Wall clock time and date at job start Tue Mar 31 2020 08:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52998 * 109.47189 * 120.00354 * 2 1 3 5 5 C 1.53004 * 109.47293 * 174.99989 * 4 2 1 6 6 C 1.52995 * 109.47671 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46977 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47266 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99698 * 354.83556 * 9 8 7 11 11 N 1.34779 * 120.00551 * 174.84079 * 9 8 7 12 12 C 1.37145 * 119.99420 * 5.67082 * 11 9 8 13 13 H 1.07998 * 119.99633 * 55.67594 * 12 11 9 14 14 C 1.38885 * 120.00095 * 235.66821 * 12 11 9 15 15 N 1.31432 * 119.99822 * 9.25400 * 14 12 11 16 16 Si 1.86797 * 120.00347 * 189.25114 * 14 12 11 17 17 H 1.48497 * 109.46879 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47324 * 119.99950 * 16 14 12 19 19 H 1.48496 * 109.47473 * 240.00378 * 16 14 12 20 20 C 1.39785 * 120.00130 * 185.67673 * 11 9 8 21 21 C 1.38961 * 120.07283 * 175.18842 * 20 11 9 22 22 C 1.38081 * 119.91704 * 179.97438 * 21 20 11 23 23 C 1.38303 * 120.08186 * 359.97438 * 22 21 20 24 24 C 1.38313 * 120.15414 * 0.02562 * 23 22 21 25 25 C 1.38080 * 120.07962 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46994 * 299.99311 * 1 2 3 27 27 H 1.08994 * 109.46848 * 59.99734 * 1 2 3 28 28 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47341 * 240.00296 * 2 1 3 30 30 H 1.09001 * 109.47156 * 300.00511 * 3 2 1 31 31 H 1.09004 * 109.47086 * 59.99923 * 3 2 1 32 32 H 1.09001 * 109.47543 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47496 * 55.00257 * 4 2 1 34 34 H 1.09000 * 109.46944 * 294.99672 * 4 2 1 35 35 H 1.09005 * 109.47012 * 59.99467 * 5 4 2 36 36 H 1.09001 * 109.47031 * 300.00679 * 5 4 2 37 37 H 1.09003 * 109.46519 * 59.99766 * 6 5 4 38 38 H 1.08998 * 109.47263 * 300.00737 * 6 5 4 39 39 H 1.08998 * 109.47096 * 60.00649 * 7 6 5 40 40 H 1.09000 * 109.47046 * 300.00022 * 7 6 5 41 41 H 1.09000 * 109.47496 * 60.00294 * 8 7 6 42 42 H 1.09006 * 109.46959 * 300.00165 * 8 7 6 43 43 H 0.96994 * 119.99721 * 184.98388 * 15 14 12 44 44 H 1.07998 * 120.04322 * 359.69957 * 21 20 11 45 45 H 1.08007 * 119.96193 * 179.97438 * 22 21 20 46 46 H 1.08004 * 119.92595 * 179.97438 * 23 22 21 47 47 H 1.08004 * 119.95761 * 180.02562 * 24 23 22 48 48 H 1.08000 * 120.04146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0751 -1.5518 2.4373 7 6 5.5998 -1.6622 2.3757 8 6 6.1098 -2.3835 3.6249 9 6 7.6117 -2.4916 3.5645 10 8 8.2070 -2.1215 2.5748 11 7 8.2934 -2.9997 4.6103 12 6 7.6156 -3.5251 5.6805 13 1 6.8930 -4.3131 5.5279 14 6 7.8585 -3.0439 6.9605 15 7 8.5964 -1.9694 7.1296 16 14 7.1367 -3.9237 8.4418 17 1 6.3507 -5.0980 7.9854 18 1 8.2354 -4.3793 9.3309 19 1 6.2506 -2.9936 9.1867 20 6 9.6912 -2.9911 4.6041 21 6 10.3952 -3.4220 5.7220 22 6 11.7760 -3.4126 5.7122 23 6 12.4583 -2.9755 4.5914 24 6 11.7608 -2.5459 3.4770 25 6 10.3800 -2.5525 3.4797 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6055 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8533 -1.3939 0.3001 37 1 3.6404 -2.5504 2.4836 38 1 3.7867 -0.9887 3.3249 39 1 6.0347 -0.6638 2.3292 40 1 5.8877 -2.2257 1.4882 41 1 5.6749 -3.3819 3.6710 42 1 5.8218 -1.8203 4.5126 43 1 8.8262 -1.6749 8.0247 44 1 9.8631 -3.7597 6.5990 45 1 12.3239 -3.7471 6.5808 46 1 13.5383 -2.9688 4.5866 47 1 12.2968 -2.2056 2.6033 48 1 9.8360 -2.2165 2.6093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747877013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:35 Heat of formation + Delta-G solvation = -32.959220 kcal Electronic energy + Delta-G solvation = -24473.426264 eV Core-core repulsion = 21106.448038 eV Total energy + Delta-G solvation = -3366.978226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.68589 -37.55172 -37.12862 -35.03940 -34.50236 -31.94264 -30.98036 -29.58751 -28.78483 -27.34133 -26.40210 -25.14603 -22.93000 -21.56096 -21.03145 -20.55596 -19.93460 -19.22560 -17.62293 -16.11492 -15.88624 -15.53246 -15.17307 -14.99260 -14.53795 -14.31038 -14.20707 -13.74248 -13.46647 -13.07933 -13.00451 -12.81947 -12.48403 -12.34923 -12.17721 -11.99208 -11.88916 -11.54323 -11.47854 -11.43040 -11.27113 -11.12515 -10.94621 -10.82466 -10.77158 -10.59993 -10.45127 -10.42123 -10.20504 -10.12462 -10.00203 -9.21121 -8.73018 -8.07565 -7.76983 -6.86432 -6.29305 -4.53480 2.45556 2.59258 3.01934 3.12130 3.15300 3.78684 3.97133 4.46923 4.68641 4.75004 4.76861 4.81011 5.14228 5.16857 5.29651 5.34945 5.44766 5.52644 5.56614 5.66130 5.70669 5.77901 5.80201 5.89039 5.90828 5.93351 5.99464 6.05873 6.12401 6.15598 6.18475 6.23545 6.28187 6.35347 6.42939 6.47688 6.73290 6.74042 6.76567 6.83577 6.97270 7.18511 7.25800 7.54091 7.64950 7.72625 7.81752 8.08671 8.46732 8.86294 9.28917 9.66767 10.48330 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003153 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.550050 B = 8879.337465 C =10351.319793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.103 4.103 8 C -0.116 4.116 9 C 0.493 3.507 10 O -0.569 6.569 11 N -0.387 5.387 12 C -0.365 4.365 13 H 0.093 0.907 14 C 0.055 3.945 15 N -0.842 5.842 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.184 3.816 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.175 4.175 24 C -0.121 4.121 25 C -0.194 4.194 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 1.535 -6.928 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.141 4.141 8 C -0.156 4.156 9 C 0.286 3.714 10 O -0.454 6.454 11 N -0.094 5.094 12 C -0.493 4.493 13 H 0.111 0.889 14 C -0.154 4.154 15 N -0.474 5.474 16 Si 0.738 3.262 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.203 1.203 20 C 0.087 3.913 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.195 4.195 24 C -0.140 4.140 25 C -0.214 4.214 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.148 0.852 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.532 1.894 -7.238 12.118 hybrid contribution -0.103 -0.321 1.243 1.288 sum -9.636 1.573 -5.995 11.457 Atomic orbital electron populations 1.21848 0.95607 1.01522 1.01494 1.21140 0.95344 0.96506 0.98748 1.21899 1.01524 0.95924 1.01352 1.21673 0.95991 1.00199 0.97409 1.21650 0.94790 1.00920 0.98416 1.21609 0.95951 1.00362 0.97715 1.21357 0.93891 1.01108 0.97765 1.21351 0.92576 1.02168 0.99475 1.21039 0.90368 0.77013 0.83007 1.90156 1.69380 1.51938 1.33889 1.41055 1.02218 1.49393 1.16720 1.19351 1.25029 1.19877 0.85005 0.88946 1.25622 0.95839 0.94200 0.99778 1.70048 1.33972 1.19540 1.23831 0.86091 0.79340 0.79652 0.81115 1.18808 1.20126 1.20275 1.18321 0.84152 0.95326 0.93486 1.21031 0.92812 1.01003 0.97988 1.20763 0.94207 1.01848 0.97452 1.20778 0.98199 1.05479 0.95020 1.20868 0.94391 1.01240 0.97468 1.22815 0.94304 1.03176 1.01074 0.92798 0.93005 0.92836 0.91386 0.93154 0.92804 0.92179 0.92152 0.92075 0.91835 0.92182 0.92243 0.92111 0.91887 0.91804 0.89945 0.89016 0.91600 0.85151 0.87862 0.88248 0.87795 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.10 -0.87 2.92 -90.62 -0.26 -1.14 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.97 16 4 C -0.12 -1.12 4.68 -26.73 -0.13 -1.25 16 5 C -0.12 -1.35 4.97 -26.73 -0.13 -1.48 16 6 C -0.12 -1.53 5.21 -26.73 -0.14 -1.67 16 7 C -0.10 -1.67 4.52 -26.73 -0.12 -1.79 16 8 C -0.12 -2.19 4.52 -27.88 -0.13 -2.32 16 9 C 0.49 11.61 7.57 -10.99 -0.08 11.53 16 10 O -0.57 -14.02 12.37 5.56 0.07 -13.96 16 11 N -0.39 -9.75 2.62 -58.98 -0.15 -9.91 16 12 C -0.37 -8.94 7.61 -14.94 -0.11 -9.05 16 13 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 14 C 0.06 1.33 3.49 -17.48 -0.06 1.27 16 15 N -0.84 -21.83 11.39 55.49 0.63 -21.20 16 16 Si 0.91 18.50 29.57 -169.99 -5.03 13.48 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 20 C 0.18 4.71 6.05 -83.70 -0.51 4.20 16 21 C -0.11 -2.63 7.87 -39.37 -0.31 -2.94 16 22 C -0.12 -2.67 10.04 -39.61 -0.40 -3.06 16 23 C -0.18 -3.57 10.04 -39.53 -0.40 -3.97 16 24 C -0.12 -2.58 10.04 -39.61 -0.40 -2.97 16 25 C -0.19 -4.71 9.06 -39.37 -0.36 -5.07 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.73 6.57 -51.93 -0.34 0.38 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.78 8.04 -51.93 -0.42 1.37 16 43 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 44 H 0.13 3.28 5.15 -52.49 -0.27 3.01 16 45 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 46 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 47 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 48 H 0.18 4.35 4.50 -56.37 -0.25 4.10 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -27.49 379.07 -9.98 -37.46 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.35 Total: 9.89 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.86 Total: -21.48 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.48 Total: -31.11 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.96 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.49 -9.98 -37.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747877013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds