 5.84217 5.88888 5.91501 5.92217 5.98502 6.02279 6.12981 6.16962 6.22631 6.25062 6.35566 6.46836 6.56538 6.73629 6.94522 7.08505 7.19043 7.25542 7.35077 7.46007 7.48624 7.86723 8.02575 9.03043 9.73804 10.75206 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.002853 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.048128 B = 9812.874512 C =10165.868032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.057 4.057 4 C -0.135 4.135 5 C -0.109 4.109 6 C -0.119 4.119 7 C 0.053 3.947 8 N -0.528 5.528 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.069 4.069 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.235 4.235 24 C -0.049 4.049 25 C 0.066 3.934 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -19.105 -3.384 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.057 4.057 4 C -0.192 4.192 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.074 4.074 8 N -0.252 5.252 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.088 4.088 12 C -0.213 4.213 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.254 4.254 24 C -0.068 4.068 25 C -0.062 4.062 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.404 -18.438 -3.159 21.909 hybrid contribution 0.364 -0.112 0.191 0.426 sum -11.040 -18.550 -2.968 21.790 Atomic orbital electron populations 1.21859 0.95891 1.01184 1.02173 1.21540 0.96011 0.95935 1.01611 1.20573 0.94299 0.94605 0.96218 1.21836 0.99610 1.01894 0.95866 1.21684 1.00151 0.95972 0.96895 1.21635 0.95200 0.96709 1.02132 1.22143 0.95339 1.00093 0.89850 1.61909 1.11141 1.14069 1.38122 1.20768 0.86260 0.94525 0.99706 1.19062 1.09749 0.95529 0.93410 1.20470 0.98218 0.92946 0.97155 1.20162 1.10161 0.96189 0.94776 1.19387 0.91366 0.85894 0.93212 1.83973 1.72149 1.21485 1.30688 1.21371 1.48875 0.94649 0.81724 0.89029 1.25285 0.96569 0.94849 0.99867 1.70051 1.43083 1.05334 1.31428 0.85655 0.78254 0.79142 0.80431 1.19082 1.20183 1.20159 1.21156 1.09988 0.94884 0.99359 1.20547 0.96262 0.94443 0.95575 1.22102 0.94423 0.89501 1.00132 0.92300 0.93214 0.92545 0.92062 0.92411 0.93301 0.90843 0.93364 0.92691 0.91818 0.91957 0.90758 0.95733 0.89593 0.91028 0.95211 0.87606 0.86711 0.92121 0.85673 0.87595 0.91130 0.95552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.21 37.16 0.34 -0.78 16 2 C -0.11 -0.91 4.99 -26.74 -0.13 -1.04 16 3 C -0.06 -0.54 0.54 -154.43 -0.08 -0.62 16 4 C -0.13 -1.39 7.68 37.16 0.29 -1.10 16 5 C -0.11 -1.04 4.36 -26.61 -0.12 -1.16 16 6 C -0.12 -1.32 5.74 -26.66 -0.15 -1.47 16 7 C 0.05 0.68 5.17 -3.83 -0.02 0.66 16 8 N -0.53 -6.81 3.93 -236.11 -0.93 -7.74 16 9 C 0.11 1.57 5.12 -4.98 -0.03 1.54 16 10 C -0.18 -3.00 4.89 -104.57 -0.51 -3.51 16 11 C -0.07 -1.23 7.88 -39.61 -0.31 -1.54 16 12 C -0.19 -4.10 9.99 -39.39 -0.39 -4.50 16 13 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 14 O -0.18 -5.16 9.76 0.07 0.00 -5.16 16 15 C -0.39 -10.98 9.49 30.88 0.29 -10.68 16 16 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 19 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 24 C -0.05 -0.92 9.69 -39.60 -0.38 -1.30 16 25 C 0.07 0.72 4.18 -3.83 -0.02 0.70 16 26 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 6.49 -51.93 -0.34 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 33 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 1.26 5.77 -51.93 -0.30 0.96 16 40 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 41 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 42 H 0.11 1.61 7.97 -52.49 -0.42 1.19 16 43 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 46 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 47 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -29.58 365.15 -9.53 -39.11 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.90 Total: 3.19 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -1.95 Total: -25.83 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.17 Total: -32.48 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.58 -9.53 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743860717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds