Wall clock time and date at job start Tue Mar 31 2020 08:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47151 * 185.16258 * 5 4 3 7 7 H 1.08998 * 109.47119 * 55.37838 * 6 5 4 8 8 C 1.52992 * 109.47150 * 295.37579 * 6 5 4 9 9 C 1.52999 * 109.47348 * 304.07254 * 8 6 5 10 10 C 1.50707 * 109.46836 * 175.38076 * 6 5 4 11 11 O 1.21279 * 120.00183 * 359.97438 * 10 6 5 12 12 N 1.34770 * 119.99785 * 180.02562 * 10 6 5 13 13 C 1.39238 * 120.00400 * 174.69107 * 12 10 6 14 14 C 1.39480 * 119.83713 * 215.37728 * 13 12 10 15 15 C 1.36378 * 120.16900 * 179.75569 * 14 13 12 16 16 C 1.40873 * 119.82532 * 0.51687 * 15 14 13 17 17 C 1.41150 * 120.16197 * 179.71601 * 16 15 14 18 18 H 1.07996 * 120.00389 * 212.93113 * 17 16 15 19 19 C 1.39907 * 119.99955 * 32.93488 * 17 16 15 20 20 N 1.30880 * 119.99916 * 6.66669 * 19 17 16 21 21 Si 1.86806 * 120.00188 * 186.66986 * 19 17 16 22 22 H 1.48499 * 109.46789 * 89.99918 * 21 19 17 23 23 H 1.48498 * 109.46958 * 209.99760 * 21 19 17 24 24 H 1.48500 * 109.46838 * 330.00097 * 21 19 17 25 25 C 1.40871 * 119.67461 * 359.73782 * 16 15 14 26 26 C 1.36371 * 119.82669 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46805 * 299.99754 * 1 2 3 28 28 H 1.08997 * 109.47193 * 59.99863 * 1 2 3 29 29 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 240.00502 * 2 1 3 31 31 H 1.08998 * 109.47639 * 119.99843 * 2 1 3 32 32 H 1.09000 * 109.47066 * 60.00407 * 3 2 1 33 33 H 1.08997 * 109.47185 * 300.00142 * 3 2 1 34 34 H 1.08999 * 109.47271 * 60.00502 * 4 3 2 35 35 H 1.08997 * 109.47193 * 300.00136 * 4 3 2 36 36 H 1.09001 * 109.46741 * 65.16332 * 5 4 3 37 37 H 1.08998 * 109.47113 * 305.16611 * 5 4 3 38 38 H 1.08999 * 109.47264 * 64.07075 * 8 6 5 39 39 H 1.09001 * 109.47464 * 184.07388 * 8 6 5 40 40 H 1.09005 * 109.47542 * 185.66670 * 9 8 6 41 41 H 1.09000 * 109.47243 * 305.66268 * 9 8 6 42 42 H 1.08998 * 109.47321 * 65.67030 * 9 8 6 43 43 H 0.97003 * 120.00184 * 354.68371 * 12 10 6 44 44 H 1.07998 * 119.91226 * 0.02562 * 14 13 12 45 45 H 1.07993 * 120.08630 * 180.24977 * 15 14 13 46 46 H 0.96996 * 119.99668 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.08564 * 179.97438 * 25 16 15 48 48 H 1.08004 * 119.91498 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6045 2.8869 -0.1292 7 1 5.8944 2.3286 -1.0193 8 6 6.2219 2.2313 1.1077 9 6 5.7335 2.9533 2.3651 10 6 6.0971 4.3066 -0.2439 11 8 5.3067 5.2262 -0.2248 12 7 7.4160 4.5541 -0.3688 13 6 7.8628 5.8549 -0.5857 14 6 8.9706 6.0811 -1.4024 15 6 9.4109 7.3527 -1.6235 16 6 8.7505 8.4385 -1.0156 17 6 9.2039 9.7571 -1.2347 18 1 9.1126 10.4965 -0.4528 19 6 9.7716 10.1063 -2.4648 20 7 9.7643 9.2509 -3.4553 21 14 10.5400 11.7936 -2.6935 22 1 11.9781 11.7363 -2.3276 23 1 10.4065 12.2100 -4.1127 24 1 9.8462 12.7757 -1.8221 25 6 7.6356 8.2017 -0.1877 26 6 7.2040 6.9249 0.0200 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.7937 3.3720 0.9322 37 1 3.6434 3.4244 -0.8406 38 1 5.9232 1.1840 1.1510 39 1 7.3084 2.2973 1.0498 40 1 6.2496 2.5529 3.2377 41 1 5.9432 4.0193 2.2766 42 1 4.6599 2.8022 2.4770 43 1 8.0541 3.8261 -0.3075 44 1 9.4782 5.2473 -1.8645 45 1 10.2663 7.5266 -2.2593 46 1 10.1582 9.4929 -4.3080 47 1 7.1246 9.0291 0.2820 48 1 6.3496 6.7417 0.6548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775647617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:07 Heat of formation + Delta-G solvation = -58.900023 kcal Electronic energy + Delta-G solvation = -24245.962844 eV Core-core repulsion = 20877.859741 eV Total energy + Delta-G solvation = -3368.103103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.02970 -37.70067 -36.61354 -34.92596 -34.39621 -32.86495 -31.37965 -29.56167 -29.11976 -28.22318 -25.71449 -24.50759 -23.04304 -21.92291 -21.28488 -20.90056 -20.17613 -18.81523 -17.30580 -16.84651 -16.30456 -16.04906 -15.39430 -15.15718 -14.83399 -14.21390 -13.91524 -13.79353 -13.52149 -13.43039 -13.01402 -12.80699 -12.72375 -12.56545 -12.09503 -12.03841 -11.96512 -11.73108 -11.42330 -11.37845 -11.27656 -11.15082 -11.13069 -10.93183 -10.79450 -10.78112 -10.71976 -10.53442 -10.44087 -9.93656 -9.47437 -9.35274 -9.02614 -8.80797 -7.52823 -6.87059 -6.64750 -4.30461 2.60281 3.05299 3.09418 3.11115 3.14168 3.39175 3.76782 3.98338 4.52740 4.68616 4.70664 4.76516 4.85739 4.90076 4.94588 5.12864 5.23009 5.31606 5.39279 5.49655 5.54105 5.58430 5.66929 5.68652 5.71574 5.77012 5.81873 5.90813 5.94791 5.99037 6.04258 6.13078 6.20796 6.21202 6.28238 6.45180 6.48064 6.79506 6.96192 7.08780 7.23200 7.31436 7.63624 7.75995 7.90650 8.07152 8.31165 8.32841 8.63197 8.82221 8.92987 9.02812 10.29448 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.002407 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.962245 B =11627.772304 C =11906.331085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.108 4.108 7 H 0.092 0.908 8 C -0.114 4.114 9 C -0.157 4.157 10 C 0.505 3.495 11 O -0.531 6.531 12 N -0.653 5.653 13 C 0.003 3.997 14 C -0.120 4.120 15 C -0.141 4.141 16 C 0.104 3.896 17 C -0.463 4.463 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.808 5.808 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.209 4.209 26 C -0.083 4.083 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.394 0.606 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.278 0.722 47 H 0.095 0.905 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 -17.191 5.800 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.140 4.140 6 C -0.129 4.129 7 H 0.110 0.890 8 C -0.152 4.152 9 C -0.214 4.214 10 C 0.291 3.709 11 O -0.408 6.408 12 N -0.296 5.296 13 C -0.090 4.090 14 C -0.140 4.140 15 C -0.161 4.161 16 C 0.102 3.898 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.145 4.145 20 N -0.435 5.435 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.103 4.103 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.227 0.773 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.089 0.911 47 H 0.113 0.887 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.800 -16.556 5.546 19.553 hybrid contribution 0.712 0.379 -0.387 0.895 sum -8.088 -16.177 5.160 18.808 Atomic orbital electron populations 1.21783 0.96087 1.01364 1.01861 1.21539 0.95711 0.97177 1.01808 1.21623 0.95548 0.96417 1.02272 1.21652 0.95258 0.96880 1.01887 1.21445 0.92534 0.96295 1.03716 1.21412 0.97612 0.93900 0.99979 0.88985 1.21518 1.00146 0.99737 0.93799 1.21863 1.01421 1.01173 0.96962 1.20531 0.82410 0.90929 0.77000 1.90671 1.54856 1.46043 1.49245 1.43027 1.06818 1.08750 1.70987 1.17249 1.01966 0.82768 1.06988 1.20272 0.97749 0.97118 0.98865 1.20929 1.01458 0.90459 1.03275 1.17691 0.89059 0.93453 0.89639 1.19506 1.34890 0.96034 0.98891 0.90554 1.25880 0.93936 0.99117 0.95532 1.69799 1.35252 1.35776 1.02659 0.86243 0.79900 0.81991 0.78111 1.19462 1.20373 1.18731 1.20774 0.99412 0.94997 1.07691 1.20403 0.98899 0.92155 0.98796 0.92787 0.92758 0.92994 0.92170 0.92200 0.92006 0.91940 0.92149 0.91879 0.90875 0.91188 0.90972 0.91719 0.92760 0.92278 0.92177 0.77287 0.89179 0.86083 0.91090 0.88669 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 4 C -0.12 -1.05 4.83 -26.73 -0.13 -1.18 16 5 C -0.10 -1.19 3.71 -26.73 -0.10 -1.29 16 6 C -0.11 -1.29 2.52 -91.77 -0.23 -1.52 16 7 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 8 C -0.11 -1.12 5.30 -26.74 -0.14 -1.26 16 9 C -0.16 -1.70 9.16 37.16 0.34 -1.36 16 10 C 0.50 8.68 5.84 -10.98 -0.06 8.62 16 11 O -0.53 -11.41 13.34 5.56 0.07 -11.34 16 12 N -0.65 -11.49 5.21 -9.74 -0.05 -11.54 16 13 C 0.00 0.06 6.30 -83.57 -0.53 -0.47 16 14 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 15 C -0.14 -3.66 8.58 -39.26 -0.34 -4.00 16 16 C 0.10 2.83 5.52 -106.80 -0.59 2.24 16 17 C -0.46 -12.48 9.03 -37.85 -0.34 -12.82 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.07 1.81 5.30 -17.33 -0.09 1.72 16 20 N -0.81 -21.31 10.91 55.55 0.61 -20.70 16 21 Si 0.91 19.10 29.57 -169.99 -5.03 14.08 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.21 -5.38 9.74 -39.26 -0.38 -5.76 16 26 C -0.08 -2.01 8.62 -39.79 -0.34 -2.35 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 6.91 -51.93 -0.36 0.15 16 36 H 0.07 0.92 6.23 -51.93 -0.32 0.59 16 37 H 0.07 0.95 7.97 -51.93 -0.41 0.53 16 38 H 0.07 0.57 6.88 -51.93 -0.36 0.21 16 39 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.81 7.17 -51.93 -0.37 0.43 16 42 H 0.06 0.61 6.59 -51.93 -0.34 0.27 16 43 H 0.39 5.50 8.04 -40.82 -0.33 5.17 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.12 3.22 6.39 -52.49 -0.34 2.89 16 46 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 47 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 48 H 0.11 2.57 6.22 -52.48 -0.33 2.24 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -30.00 379.17 -10.10 -40.10 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.16 Total: 9.20 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.26 Total: -25.51 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.56 Total: -32.25 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.00 -10.10 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775647617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.796 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds