Wall clock time and date at job start Tue Mar 31 2020 08:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47044 * 2 1 4 4 C 1.52994 * 109.47605 * 120.00198 * 2 1 3 5 5 C 1.53000 * 109.47312 * 64.99879 * 4 2 1 6 6 C 1.52994 * 109.47312 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47215 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47498 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47422 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99788 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00132 * 180.02562 * 9 8 7 12 12 C 1.39237 * 120.00231 * 185.18464 * 11 9 8 13 13 C 1.39486 * 119.82855 * 324.05356 * 12 11 9 14 14 C 1.36370 * 120.16515 * 180.29933 * 13 12 11 15 15 C 1.40876 * 119.82773 * 359.48291 * 14 13 12 16 16 C 1.41160 * 120.16091 * 180.25102 * 15 14 13 17 17 H 1.07993 * 119.99606 * 205.02487 * 16 15 14 18 18 C 1.39904 * 120.00083 * 25.02497 * 16 15 14 19 19 N 1.30878 * 119.99809 * 17.77995 * 18 16 15 20 20 Si 1.86795 * 120.00190 * 197.77450 * 18 16 15 21 21 H 1.48501 * 109.47012 * 94.98303 * 20 18 16 22 22 H 1.48500 * 109.47567 * 214.98476 * 20 18 16 23 23 H 1.48504 * 109.46924 * 334.98548 * 20 18 16 24 24 C 1.40865 * 119.67384 * 0.51475 * 15 14 13 25 25 C 1.36379 * 119.82607 * 359.73526 * 24 15 14 26 26 H 1.09005 * 109.47297 * 299.99860 * 1 2 3 27 27 H 1.09004 * 109.47742 * 59.99703 * 1 2 3 28 28 H 1.09001 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47355 * 240.00677 * 2 1 3 30 30 H 1.09000 * 109.47464 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47270 * 300.00178 * 3 2 1 32 32 H 1.09000 * 109.47200 * 60.00329 * 3 2 1 33 33 H 1.09004 * 109.47074 * 304.99588 * 4 2 1 34 34 H 1.09004 * 109.47573 * 184.99929 * 4 2 1 35 35 H 1.09004 * 109.47289 * 59.99840 * 5 4 2 36 36 H 1.09004 * 109.46843 * 300.00498 * 5 4 2 37 37 H 1.09008 * 109.47261 * 60.00440 * 6 5 4 38 38 H 1.08994 * 109.47648 * 300.00193 * 6 5 4 39 39 H 1.09010 * 109.46820 * 60.00448 * 7 6 5 40 40 H 1.08995 * 109.47781 * 300.00643 * 7 6 5 41 41 H 1.09004 * 109.46908 * 60.00014 * 8 7 6 42 42 H 1.09004 * 109.47079 * 300.00915 * 8 7 6 43 43 H 0.97007 * 119.99967 * 5.17437 * 11 9 8 44 44 H 1.07998 * 119.91418 * 0.02562 * 13 12 11 45 45 H 1.08005 * 120.08508 * 179.69974 * 14 13 12 46 46 H 0.97000 * 119.99698 * 179.97438 * 19 18 16 47 47 H 1.07998 * 120.08712 * 179.71205 * 24 15 14 48 48 H 1.07999 * 119.91122 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1460 -2.9168 2.4367 7 6 1.7407 -4.3910 2.3757 8 6 2.2519 -5.1126 3.6243 9 6 1.8533 -6.5646 3.5639 10 8 1.2220 -6.9812 2.6159 11 7 2.1974 -7.4000 4.5640 12 6 1.9244 -8.7613 4.4590 13 6 0.7552 -9.1879 3.8291 14 6 0.4780 -10.5193 3.7278 15 6 1.3813 -11.4649 4.2517 16 6 1.1040 -12.8450 4.1461 17 1 1.5338 -13.5378 4.8542 18 6 0.2723 -13.3152 3.1240 19 7 0.0332 -12.5656 2.0781 20 14 -0.4966 -15.0127 3.2520 21 1 -1.8613 -14.8959 3.8258 22 1 -0.5784 -15.6224 1.9004 23 1 0.3387 -15.8693 4.1318 24 6 2.5599 -11.0264 4.8864 25 6 2.8210 -9.6914 4.9846 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6055 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.7117 -2.4575 3.3248 38 1 3.2323 -2.8399 2.4822 39 1 2.1747 -4.8506 1.4877 40 1 0.6544 -4.4676 2.3305 41 1 1.8184 -4.6530 4.5126 42 1 3.3383 -5.0359 3.6691 43 1 2.6354 -7.0529 5.3569 44 1 0.0657 -8.4619 3.4245 45 1 -0.4300 -10.8481 3.2441 46 1 -0.5431 -12.8918 1.3693 47 1 3.2548 -11.7454 5.2945 48 1 3.7240 -9.3536 5.4713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747873142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:23 Heat of formation + Delta-G solvation = -78.814153 kcal Electronic energy + Delta-G solvation = -23300.964394 eV Core-core repulsion = 19931.997749 eV Total energy + Delta-G solvation = -3368.966645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17012 -39.13874 -38.19453 -36.26677 -35.63914 -34.71455 -32.20851 -31.39052 -30.76451 -28.08885 -27.96009 -26.50552 -24.03945 -23.18402 -22.51086 -21.77617 -20.97683 -20.65941 -19.25638 -18.36740 -17.65210 -17.12669 -16.93900 -16.28714 -15.79779 -15.54554 -15.40324 -15.05000 -14.94869 -14.52843 -14.46078 -14.12317 -13.94359 -13.69085 -13.45320 -13.28862 -13.02689 -12.93801 -12.84708 -12.78068 -12.60969 -12.36448 -12.32250 -12.06314 -11.90291 -11.73627 -11.69394 -11.50746 -11.43155 -11.25646 -11.21105 -11.15072 -10.70674 -10.39314 -9.46284 -8.88479 -8.62643 -6.28052 0.82558 1.13169 1.36978 1.45315 1.52190 1.85795 2.19901 2.44051 2.75583 3.71620 3.75147 3.87292 3.98293 4.08909 4.12508 4.19525 4.39786 4.42874 4.45731 4.50327 4.64212 4.75211 4.78050 4.80503 4.83315 4.93093 4.98328 5.01388 5.05112 5.08653 5.10855 5.11476 5.19185 5.21451 5.29707 5.31630 5.39537 5.40487 5.45175 5.49338 5.59273 5.60544 5.68131 5.88022 6.08809 6.11395 6.33946 6.67583 6.79439 6.91632 7.00923 7.50156 8.32640 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.002006 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.668507 B =13953.347732 C =14787.508779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.123 4.123 9 C 0.488 3.512 10 O -0.584 6.584 11 N -0.646 5.646 12 C 0.004 3.996 13 C -0.102 4.102 14 C -0.183 4.183 15 C 0.072 3.928 16 C -0.495 4.495 17 H 0.083 0.917 18 C 0.029 3.971 19 N -0.830 5.830 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.224 4.224 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.419 0.581 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.287 0.713 47 H 0.111 0.889 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 22.893 1.590 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.162 4.162 9 C 0.278 3.722 10 O -0.464 6.464 11 N -0.292 5.292 12 C -0.090 4.090 13 C -0.122 4.122 14 C -0.204 4.204 15 C 0.069 3.931 16 C -0.524 4.524 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.244 4.244 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.257 0.743 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.129 0.871 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.202 22.654 0.693 23.051 hybrid contribution -0.482 -0.948 -0.165 1.076 sum 3.720 21.706 0.528 22.029 Atomic orbital electron populations 1.21898 0.95453 1.01575 1.01799 1.21159 0.95881 0.96612 0.98399 1.21826 1.01063 0.95488 1.01899 1.21610 1.00988 0.94231 0.97789 1.21649 1.00877 0.95615 0.97943 1.21544 1.01722 0.92696 0.98642 1.21312 1.00528 0.95829 0.96464 1.21707 1.04662 0.87931 1.01939 1.21844 0.78887 0.90276 0.81207 1.90694 1.41150 1.78932 1.35648 1.42975 1.60239 1.05050 1.20925 1.17319 0.97060 0.83589 1.11013 1.20596 0.96380 0.95339 0.99900 1.20895 1.00641 0.92209 1.06615 1.18030 0.90740 0.94049 0.90255 1.19843 1.27106 0.93282 1.12220 0.89937 1.26893 0.94599 1.03973 0.93072 1.69956 1.29326 1.40078 1.06235 0.85128 0.79042 0.76333 0.78800 1.18837 1.19470 1.17547 1.20836 0.98257 0.95295 1.10031 1.20444 0.97755 0.92258 1.01453 0.92459 0.92720 0.93111 0.91971 0.92453 0.92667 0.92434 0.91528 0.91553 0.93004 0.92472 0.90576 0.90698 0.93595 0.93352 0.86024 0.86205 0.74339 0.88778 0.88782 0.90294 0.87132 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.95 71.98 0.64 -1.38 16 2 C -0.10 -1.34 2.92 -10.80 -0.03 -1.37 16 3 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 4 C -0.11 -1.40 4.68 30.59 0.14 -1.26 16 5 C -0.12 -1.98 4.97 30.59 0.15 -1.82 16 6 C -0.11 -1.65 5.21 30.59 0.16 -1.49 16 7 C -0.10 -2.31 4.50 30.59 0.14 -2.17 16 8 C -0.12 -2.50 5.70 29.85 0.17 -2.33 16 9 C 0.49 16.58 7.66 87.66 0.67 17.26 16 10 O -0.58 -26.79 13.42 -3.02 -0.04 -26.83 16 11 N -0.65 -21.49 5.30 -303.12 -1.61 -23.09 16 12 C 0.00 0.17 6.30 38.56 0.24 0.41 16 13 C -0.10 -5.39 8.62 22.13 0.19 -5.20 16 14 C -0.18 -10.57 8.63 22.48 0.19 -10.37 16 15 C 0.07 4.04 5.57 -21.27 -0.12 3.92 16 16 C -0.50 -27.47 9.03 23.39 0.21 -27.25 16 17 H 0.08 4.32 7.91 -2.91 -0.02 4.29 16 18 C 0.03 1.53 5.13 85.24 0.44 1.96 16 19 N -0.83 -46.55 10.98 21.82 0.24 -46.31 16 20 Si 0.99 39.58 29.59 68.60 2.03 41.61 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 24 C -0.22 -10.97 9.74 22.48 0.22 -10.75 16 25 C -0.10 -4.23 9.90 22.13 0.22 -4.01 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.76 6.56 -2.39 -0.02 0.75 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.00 6.56 -2.39 -0.02 0.99 16 37 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 1.23 8.10 -2.38 -0.02 1.22 16 40 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.42 9.68 8.82 -92.70 -0.82 8.86 16 44 H 0.09 5.11 6.24 -2.91 -0.02 5.09 16 45 H 0.09 5.74 6.19 -2.91 -0.02 5.73 16 46 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 47 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 48 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.43 386.08 5.03 -66.40 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.11 Total: 35.02 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 4.30 Total: -46.80 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.37 Total: -69.40 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.04 Total: -26.83 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -71.43 5.03 -66.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747873142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.412 kcal (2) G-P(sol) polarization free energy of solvation -71.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds