Wall clock time and date at job start Tue Mar 31 2020 08:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47077 * 2 1 4 4 C 1.50703 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.38367 * 119.85071 * 270.25204 * 4 3 2 6 6 C 1.37957 * 120.14103 * 180.25369 * 5 4 3 7 7 C 1.39574 * 119.85422 * 359.49439 * 6 5 4 8 8 C 1.47842 * 120.14698 * 180.27215 * 7 6 5 9 9 O 1.21554 * 119.99990 * 329.83159 * 8 7 6 10 10 N 1.34776 * 120.00378 * 149.82934 * 8 7 6 11 11 C 1.46496 * 119.99759 * 6.26389 * 10 8 7 12 12 C 1.50704 * 109.47040 * 98.53384 * 11 10 8 13 13 H 1.08005 * 119.99442 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00357 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99783 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47436 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46813 * 119.99871 * 16 14 12 19 19 H 1.48494 * 109.47334 * 239.99860 * 16 14 12 20 20 C 1.46502 * 120.00199 * 186.26938 * 10 8 7 21 21 C 1.52998 * 109.46842 * 84.19008 * 20 10 8 22 22 C 1.52997 * 109.47707 * 64.99936 * 21 20 10 23 23 C 1.53005 * 109.46982 * 184.99897 * 21 20 10 24 24 C 1.39581 * 119.71226 * 0.25398 * 7 6 5 25 25 C 1.37954 * 119.84846 * 359.97438 * 24 7 6 26 26 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47186 * 299.99938 * 1 2 3 28 28 H 1.09001 * 109.47058 * 59.99830 * 1 2 3 29 29 H 1.09000 * 109.47186 * 240.00062 * 2 1 3 30 30 H 1.08999 * 109.47160 * 119.99402 * 2 1 3 31 31 H 1.09000 * 109.47062 * 59.99986 * 3 2 1 32 32 H 1.09001 * 109.47315 * 300.00013 * 3 2 1 33 33 H 1.08001 * 119.92699 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.07319 * 179.77119 * 6 5 4 35 35 H 1.08999 * 109.47567 * 218.53308 * 11 10 8 36 36 H 1.09005 * 109.47783 * 338.53423 * 11 10 8 37 37 H 0.97000 * 120.00397 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.46927 * 204.18824 * 20 10 8 39 39 H 1.08997 * 109.47019 * 324.18575 * 20 10 8 40 40 H 1.09003 * 109.47277 * 304.99401 * 21 20 10 41 41 H 1.08999 * 109.47395 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47010 * 299.99796 * 22 21 20 43 43 H 1.09007 * 109.46966 * 59.99854 * 22 21 20 44 44 H 1.09010 * 109.46846 * 59.99669 * 23 21 20 45 45 H 1.09000 * 109.47639 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.46922 * 300.00099 * 23 21 20 47 47 H 1.07996 * 120.07301 * 180.02562 * 24 7 6 48 48 H 1.08003 * 119.92530 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2362 1.4371 1.1992 6 6 5.6158 1.4424 1.2056 7 6 6.3162 1.4425 -0.0017 8 6 7.7946 1.4421 -0.0023 9 8 8.4030 1.9707 0.9077 10 7 8.4680 0.8556 -1.0118 11 6 7.7414 0.3402 -2.1748 12 6 7.8072 1.3465 -3.2947 13 1 8.3368 2.2772 -3.1539 14 6 7.1903 1.0797 -4.4985 15 7 6.5449 -0.0533 -4.6697 16 14 7.2712 2.3274 -5.8863 17 1 8.0515 3.5107 -5.4433 18 1 7.9314 1.7132 -7.0662 19 1 5.8957 2.7500 -6.2529 20 6 9.9264 0.7335 -0.9461 21 6 10.2979 -0.5155 -0.1443 22 6 9.8207 -1.7622 -0.8918 23 6 11.8167 -0.5760 0.0307 24 6 5.6148 1.4427 -1.2085 25 6 4.2353 1.4422 -1.2008 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.6930 1.4324 2.1326 34 1 6.1526 1.4418 2.1427 35 1 8.1945 -0.5961 -2.5007 36 1 6.7001 0.1650 -1.9045 37 1 6.1106 -0.2410 -5.5165 38 1 10.3299 0.6508 -1.9553 39 1 10.3433 1.6152 -0.4594 40 1 9.8208 -0.4739 0.8348 41 1 10.0858 -2.6520 -0.3208 42 1 8.7387 -1.7191 -1.0165 43 1 10.2979 -1.8037 -1.8710 44 1 12.1568 0.3123 0.5633 45 1 12.0815 -1.4656 0.6023 46 1 12.2939 -0.6175 -0.9484 47 1 6.1509 1.4425 -2.1460 48 1 3.6913 1.4428 -2.1339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751374962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:05 Heat of formation + Delta-G solvation = -33.045414 kcal Electronic energy + Delta-G solvation = -25508.027641 eV Core-core repulsion = 22141.045677 eV Total energy + Delta-G solvation = -3366.981963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48236 -39.63818 -37.65305 -36.32256 -35.51447 -34.22252 -32.05649 -31.84328 -29.54369 -28.23264 -28.03134 -26.60439 -24.98747 -23.54391 -23.27330 -21.86545 -21.42622 -20.28870 -18.69741 -18.04282 -17.51867 -16.78511 -16.45271 -16.27009 -16.06621 -15.88370 -15.21734 -15.06198 -14.81870 -14.55066 -14.45872 -14.35003 -14.16254 -13.78683 -13.52981 -13.26440 -13.07205 -13.02003 -12.88789 -12.82283 -12.66484 -12.51038 -12.18759 -12.13942 -11.99569 -11.92609 -11.85715 -11.64509 -11.58581 -11.52104 -11.28035 -10.78088 -10.56012 -9.77462 -9.55515 -9.37072 -8.23666 -6.38981 0.04032 0.54564 1.38271 1.42840 1.52474 1.88884 2.27198 2.42345 2.92527 3.05034 3.67284 3.86736 3.96941 3.99846 4.02703 4.16632 4.17052 4.25995 4.30701 4.53980 4.58800 4.60766 4.61337 4.65620 4.76952 4.86650 4.87903 4.91159 4.95204 4.99958 5.02962 5.05409 5.07228 5.16465 5.23031 5.27523 5.28539 5.32110 5.39256 5.43538 5.49828 5.53091 5.60701 5.65314 5.76795 5.84863 6.00636 6.12266 6.53554 6.77870 7.23956 7.35768 8.80063 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.005452 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.975042 B = 5134.613632 C = 7008.512595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.077 4.077 4 C -0.056 4.056 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.165 4.165 8 C 0.549 3.451 9 O -0.596 6.596 10 N -0.587 5.587 11 C 0.221 3.779 12 C -0.550 4.550 13 H 0.049 0.951 14 C 0.035 3.965 15 N -0.904 5.904 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.276 1.276 19 H -0.274 1.274 20 C 0.121 3.879 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.111 4.111 25 C -0.142 4.142 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.271 0.729 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.173 0.827 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -1.854 7.856 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.114 4.114 4 C -0.057 4.057 5 C -0.151 4.151 6 C -0.092 4.092 7 C -0.168 4.168 8 C 0.339 3.661 9 O -0.481 6.481 10 N -0.315 5.315 11 C 0.101 3.899 12 C -0.588 4.588 13 H 0.067 0.933 14 C -0.168 4.168 15 N -0.541 5.541 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.201 1.201 19 H -0.199 1.199 20 C -0.001 4.001 21 C -0.123 4.123 22 C -0.196 4.196 23 C -0.192 4.192 24 C -0.128 4.128 25 C -0.160 4.160 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.190 0.810 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.899 -1.723 8.140 10.200 hybrid contribution 0.354 0.554 -1.161 1.334 sum -5.546 -1.169 6.979 8.991 Atomic orbital electron populations 1.21754 0.94181 1.02154 1.02402 1.21494 0.96830 0.95394 1.01931 1.20724 0.88461 0.98151 1.04060 1.20424 0.97300 0.95525 0.92414 1.21165 0.92688 1.02425 0.98788 1.21272 0.95021 0.96577 0.96323 1.19977 0.92417 1.08925 0.95514 1.18708 0.88172 0.77734 0.81452 1.90610 1.70824 1.48134 1.38526 1.48082 1.07641 1.56302 1.19456 1.20114 0.93962 0.94130 0.81709 1.21551 1.34994 1.04020 0.98257 0.93286 1.25538 0.94263 0.96922 1.00037 1.70003 1.33889 1.23929 1.26300 0.85630 0.78239 0.79296 0.79337 1.20002 1.20123 1.19924 1.21517 0.79786 0.98032 1.00792 1.21410 0.98009 0.94666 0.98224 1.21813 1.00410 0.97137 1.00253 1.21700 0.92672 1.02379 1.02422 1.23140 0.96102 0.93150 1.00442 1.21176 0.93535 1.02683 0.98588 0.92300 0.91581 0.92541 0.93266 0.91751 0.88899 0.90537 0.82571 0.85415 0.95695 0.92142 0.91968 0.90356 0.92029 0.93042 0.91259 0.94552 0.92573 0.92569 0.90996 0.91743 0.81034 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 3 C -0.08 -1.63 5.34 29.85 0.16 -1.47 16 4 C -0.06 -1.65 5.14 -19.81 -0.10 -1.75 16 5 C -0.13 -3.82 9.68 22.23 0.22 -3.61 16 6 C -0.07 -2.60 9.60 22.53 0.22 -2.38 16 7 C -0.17 -7.05 5.57 -20.09 -0.11 -7.16 16 8 C 0.55 25.50 7.42 86.79 0.64 26.14 16 9 O -0.60 -29.42 16.36 -3.89 -0.06 -29.48 16 10 N -0.59 -26.45 2.20 -829.58 -1.82 -28.27 16 11 C 0.22 10.70 3.94 85.64 0.34 11.03 16 12 C -0.55 -28.41 7.48 25.60 0.19 -28.22 16 13 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 14 C 0.04 1.78 5.34 84.66 0.45 2.23 16 15 N -0.90 -47.46 13.29 21.45 0.28 -47.18 16 16 Si 0.95 40.92 29.54 68.60 2.03 42.94 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.12 4.79 4.83 86.38 0.42 5.21 16 21 C -0.10 -3.43 3.08 -10.79 -0.03 -3.47 16 22 C -0.14 -4.50 8.36 71.98 0.60 -3.90 16 23 C -0.13 -3.43 9.19 71.98 0.66 -2.77 16 24 C -0.11 -4.77 7.48 22.53 0.17 -4.60 16 25 C -0.14 -5.13 9.68 22.23 0.22 -4.92 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.13 4.32 7.93 -2.91 -0.02 4.30 16 35 H 0.03 1.27 6.32 -2.39 -0.02 1.25 16 36 H 0.06 3.06 4.06 -2.41 -0.01 3.05 16 37 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 38 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 39 H 0.06 2.49 7.52 -2.39 -0.02 2.47 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.35 6.18 -2.39 -0.01 1.34 16 43 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.17 8.40 3.08 -2.91 -0.01 8.39 16 48 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -59.99 381.75 6.27 -53.72 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.92 Total: 31.68 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 4.93 Total: -23.41 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.54 Total: -75.45 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -59.99 6.27 -53.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751374962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.676 kcal (2) G-P(sol) polarization free energy of solvation -59.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds