Wall clock time and date at job start Tue Mar 31 2020 08:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47110 * 2 1 4 4 C 1.53004 * 109.50477 * 60.00131 * 3 2 1 5 5 C 1.53118 * 109.50795 * 299.92311 * 3 2 1 6 6 C 1.53110 * 109.16363 * 182.40659 * 5 3 2 7 7 C 1.53036 * 109.28334 * 57.65218 * 6 5 3 8 8 N 1.46848 * 109.52357 * 300.82212 * 7 6 5 9 9 C 1.46896 * 110.99975 * 185.83463 * 8 7 6 10 10 C 1.50700 * 109.47003 * 66.04683 * 9 8 7 11 11 C 1.38301 * 119.93081 * 269.72550 * 10 9 8 12 12 C 1.38099 * 120.06771 * 179.72597 * 11 10 9 13 13 C 1.38885 * 119.92930 * 0.54876 * 12 11 10 14 14 O 1.35751 * 120.07222 * 179.74886 * 13 12 11 15 15 C 1.34821 * 117.00439 * 174.43946 * 14 13 12 16 16 H 1.07998 * 119.99736 * 5.05229 * 15 14 13 17 17 C 1.38650 * 120.00110 * 185.05867 * 15 14 13 18 18 N 1.31559 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47028 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47093 * 119.99856 * 19 17 15 22 22 H 1.48502 * 109.46802 * 239.99354 * 19 17 15 23 23 C 1.38879 * 119.86430 * 359.72321 * 13 12 11 24 24 C 1.38101 * 119.93062 * 0.02562 * 23 13 12 25 25 C 1.46846 * 111.22929 * 61.71812 * 8 7 6 26 26 H 1.09001 * 109.47003 * 299.99832 * 1 2 3 27 27 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47231 * 60.00074 * 1 2 3 29 29 H 1.08997 * 109.47475 * 120.00385 * 2 1 3 30 30 H 1.09001 * 109.47003 * 240.00168 * 2 1 3 31 31 H 1.08998 * 109.46716 * 60.00011 * 4 3 2 32 32 H 1.08999 * 109.47050 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47103 * 300.00302 * 4 3 2 34 34 H 1.09004 * 109.52063 * 302.31127 * 5 3 2 35 35 H 1.09005 * 109.52032 * 62.49658 * 5 3 2 36 36 H 1.09001 * 109.50886 * 177.59703 * 6 5 3 37 37 H 1.09002 * 109.50211 * 297.67242 * 6 5 3 38 38 H 1.09007 * 109.46065 * 60.83384 * 7 6 5 39 39 H 1.09001 * 109.46501 * 180.80404 * 7 6 5 40 40 H 1.09004 * 109.47175 * 186.04774 * 9 8 7 41 41 H 1.08995 * 109.47336 * 306.04564 * 9 8 7 42 42 H 1.07993 * 119.96422 * 0.02562 * 11 10 9 43 43 H 1.07999 * 120.03885 * 180.27049 * 12 11 10 44 44 H 0.97000 * 119.99621 * 179.97438 * 18 17 15 45 45 H 1.07998 * 120.03671 * 179.97438 * 23 13 12 46 46 H 1.07994 * 119.97075 * 180.02562 * 24 23 13 47 47 H 1.09001 * 109.49618 * 178.28259 * 25 8 7 48 48 H 1.09001 * 109.42935 * 58.31948 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.5304 2.1644 1.2490 5 6 1.5316 2.1645 -1.2509 6 6 2.0953 3.5879 -1.2736 7 6 3.6240 3.5266 -1.2396 8 7 4.0603 2.8275 -0.0242 9 6 5.5223 2.8706 0.1118 10 6 5.9640 4.2935 0.3385 11 6 6.2773 5.0991 -0.7411 12 6 6.6769 6.4051 -0.5369 13 6 6.7750 6.9059 0.7548 14 8 7.1724 8.1877 0.9591 15 6 7.1358 8.6453 2.2268 16 1 6.8794 7.9765 3.0351 17 6 7.4271 9.9746 2.4927 18 7 7.7398 10.7891 1.5081 19 14 7.3770 10.6084 4.2492 20 1 7.0018 9.5010 5.1645 21 1 8.7154 11.1303 4.6255 22 1 6.3735 11.6981 4.3537 23 6 6.4652 6.0926 1.8372 24 6 6.0612 4.7890 1.6262 25 6 3.5703 1.4434 -0.0020 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8937 1.6509 2.1391 32 1 1.8944 3.1918 1.2487 33 1 0.4404 2.1647 1.2493 34 1 1.8614 1.6279 -2.1405 35 1 0.4424 2.2042 -1.2312 36 1 1.7715 4.0932 -2.1835 37 1 1.7331 4.1366 -0.4042 38 1 3.9856 2.9899 -2.1168 39 1 4.0282 4.5389 -1.2413 40 1 5.8267 2.2562 0.9593 41 1 5.9834 2.4877 -0.7986 42 1 6.2046 4.7079 -1.7450 43 1 6.9172 7.0352 -1.3805 44 1 7.9432 11.7191 1.6941 45 1 6.5409 6.4790 2.8428 46 1 5.8197 4.1562 2.4673 47 1 3.9350 0.9427 0.8950 48 1 3.9327 0.9163 -0.8846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743860717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:51 Heat of formation + Delta-G solvation = -33.756255 kcal Electronic energy + Delta-G solvation = -25013.554870 eV Core-core repulsion = 21646.542082 eV Total energy + Delta-G solvation = -3367.012788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06739 -40.46294 -38.48747 -36.33017 -34.31336 -33.41236 -31.79419 -31.37749 -30.31862 -27.80145 -27.68757 -26.54106 -24.76620 -23.84446 -23.50899 -22.29878 -21.26829 -19.84458 -19.10126 -18.78000 -16.98646 -16.53291 -16.47077 -16.16485 -15.81513 -15.55186 -15.48902 -15.38153 -15.09198 -14.87519 -14.62735 -14.38615 -14.32743 -13.99444 -13.57515 -13.33690 -13.01680 -12.94441 -12.76765 -12.67997 -12.56893 -12.48766 -12.27681 -12.12097 -12.08805 -12.00684 -11.95405 -11.51491 -11.23372 -11.15005 -10.94977 -10.91871 -10.78102 -9.74104 -9.15421 -8.84749 -8.46812 -6.14606 0.61607 0.70080 1.34965 1.43188 1.53397 2.17969 2.75394 3.04937 3.33997 3.53281 3.76861 3.88927 3.95839 4.05178 4.08993 4.20664 4.26620 4.39005 4.45163 4.46331 4.49511 4.61220 4.68954 4.69951 4.72816 4.77219 4.79006 4.85641 4.92059 4.98665 5.04122 5.09841 5.10389 5.16766 5.21253 5.22280 5.28363 5.31812 5.34623 5.38918 5.41462 5.58370 5.61313 5.73447 5.75036 5.84250 6.04103 6.20101 6.26218 6.34492 6.98300 7.79791 8.76832 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.002853 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.048128 B = 9812.874512 C =10165.868032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.054 4.054 4 C -0.131 4.131 5 C -0.105 4.105 6 C -0.118 4.118 7 C 0.053 3.947 8 N -0.539 5.539 9 C 0.116 3.884 10 C -0.149 4.149 11 C -0.059 4.059 12 C -0.204 4.204 13 C 0.114 3.886 14 O -0.234 6.234 15 C -0.411 4.411 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.243 4.243 24 C -0.050 4.050 25 C 0.067 3.933 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.272 0.728 45 H 0.116 0.884 46 H 0.135 0.865 47 H 0.077 0.923 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -22.617 -3.038 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.054 4.054 4 C -0.188 4.188 5 C -0.142 4.142 6 C -0.155 4.155 7 C -0.074 4.074 8 N -0.263 5.263 9 C -0.011 4.011 10 C -0.150 4.150 11 C -0.077 4.077 12 C -0.224 4.224 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.487 4.487 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.262 4.262 24 C -0.068 4.068 25 C -0.060 4.060 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.157 0.843 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.153 0.847 47 H 0.095 0.905 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.854 -22.018 -2.828 25.652 hybrid contribution 0.692 0.648 -0.074 0.951 sum -12.162 -21.370 -2.902 24.759 Atomic orbital electron populations 1.21851 0.95362 1.01767 1.02063 1.21498 0.96420 0.94649 1.02076 1.20567 0.93574 0.95584 0.95704 1.21784 1.00129 1.00517 0.96402 1.21656 1.00635 0.94756 0.97180 1.21610 0.94234 0.97875 1.01826 1.22115 0.96293 0.98812 0.90221 1.61841 1.10293 1.15749 1.38425 1.20781 0.87182 0.91852 1.01275 1.19562 1.05924 0.97127 0.92416 1.20817 0.96338 0.91369 0.99210 1.20405 1.10506 0.97774 0.93679 1.19919 0.93306 0.85273 0.95163 1.83936 1.75211 1.23815 1.31096 1.21841 1.49254 0.95457 0.82185 0.88232 1.26585 0.95886 0.94695 1.04945 1.70193 1.45713 1.05879 1.34248 0.84534 0.78651 0.78709 0.74337 1.17507 1.19264 1.19349 1.21236 1.10401 0.96195 0.98347 1.20868 0.95252 0.93251 0.97433 1.22165 0.95100 0.87990 1.00769 0.92605 0.92351 0.92458 0.91736 0.91824 0.93263 0.93167 0.92587 0.92003 0.90963 0.91252 0.92272 0.94738 0.92013 0.89353 0.93656 0.84271 0.87119 0.91874 0.86621 0.84709 0.90505 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.21 71.98 0.66 -1.11 16 2 C -0.11 -1.37 4.99 30.59 0.15 -1.22 16 3 C -0.05 -0.86 0.54 -52.13 -0.03 -0.89 16 4 C -0.13 -2.40 7.68 71.98 0.55 -1.85 16 5 C -0.10 -1.69 4.36 30.67 0.13 -1.56 16 6 C -0.12 -2.38 5.74 30.64 0.18 -2.20 16 7 C 0.05 1.22 5.17 86.33 0.45 1.67 16 8 N -0.54 -12.18 3.93 -900.92 -3.54 -15.72 16 9 C 0.12 2.74 5.12 85.56 0.44 3.18 16 10 C -0.15 -4.71 4.89 -19.83 -0.10 -4.80 16 11 C -0.06 -2.00 7.88 22.25 0.18 -1.82 16 12 C -0.20 -8.87 9.99 22.39 0.22 -8.65 16 13 C 0.11 5.78 6.65 22.58 0.15 5.93 16 14 O -0.23 -14.36 9.76 -22.67 -0.22 -14.59 16 15 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 16 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 17 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 18 N -0.92 -57.41 13.67 21.61 0.30 -57.11 16 19 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 24 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 25 C 0.07 1.20 4.18 86.33 0.36 1.56 16 26 H 0.05 0.68 6.43 -2.39 -0.02 0.66 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.65 6.49 -2.39 -0.02 0.64 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.16 6.01 -2.39 -0.01 1.15 16 33 H 0.06 0.92 6.43 -2.39 -0.02 0.91 16 34 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 1.06 6.58 -2.38 -0.02 1.05 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.38 6.58 -2.39 -0.02 1.36 16 38 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.06 1.70 5.77 -2.39 -0.01 1.69 16 40 H 0.09 1.87 7.92 -2.38 -0.02 1.85 16 41 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 42 H 0.14 3.81 7.97 -2.91 -0.02 3.79 16 43 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 46 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 47 H 0.08 1.30 8.01 -2.39 -0.02 1.28 16 48 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -68.73 365.15 4.37 -64.36 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.93 Total: 26.05 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 4.88 Total: -48.61 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -3.25 Total: -72.83 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.73 4.37 -64.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743860717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.606 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds