Wall clock time and date at job start Tue Mar 31 2020 08:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47039 * 2 1 4 4 C 1.53000 * 110.28426 * 173.08579 * 3 2 1 5 5 C 1.53000 * 109.47260 * 65.90435 * 4 3 2 6 6 C 1.54268 * 110.32072 * 295.20728 * 3 2 1 7 7 C 1.54381 * 105.05435 * 118.90058 * 6 3 2 8 8 N 1.48564 * 104.59842 * 336.14623 * 7 6 3 9 9 C 1.46891 * 110.99931 * 159.04108 * 8 7 6 10 10 C 1.50704 * 109.47311 * 69.87670 * 9 8 7 11 11 C 1.38302 * 119.92984 * 270.29848 * 10 9 8 12 12 C 1.38095 * 120.06765 * 180.29700 * 11 10 9 13 13 C 1.38884 * 119.93123 * 359.42342 * 12 11 10 14 14 O 1.35750 * 120.06880 * 180.29820 * 13 12 11 15 15 C 1.34823 * 117.00153 * 5.89723 * 14 13 12 16 16 H 1.08006 * 119.99963 * 5.16446 * 15 14 13 17 17 C 1.38652 * 120.00170 * 185.16195 * 15 14 13 18 18 N 1.31557 * 120.00366 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00089 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47514 * 89.99615 * 19 17 15 21 21 H 1.48495 * 109.47276 * 210.00229 * 19 17 15 22 22 H 1.48509 * 109.47028 * 330.00114 * 19 17 15 23 23 C 1.38884 * 119.86018 * 0.27988 * 13 12 11 24 24 C 1.38093 * 119.92861 * 359.97438 * 23 13 12 25 25 C 1.48558 * 104.21993 * 39.48449 * 8 7 6 26 26 H 1.09000 * 109.47317 * 304.74305 * 1 2 3 27 27 H 1.08997 * 109.47248 * 64.73905 * 1 2 3 28 28 H 1.08997 * 109.47064 * 184.74157 * 1 2 3 29 29 H 1.09003 * 109.46934 * 239.99763 * 2 1 3 30 30 H 1.08999 * 109.46794 * 119.99759 * 2 1 3 31 31 H 1.09007 * 109.47155 * 185.90103 * 4 3 2 32 32 H 1.08998 * 109.47275 * 305.89884 * 4 3 2 33 33 H 1.08996 * 109.47081 * 302.26417 * 5 4 3 34 34 H 1.09004 * 109.47128 * 62.26683 * 5 4 3 35 35 H 1.09005 * 109.46909 * 182.26474 * 5 4 3 36 36 H 1.08993 * 110.32078 * 0.02562 * 6 3 2 37 37 H 1.08999 * 110.40829 * 237.83528 * 6 3 2 38 38 H 1.08997 * 110.41099 * 217.37028 * 7 6 3 39 39 H 1.08999 * 110.51453 * 94.97695 * 7 6 3 40 40 H 1.08997 * 109.47361 * 309.87378 * 9 8 7 41 41 H 1.09002 * 109.47333 * 189.87402 * 9 8 7 42 42 H 1.07998 * 119.96421 * 359.97438 * 11 10 9 43 43 H 1.08002 * 120.03659 * 179.69381 * 12 11 10 44 44 H 0.96993 * 120.00292 * 179.97438 * 18 17 15 45 45 H 1.07994 * 120.03155 * 180.02562 * 23 13 12 46 46 H 1.07999 * 119.96575 * 180.02562 * 24 23 13 47 47 H 1.09002 * 110.41487 * 79.29683 * 25 8 7 48 48 H 1.08994 * 110.41323 * 201.74204 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5600 1.4677 0.1728 5 6 4.2231 0.8349 -1.0523 6 6 1.6377 2.1530 -1.3089 7 6 0.7454 3.3328 -0.8669 8 7 0.2100 2.9219 0.4566 9 6 -0.2391 4.0886 1.2279 10 6 -1.4800 4.6626 0.5939 11 6 -1.3689 5.6342 -0.3840 12 6 -2.5042 6.1666 -0.9625 13 6 -3.7581 5.7169 -0.5698 14 8 -4.8758 6.2340 -1.1410 15 6 -4.6987 7.0904 -2.1670 16 1 -3.7067 7.2723 -2.5535 17 6 -5.7899 7.7377 -2.7261 18 7 -5.6172 8.5731 -3.7277 19 14 -7.5056 7.4237 -2.0573 20 1 -7.7996 8.3946 -0.9730 21 1 -8.4995 7.5845 -3.1488 22 1 -7.5815 6.0419 -1.5184 23 6 -3.8661 4.7367 0.4081 24 6 -2.7272 4.2120 0.9865 25 6 1.3570 2.2528 1.1226 26 1 -0.3634 0.5857 0.8444 27 1 -0.3633 0.4385 -0.9294 28 1 -0.3633 -1.0241 0.0849 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8969 2.4993 0.2760 32 1 3.8336 0.9051 1.0653 33 1 3.8557 -0.1834 -1.1789 34 1 3.9823 1.4211 -1.9392 35 1 5.3039 0.8164 -0.9115 36 1 1.0765 1.4742 -1.9510 37 1 2.5221 2.5213 -1.8288 38 1 -0.0683 3.4808 -1.5768 39 1 1.3362 4.2438 -0.7717 40 1 0.5472 4.8433 1.2361 41 1 -0.4613 3.7843 2.2508 42 1 -0.3934 5.9806 -0.6919 43 1 -2.4169 6.9289 -1.7226 44 1 -6.3806 9.0256 -4.1190 45 1 -4.8398 4.3846 0.7153 46 1 -2.8105 3.4495 1.7468 47 1 2.0453 2.9936 1.5295 48 1 1.0038 1.5876 1.9105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756024207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:25 Heat of formation + Delta-G solvation = -11.066281 kcal Electronic energy + Delta-G solvation = -25006.659777 eV Core-core repulsion = 21640.630900 eV Total energy + Delta-G solvation = -3366.028877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13644 -39.07395 -36.97808 -35.03322 -32.40580 -31.99146 -30.94534 -30.24787 -29.23173 -27.74293 -25.68526 -24.38203 -23.41480 -22.89256 -21.99552 -21.16799 -20.23031 -18.52549 -17.84020 -17.17856 -16.22333 -15.70420 -14.97835 -14.91981 -14.69087 -14.36328 -14.22320 -13.88894 -13.78740 -13.62447 -13.38278 -13.20490 -12.66133 -12.51391 -12.32747 -12.24241 -12.11321 -11.90441 -11.71187 -11.64318 -11.44300 -11.24662 -11.19523 -10.97842 -10.79603 -10.71141 -10.59311 -10.42373 -10.35967 -10.26140 -10.11659 -9.38987 -8.85833 -8.37399 -8.20702 -7.28157 -6.40831 -4.07129 2.16619 2.22150 3.22691 3.26363 3.41439 4.07216 4.24720 4.37582 4.50535 4.56058 4.74770 4.91118 4.97994 5.06562 5.10067 5.11205 5.21624 5.29264 5.33095 5.37506 5.41671 5.47359 5.60048 5.65543 5.66887 5.69969 5.73327 5.77488 5.79283 5.84410 5.92860 5.97364 6.04721 6.05429 6.14937 6.15989 6.23940 6.33193 6.37722 6.54087 6.60716 6.82128 6.89756 7.07776 7.15944 7.29454 7.35582 7.64047 7.81198 8.05406 8.94777 9.58065 10.67021 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.002852 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.115011 B = 9814.956505 C =10052.110630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.061 4.061 4 C -0.111 4.111 5 C -0.154 4.154 6 C -0.118 4.118 7 C 0.036 3.964 8 N -0.497 5.497 9 C 0.100 3.900 10 C -0.167 4.167 11 C -0.066 4.066 12 C -0.221 4.221 13 C 0.160 3.840 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.194 4.194 24 C -0.055 4.055 25 C 0.039 3.961 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.279 0.721 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.039 0.961 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.652 -14.454 8.455 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.062 4.062 4 C -0.149 4.149 5 C -0.212 4.212 6 C -0.156 4.156 7 C -0.092 4.092 8 N -0.221 5.221 9 C -0.027 4.027 10 C -0.168 4.168 11 C -0.085 4.085 12 C -0.240 4.240 13 C 0.108 3.892 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.074 4.074 25 C -0.089 4.089 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.057 0.943 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.827 -14.673 8.296 23.122 hybrid contribution 0.032 0.754 0.119 0.764 sum 15.859 -13.919 8.415 22.717 Atomic orbital electron populations 1.21800 0.94722 1.00257 1.03750 1.21530 0.96881 0.94574 1.01132 1.21361 0.94049 0.95679 0.95095 1.21596 0.94051 1.00801 0.98428 1.21863 0.99836 1.01129 0.98330 1.22533 0.99016 0.97238 0.96765 1.23088 0.97593 0.95968 0.92543 1.65527 1.30089 1.23866 1.02578 1.20972 0.94510 0.90639 0.96609 1.19110 0.93616 1.01701 1.02398 1.20626 0.97144 0.95634 0.95109 1.21233 0.91899 1.05265 1.05619 1.19147 0.86465 0.92065 0.91494 1.83584 1.28468 1.55468 1.44841 1.20752 0.97617 1.20638 1.07356 0.87738 1.24465 0.99482 0.94620 0.95469 1.69645 1.32481 1.26634 1.23140 0.86181 0.82032 0.80121 0.78580 1.19936 1.20797 1.18317 1.20202 0.98686 1.01006 1.01407 1.20438 0.91201 0.97503 0.98272 1.23204 0.91902 0.97055 0.96697 0.91038 0.92441 0.94170 0.92309 0.92618 0.92207 0.92053 0.92487 0.92363 0.93102 0.90908 0.91370 0.89845 0.94297 0.94806 0.90872 0.87832 0.85121 0.91081 0.86648 0.86983 0.94305 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.90 37.16 0.33 -1.19 16 2 C -0.10 -0.91 4.44 -26.73 -0.12 -1.03 16 3 C -0.06 -0.55 0.60 -153.12 -0.09 -0.64 16 4 C -0.11 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C -0.15 -1.09 9.39 37.16 0.35 -0.74 16 6 C -0.12 -1.18 5.30 -25.34 -0.13 -1.32 16 7 C 0.04 0.44 5.45 -2.18 -0.01 0.43 16 8 N -0.50 -6.07 4.16 -231.42 -0.96 -7.04 16 9 C 0.10 1.31 4.96 -4.98 -0.02 1.29 16 10 C -0.17 -2.74 5.11 -104.57 -0.53 -3.27 16 11 C -0.07 -1.19 8.70 -39.61 -0.34 -1.54 16 12 C -0.22 -4.77 9.13 -39.39 -0.36 -5.13 16 13 C 0.16 3.72 6.65 -39.10 -0.26 3.46 16 14 O -0.22 -5.81 8.59 0.07 0.00 -5.81 16 15 C -0.39 -11.00 9.90 30.89 0.31 -10.69 16 16 H 0.11 3.03 5.53 -52.48 -0.29 2.74 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 19 Si 0.91 21.82 28.62 -169.99 -4.86 16.96 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.19 -3.87 9.99 -39.40 -0.39 -4.27 16 24 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 25 C 0.04 0.39 4.77 -2.18 -0.01 0.38 16 26 H 0.07 0.81 5.91 -51.93 -0.31 0.50 16 27 H 0.06 0.67 6.95 -51.93 -0.36 0.31 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 6.96 -51.93 -0.36 0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.02 -51.93 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 34 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.76 6.72 -51.93 -0.35 0.42 16 37 H 0.07 0.63 6.14 -51.93 -0.32 0.31 16 38 H 0.08 1.19 7.80 -51.93 -0.40 0.79 16 39 H 0.04 0.47 7.82 -51.93 -0.41 0.06 16 40 H 0.03 0.43 7.82 -51.93 -0.41 0.03 16 41 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.10 1.64 8.04 -52.49 -0.42 1.22 16 43 H 0.13 2.99 5.72 -52.49 -0.30 2.69 16 44 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 47 H 0.04 0.38 7.63 -51.93 -0.40 -0.01 16 48 H 0.08 0.77 7.08 -51.93 -0.37 0.40 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -28.60 366.29 -9.32 -37.92 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.88 Total: 2.16 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -1.91 Total: -24.89 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: -0.19 Total: -31.85 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: 0.00 Total: -5.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.60 -9.32 -37.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756024207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.855 kcal (2) G-P(sol) polarization free energy of solvation -28.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds