Wall clock time and date at job start Tue Mar 31 2020 08:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52998 * 109.47189 * 120.00354 * 2 1 3 5 5 C 1.53004 * 109.47293 * 174.99989 * 4 2 1 6 6 C 1.52995 * 109.47671 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46977 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47266 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99698 * 354.83556 * 9 8 7 11 11 N 1.34779 * 120.00551 * 174.84079 * 9 8 7 12 12 C 1.37145 * 119.99420 * 5.67082 * 11 9 8 13 13 H 1.07998 * 119.99633 * 55.67594 * 12 11 9 14 14 C 1.38885 * 120.00095 * 235.66821 * 12 11 9 15 15 N 1.31432 * 119.99822 * 9.25400 * 14 12 11 16 16 Si 1.86797 * 120.00347 * 189.25114 * 14 12 11 17 17 H 1.48497 * 109.46879 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47324 * 119.99950 * 16 14 12 19 19 H 1.48496 * 109.47473 * 240.00378 * 16 14 12 20 20 C 1.39785 * 120.00130 * 185.67673 * 11 9 8 21 21 C 1.38961 * 120.07283 * 175.18842 * 20 11 9 22 22 C 1.38081 * 119.91704 * 179.97438 * 21 20 11 23 23 C 1.38303 * 120.08186 * 359.97438 * 22 21 20 24 24 C 1.38313 * 120.15414 * 0.02562 * 23 22 21 25 25 C 1.38080 * 120.07962 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46994 * 299.99311 * 1 2 3 27 27 H 1.08994 * 109.46848 * 59.99734 * 1 2 3 28 28 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47341 * 240.00296 * 2 1 3 30 30 H 1.09001 * 109.47156 * 300.00511 * 3 2 1 31 31 H 1.09004 * 109.47086 * 59.99923 * 3 2 1 32 32 H 1.09001 * 109.47543 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47496 * 55.00257 * 4 2 1 34 34 H 1.09000 * 109.46944 * 294.99672 * 4 2 1 35 35 H 1.09005 * 109.47012 * 59.99467 * 5 4 2 36 36 H 1.09001 * 109.47031 * 300.00679 * 5 4 2 37 37 H 1.09003 * 109.46519 * 59.99766 * 6 5 4 38 38 H 1.08998 * 109.47263 * 300.00737 * 6 5 4 39 39 H 1.08998 * 109.47096 * 60.00649 * 7 6 5 40 40 H 1.09000 * 109.47046 * 300.00022 * 7 6 5 41 41 H 1.09000 * 109.47496 * 60.00294 * 8 7 6 42 42 H 1.09006 * 109.46959 * 300.00165 * 8 7 6 43 43 H 0.96994 * 119.99721 * 184.98388 * 15 14 12 44 44 H 1.07998 * 120.04322 * 359.69957 * 21 20 11 45 45 H 1.08007 * 119.96193 * 179.97438 * 22 21 20 46 46 H 1.08004 * 119.92595 * 179.97438 * 23 22 21 47 47 H 1.08004 * 119.95761 * 180.02562 * 24 23 22 48 48 H 1.08000 * 120.04146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0751 -1.5518 2.4373 7 6 5.5998 -1.6622 2.3757 8 6 6.1098 -2.3835 3.6249 9 6 7.6117 -2.4916 3.5645 10 8 8.2070 -2.1215 2.5748 11 7 8.2934 -2.9997 4.6103 12 6 7.6156 -3.5251 5.6805 13 1 6.8930 -4.3131 5.5279 14 6 7.8585 -3.0439 6.9605 15 7 8.5964 -1.9694 7.1296 16 14 7.1367 -3.9237 8.4418 17 1 6.3507 -5.0980 7.9854 18 1 8.2354 -4.3793 9.3309 19 1 6.2506 -2.9936 9.1867 20 6 9.6912 -2.9911 4.6041 21 6 10.3952 -3.4220 5.7220 22 6 11.7760 -3.4126 5.7122 23 6 12.4583 -2.9755 4.5914 24 6 11.7608 -2.5459 3.4770 25 6 10.3800 -2.5525 3.4797 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6055 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8533 -1.3939 0.3001 37 1 3.6404 -2.5504 2.4836 38 1 3.7867 -0.9887 3.3249 39 1 6.0347 -0.6638 2.3292 40 1 5.8877 -2.2257 1.4882 41 1 5.6749 -3.3819 3.6710 42 1 5.8218 -1.8203 4.5126 43 1 8.8262 -1.6749 8.0247 44 1 9.8631 -3.7597 6.5990 45 1 12.3239 -3.7471 6.5808 46 1 13.5383 -2.9688 4.5866 47 1 12.2968 -2.2056 2.6033 48 1 9.8360 -2.2165 2.6093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747877013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:34 Heat of formation + Delta-G solvation = -43.314371 kcal Electronic energy + Delta-G solvation = -24473.875297 eV Core-core repulsion = 21106.448038 eV Total energy + Delta-G solvation = -3367.427259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48555 -39.08073 -38.17073 -36.83175 -35.68376 -33.80996 -32.21781 -31.33734 -30.38762 -28.00167 -27.64775 -26.95396 -24.24400 -23.20035 -22.56610 -21.76027 -21.07368 -20.66199 -19.40583 -17.87692 -17.42776 -16.95713 -16.79116 -16.23219 -16.10020 -15.51508 -15.31823 -15.00190 -14.81456 -14.66948 -14.51658 -14.18882 -14.03093 -13.55068 -13.45584 -13.22903 -13.06059 -12.97140 -12.86415 -12.80452 -12.67385 -12.46507 -12.33128 -12.07632 -11.99330 -11.87176 -11.73931 -11.48765 -11.41850 -11.21708 -11.12939 -11.00896 -10.55190 -9.89208 -9.53941 -8.70801 -8.12682 -6.44242 0.69474 0.81053 1.40852 1.45571 1.58112 2.00982 2.25960 2.82673 2.93665 3.36178 3.79057 3.99332 4.02608 4.11406 4.16380 4.25858 4.31583 4.34171 4.44251 4.52774 4.59688 4.72867 4.76098 4.80698 4.83694 4.87324 4.94759 4.95873 4.99835 5.04502 5.05030 5.12696 5.14694 5.21088 5.21656 5.31980 5.38474 5.40487 5.42581 5.43849 5.50499 5.60554 5.61341 5.80099 5.89234 5.90930 6.06604 6.24752 6.63528 7.00410 7.45019 7.82840 8.65515 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003153 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.550050 B = 8879.337465 C =10351.319793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.106 4.106 9 C 0.475 3.525 10 O -0.589 6.589 11 N -0.401 5.401 12 C -0.378 4.378 13 H 0.099 0.901 14 C 0.021 3.979 15 N -0.879 5.879 16 Si 0.980 3.020 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.150 3.850 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.167 4.167 24 C -0.120 4.120 25 C -0.220 4.220 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.274 0.726 44 H 0.116 0.884 45 H 0.132 0.868 46 H 0.142 0.858 47 H 0.135 0.865 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 0.961 -6.670 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.131 4.131 8 C -0.146 4.146 9 C 0.269 3.731 10 O -0.475 6.475 11 N -0.109 5.109 12 C -0.504 4.504 13 H 0.117 0.883 14 C -0.185 4.185 15 N -0.512 5.512 16 Si 0.802 3.198 17 H -0.176 1.176 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.054 3.946 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.185 4.185 24 C -0.138 4.138 25 C -0.240 4.240 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.150 0.850 46 H 0.160 0.840 47 H 0.153 0.847 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.807 1.312 -6.992 12.115 hybrid contribution 0.100 -0.132 1.112 1.125 sum -9.707 1.179 -5.880 11.410 Atomic orbital electron populations 1.21828 0.94649 1.01904 1.01899 1.21139 0.96146 0.96307 0.98165 1.21902 1.00985 0.96083 1.01776 1.21631 0.94614 1.00669 0.97940 1.21605 0.95989 1.00364 0.97456 1.21546 0.93197 1.01352 0.98712 1.21284 0.96221 0.99539 0.96094 1.21359 0.89541 1.03220 1.00431 1.21864 0.92207 0.76548 0.82524 1.90134 1.70241 1.52691 1.34441 1.41341 1.02547 1.49737 1.17253 1.19652 1.25254 1.20130 0.85405 0.88309 1.26374 0.95667 0.94441 1.02045 1.70164 1.35527 1.21156 1.24328 0.85081 0.78509 0.78749 0.77438 1.17627 1.20074 1.20136 1.18718 0.84753 0.96660 0.94494 1.21072 0.94226 1.02335 0.97350 1.21153 0.93269 1.00886 0.99001 1.21215 1.00287 1.03319 0.93728 1.21248 0.93342 1.00174 0.99072 1.22850 0.95905 1.04607 1.00605 0.92721 0.92306 0.92479 0.91459 0.92331 0.92810 0.93026 0.91640 0.92101 0.92321 0.92173 0.91114 0.91925 0.93546 0.92390 0.88438 0.89703 0.91658 0.86567 0.84967 0.84006 0.84706 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.10 -1.62 2.92 -10.79 -0.03 -1.65 16 3 C -0.15 -2.47 8.95 71.98 0.64 -1.83 16 4 C -0.11 -2.01 4.68 30.59 0.14 -1.87 16 5 C -0.12 -2.53 4.97 30.59 0.15 -2.38 16 6 C -0.11 -2.76 5.21 30.59 0.16 -2.60 16 7 C -0.09 -3.06 4.52 30.59 0.14 -2.92 16 8 C -0.11 -4.09 4.52 29.85 0.14 -3.96 16 9 C 0.47 23.19 7.57 87.66 0.66 23.86 16 10 O -0.59 -30.31 12.37 -3.03 -0.04 -30.35 16 11 N -0.40 -20.90 2.62 -458.90 -1.20 -22.10 16 12 C -0.38 -18.81 7.61 84.02 0.64 -18.17 16 13 H 0.10 4.64 7.85 -2.91 -0.02 4.61 16 14 C 0.02 1.01 3.49 84.91 0.30 1.31 16 15 N -0.88 -46.47 11.39 21.65 0.25 -46.22 16 16 Si 0.98 37.85 29.57 68.60 2.03 39.88 16 17 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 18 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 20 C 0.15 7.90 6.05 38.22 0.23 8.13 16 21 C -0.13 -6.36 7.87 22.41 0.18 -6.18 16 22 C -0.12 -5.17 10.04 22.25 0.22 -4.94 16 23 C -0.17 -6.33 10.04 22.30 0.22 -6.11 16 24 C -0.12 -4.94 10.04 22.25 0.22 -4.72 16 25 C -0.22 -10.88 9.06 22.41 0.20 -10.67 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.92 6.57 -2.39 -0.02 0.91 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.33 6.57 -2.38 -0.02 1.31 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 41 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.08 3.38 8.04 -2.38 -0.02 3.36 16 43 H 0.27 13.65 8.32 -92.71 -0.77 12.88 16 44 H 0.12 5.96 5.15 -2.91 -0.02 5.95 16 45 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 47 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 48 H 0.16 8.33 4.50 -64.43 -0.29 8.04 16 Total: -1.00 -60.61 379.07 6.55 -54.06 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: 0.63 Total: 40.81 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.88 Total: -36.08 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.96 Total: -68.32 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.04 Total: -30.35 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -60.61 6.55 -54.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747877013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.745 kcal (2) G-P(sol) polarization free energy of solvation -60.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds