Wall clock time and date at job start Tue Mar 31 2020 08:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47381 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46749 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46932 * 180.02562 * 6 5 4 8 8 H 1.08990 * 109.47143 * 54.99498 * 7 6 5 9 9 C 1.52995 * 109.47124 * 175.00104 * 7 6 5 10 10 N 1.46506 * 109.46597 * 294.99826 * 7 6 5 11 11 C 1.34777 * 119.99371 * 155.00267 * 10 7 6 12 12 O 1.21587 * 120.00484 * 359.97438 * 11 10 7 13 13 C 1.47647 * 119.99578 * 179.97438 * 11 10 7 14 14 C 1.40007 * 119.89735 * 359.72371 * 13 11 10 15 15 C 1.36315 * 120.10916 * 179.75894 * 14 13 11 16 16 C 1.40885 * 119.88881 * 0.51787 * 15 14 13 17 17 C 1.41113 * 120.10502 * 179.71850 * 16 15 14 18 18 H 1.07995 * 120.00047 * 155.08147 * 17 16 15 19 19 C 1.40223 * 119.99351 * 335.07935 * 17 16 15 20 20 N 1.30646 * 120.00581 * 342.20235 * 19 17 16 21 21 Si 1.86807 * 119.99617 * 162.20615 * 19 17 16 22 22 H 1.48507 * 109.46752 * 94.66047 * 21 19 17 23 23 H 1.48496 * 109.47078 * 214.65838 * 21 19 17 24 24 H 1.48492 * 109.47248 * 334.66234 * 21 19 17 25 25 C 1.40892 * 119.79581 * 359.73443 * 16 15 14 26 26 C 1.36316 * 119.88709 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47059 * 60.00299 * 1 2 3 28 28 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47269 * 300.00357 * 1 2 3 30 30 H 1.09003 * 109.47269 * 239.99643 * 2 1 3 31 31 H 1.09005 * 109.46939 * 120.00218 * 2 1 3 32 32 H 1.09003 * 109.47211 * 59.99607 * 3 2 1 33 33 H 1.09002 * 109.46780 * 299.99872 * 3 2 1 34 34 H 1.09005 * 109.46840 * 59.99932 * 4 3 2 35 35 H 1.08996 * 109.46724 * 300.00322 * 4 3 2 36 36 H 1.09000 * 109.46658 * 60.00428 * 5 4 3 37 37 H 1.09002 * 109.47141 * 299.99931 * 5 4 3 38 38 H 1.08997 * 109.47670 * 60.00435 * 6 5 4 39 39 H 1.09002 * 109.47192 * 299.99838 * 6 5 4 40 40 H 1.09000 * 109.47165 * 179.97438 * 9 7 6 41 41 H 1.09004 * 109.47648 * 59.99484 * 9 7 6 42 42 H 1.09001 * 109.47004 * 299.99607 * 9 7 6 43 43 H 0.96991 * 120.00470 * 335.00025 * 10 7 6 44 44 H 1.08007 * 119.94335 * 0.02562 * 14 13 11 45 45 H 1.07994 * 120.05523 * 180.22760 * 15 14 13 46 46 H 0.97003 * 119.99947 * 179.97438 * 20 19 17 47 47 H 1.07994 * 120.05897 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.94596 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8848 0.0000 7 6 6.1201 4.3274 0.0000 8 1 5.6855 4.8664 0.8417 9 6 7.6449 4.3292 0.1257 10 7 5.7325 4.9823 -1.2519 11 6 5.6058 6.3232 -1.2997 12 8 5.8126 6.9894 -0.3038 13 6 5.2157 6.9833 -2.5615 14 6 4.9837 6.2147 -3.7084 15 6 4.6186 6.8192 -4.8744 16 6 4.4855 8.2208 -4.9269 17 6 4.1136 8.8518 -6.1330 18 1 3.6285 9.8164 -6.1105 19 6 4.3739 8.2262 -7.3607 20 7 5.2471 7.2567 -7.4277 21 14 3.4723 8.7793 -8.9004 22 1 4.2997 9.7753 -9.6276 23 1 3.2248 7.6067 -9.7772 24 1 2.1759 9.3957 -8.5204 25 6 4.7252 8.9905 -3.7714 26 6 5.0851 8.3765 -2.6088 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8892 35 1 3.9329 0.9287 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7171 3.3982 -0.8905 38 1 5.9734 2.3707 -0.8897 39 1 5.9734 2.3714 0.8902 40 1 8.0083 5.3568 0.1252 41 1 8.0796 3.7901 -0.7161 42 1 7.9332 3.8419 1.0571 43 1 5.5672 4.4509 -2.0463 44 1 5.0900 5.1406 -3.6682 45 1 4.4363 6.2251 -5.7576 46 1 5.4268 6.8238 -8.2770 47 1 4.6248 10.0652 -3.8069 48 1 5.2694 8.9657 -1.7226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758218489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:42 Heat of formation + Delta-G solvation = -82.412926 kcal Electronic energy + Delta-G solvation = -24000.356671 eV Core-core repulsion = 20631.233972 eV Total energy + Delta-G solvation = -3369.122699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.89125 -39.08353 -37.88417 -36.47431 -35.66259 -33.84601 -32.51091 -31.33668 -31.10755 -29.06736 -27.66703 -25.40077 -23.97253 -22.86752 -22.31643 -21.85406 -21.53713 -21.22015 -19.36215 -18.37617 -17.48212 -17.03090 -16.62027 -15.82761 -15.76266 -15.57398 -15.34997 -14.97443 -14.91679 -14.53352 -14.42573 -14.29708 -13.92984 -13.69414 -13.53642 -13.48533 -13.26168 -13.00484 -12.83735 -12.66649 -12.61922 -12.42019 -12.35791 -12.23108 -11.87183 -11.77850 -11.74472 -11.54115 -11.37243 -11.31771 -11.17031 -11.10762 -10.64166 -9.99349 -9.57217 -9.39541 -8.79244 -6.47972 0.45722 1.14682 1.38633 1.42511 1.54921 2.13635 2.19259 2.46263 2.80041 3.62685 3.69512 3.99688 4.02591 4.13316 4.22874 4.27577 4.31251 4.32821 4.42374 4.45222 4.59383 4.63396 4.66425 4.80842 4.86169 4.89900 4.91822 4.95147 5.02049 5.02892 5.09620 5.14081 5.16468 5.20646 5.26387 5.27932 5.30984 5.34860 5.44234 5.50861 5.56544 5.58512 5.73403 5.83483 5.95502 5.99643 6.22993 6.54054 6.76344 6.77901 6.89489 7.50357 8.16244 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003137 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.000819 B = 8923.073731 C =10665.517141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.114 4.114 7 C 0.138 3.862 8 H 0.062 0.938 9 C -0.158 4.158 10 N -0.717 5.717 11 C 0.572 3.428 12 O -0.607 6.607 13 C -0.293 4.293 14 C -0.052 4.052 15 C -0.198 4.198 16 C 0.102 3.898 17 C -0.475 4.475 18 H 0.084 0.916 19 C 0.038 3.962 20 N -0.798 5.798 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.258 1.258 25 C -0.254 4.254 26 C -0.035 4.035 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.405 0.595 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.297 0.703 47 H 0.103 0.897 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -15.498 7.598 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.151 4.151 7 C 0.034 3.966 8 H 0.080 0.920 9 C -0.216 4.216 10 N -0.369 5.369 11 C 0.365 3.635 12 O -0.492 6.492 13 C -0.297 4.297 14 C -0.071 4.071 15 C -0.217 4.217 16 C 0.098 3.902 17 C -0.502 4.502 18 H 0.102 0.898 19 C -0.181 4.181 20 N -0.422 5.422 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.185 1.185 24 H -0.181 1.181 25 C -0.274 4.274 26 C -0.054 4.054 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.242 0.758 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.108 0.892 47 H 0.121 0.879 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.698 -15.249 8.153 17.501 hybrid contribution -0.253 0.553 -1.005 1.174 sum -2.951 -14.696 7.149 16.607 Atomic orbital electron populations 1.21804 0.95962 1.01908 1.01626 1.21522 0.95875 0.96342 1.02259 1.21642 0.95878 0.97145 1.01467 1.21546 0.94988 0.95708 1.02639 1.21587 0.95346 0.97452 1.01441 1.21845 0.95497 0.93350 1.04430 1.21058 0.95124 0.94102 0.86283 0.91991 1.22140 0.95118 1.01082 1.03272 1.45885 1.70897 1.05969 1.14171 1.18381 0.75092 0.82447 0.87589 1.90603 1.55026 1.65508 1.38090 1.19233 1.22340 0.94111 0.94030 1.20707 0.96255 0.98323 0.91854 1.21004 1.08588 0.94633 0.97457 1.18131 0.86506 0.92762 0.92764 1.20100 1.33702 1.05325 0.91093 0.89761 1.26917 0.93492 0.93504 1.04147 1.69762 1.23640 1.18808 1.29977 0.85115 0.79303 0.79216 0.75722 1.18625 1.18493 1.18133 1.20858 1.13468 0.98502 0.94522 1.20514 0.94669 0.93796 0.96431 0.93248 0.92057 0.92855 0.91905 0.91461 0.92541 0.93100 0.91510 0.90960 0.92967 0.93310 0.90153 0.88457 0.95192 0.91545 0.89530 0.75844 0.85947 0.86840 0.89184 0.87897 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.12 -1.75 5.93 30.59 0.18 -1.57 16 3 C -0.12 -2.08 5.21 30.59 0.16 -1.93 16 4 C -0.11 -1.75 5.21 30.59 0.16 -1.59 16 5 C -0.12 -2.38 5.10 30.59 0.16 -2.23 16 6 C -0.11 -2.05 4.75 30.60 0.15 -1.90 16 7 C 0.14 3.62 2.58 44.99 0.12 3.74 16 8 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 9 C -0.16 -3.83 9.48 71.98 0.68 -3.15 16 10 N -0.72 -22.95 4.48 -445.58 -2.00 -24.95 16 11 C 0.57 24.30 7.73 86.73 0.67 24.97 16 12 O -0.61 -29.40 15.98 -3.99 -0.06 -29.46 16 13 C -0.29 -13.54 5.89 -19.93 -0.12 -13.65 16 14 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 15 C -0.20 -9.81 8.63 22.47 0.19 -9.62 16 16 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 17 C -0.47 -24.18 9.04 23.46 0.21 -23.97 16 18 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 19 C 0.04 1.79 5.13 85.35 0.44 2.23 16 20 N -0.80 -38.19 10.97 21.87 0.24 -37.95 16 21 Si 0.99 34.84 29.60 68.60 2.03 36.87 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 23 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 24 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 25 C -0.25 -12.83 9.73 22.47 0.22 -12.61 16 26 C -0.03 -1.71 9.52 22.25 0.21 -1.50 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.40 11.38 6.60 -92.72 -0.61 10.77 16 44 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 45 H 0.11 5.69 6.17 -2.91 -0.02 5.68 16 46 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 47 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 48 H 0.10 4.83 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -61.16 389.76 4.75 -56.41 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: 0.31 Total: 40.21 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 4.23 Total: -41.14 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -1.76 Total: -62.90 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.06 Total: -29.46 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -61.16 4.75 -56.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758218489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.000 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds