Wall clock time and date at job start Tue Mar 31 2020 08:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47151 * 185.16258 * 5 4 3 7 7 H 1.08998 * 109.47119 * 55.37838 * 6 5 4 8 8 C 1.52992 * 109.47150 * 295.37579 * 6 5 4 9 9 C 1.52999 * 109.47348 * 304.07254 * 8 6 5 10 10 C 1.50707 * 109.46836 * 175.38076 * 6 5 4 11 11 O 1.21279 * 120.00183 * 359.97438 * 10 6 5 12 12 N 1.34770 * 119.99785 * 180.02562 * 10 6 5 13 13 C 1.39238 * 120.00400 * 174.69107 * 12 10 6 14 14 C 1.39480 * 119.83713 * 215.37728 * 13 12 10 15 15 C 1.36378 * 120.16900 * 179.75569 * 14 13 12 16 16 C 1.40873 * 119.82532 * 0.51687 * 15 14 13 17 17 C 1.41150 * 120.16197 * 179.71601 * 16 15 14 18 18 H 1.07996 * 120.00389 * 212.93113 * 17 16 15 19 19 C 1.39907 * 119.99955 * 32.93488 * 17 16 15 20 20 N 1.30880 * 119.99916 * 6.66669 * 19 17 16 21 21 Si 1.86806 * 120.00188 * 186.66986 * 19 17 16 22 22 H 1.48499 * 109.46789 * 89.99918 * 21 19 17 23 23 H 1.48498 * 109.46958 * 209.99760 * 21 19 17 24 24 H 1.48500 * 109.46838 * 330.00097 * 21 19 17 25 25 C 1.40871 * 119.67461 * 359.73782 * 16 15 14 26 26 C 1.36371 * 119.82669 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46805 * 299.99754 * 1 2 3 28 28 H 1.08997 * 109.47193 * 59.99863 * 1 2 3 29 29 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 240.00502 * 2 1 3 31 31 H 1.08998 * 109.47639 * 119.99843 * 2 1 3 32 32 H 1.09000 * 109.47066 * 60.00407 * 3 2 1 33 33 H 1.08997 * 109.47185 * 300.00142 * 3 2 1 34 34 H 1.08999 * 109.47271 * 60.00502 * 4 3 2 35 35 H 1.08997 * 109.47193 * 300.00136 * 4 3 2 36 36 H 1.09001 * 109.46741 * 65.16332 * 5 4 3 37 37 H 1.08998 * 109.47113 * 305.16611 * 5 4 3 38 38 H 1.08999 * 109.47264 * 64.07075 * 8 6 5 39 39 H 1.09001 * 109.47464 * 184.07388 * 8 6 5 40 40 H 1.09005 * 109.47542 * 185.66670 * 9 8 6 41 41 H 1.09000 * 109.47243 * 305.66268 * 9 8 6 42 42 H 1.08998 * 109.47321 * 65.67030 * 9 8 6 43 43 H 0.97003 * 120.00184 * 354.68371 * 12 10 6 44 44 H 1.07998 * 119.91226 * 0.02562 * 14 13 12 45 45 H 1.07993 * 120.08630 * 180.24977 * 15 14 13 46 46 H 0.96996 * 119.99668 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.08564 * 179.97438 * 25 16 15 48 48 H 1.08004 * 119.91498 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6045 2.8869 -0.1292 7 1 5.8944 2.3286 -1.0193 8 6 6.2219 2.2313 1.1077 9 6 5.7335 2.9533 2.3651 10 6 6.0971 4.3066 -0.2439 11 8 5.3067 5.2262 -0.2248 12 7 7.4160 4.5541 -0.3688 13 6 7.8628 5.8549 -0.5857 14 6 8.9706 6.0811 -1.4024 15 6 9.4109 7.3527 -1.6235 16 6 8.7505 8.4385 -1.0156 17 6 9.2039 9.7571 -1.2347 18 1 9.1126 10.4965 -0.4528 19 6 9.7716 10.1063 -2.4648 20 7 9.7643 9.2509 -3.4553 21 14 10.5400 11.7936 -2.6935 22 1 11.9781 11.7363 -2.3276 23 1 10.4065 12.2100 -4.1127 24 1 9.8462 12.7757 -1.8221 25 6 7.6356 8.2017 -0.1877 26 6 7.2040 6.9249 0.0200 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9288 0.8908 36 1 3.7937 3.3720 0.9322 37 1 3.6434 3.4244 -0.8406 38 1 5.9232 1.1840 1.1510 39 1 7.3084 2.2973 1.0498 40 1 6.2496 2.5529 3.2377 41 1 5.9432 4.0193 2.2766 42 1 4.6599 2.8022 2.4770 43 1 8.0541 3.8261 -0.3075 44 1 9.4782 5.2473 -1.8645 45 1 10.2663 7.5266 -2.2593 46 1 10.1582 9.4929 -4.3080 47 1 7.1246 9.0291 0.2820 48 1 6.3496 6.7417 0.6548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775647617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:06 Heat of formation + Delta-G solvation = -73.570014 kcal Electronic energy + Delta-G solvation = -24246.598983 eV Core-core repulsion = 20877.859741 eV Total energy + Delta-G solvation = -3368.739242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46851 -39.35240 -37.71665 -36.14144 -35.76145 -34.64310 -32.14626 -31.48352 -30.86896 -29.25884 -27.11023 -25.81773 -24.01258 -23.41224 -22.75609 -21.95793 -21.55450 -20.06980 -19.25419 -18.31471 -17.65373 -17.10223 -16.99706 -16.40092 -15.85864 -15.67557 -15.36053 -14.98177 -14.62823 -14.50687 -14.24019 -14.16582 -13.97036 -13.78661 -13.64879 -13.47566 -13.25661 -12.86461 -12.81030 -12.76166 -12.71064 -12.49378 -12.19505 -12.00837 -11.88065 -11.73078 -11.57556 -11.48991 -11.40097 -11.32113 -11.24846 -11.18237 -10.72105 -10.44132 -9.48660 -8.77154 -8.55426 -6.32253 0.79789 1.11403 1.38552 1.45049 1.52160 1.85000 2.22778 2.38822 2.78409 3.65815 3.72519 3.75828 3.92441 4.09513 4.14728 4.25751 4.35669 4.39885 4.43930 4.50145 4.56123 4.63206 4.72874 4.78250 4.86833 4.91083 4.96877 4.98694 5.05789 5.12753 5.13650 5.15467 5.19273 5.22598 5.27505 5.29858 5.32243 5.38095 5.43780 5.48930 5.53381 5.61786 5.66707 5.89163 6.02013 6.10851 6.37738 6.64708 6.76808 6.93982 6.98448 7.45116 8.40200 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.002407 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.962245 B =11627.772304 C =11906.331085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.099 4.099 6 C -0.097 4.097 7 H 0.119 0.881 8 C -0.109 4.109 9 C -0.158 4.158 10 C 0.501 3.499 11 O -0.578 6.578 12 N -0.646 5.646 13 C 0.020 3.980 14 C -0.118 4.118 15 C -0.157 4.157 16 C 0.072 3.928 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.029 3.971 20 N -0.839 5.839 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.262 1.262 25 C -0.226 4.226 26 C -0.095 4.095 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.022 0.978 42 H 0.063 0.937 43 H 0.416 0.584 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.286 0.714 47 H 0.093 0.907 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -19.898 5.783 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.118 4.118 7 H 0.136 0.864 8 C -0.147 4.147 9 C -0.215 4.215 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.291 5.291 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.177 4.177 16 C 0.069 3.931 17 C -0.530 4.530 18 H 0.090 0.910 19 C -0.183 4.183 20 N -0.467 5.467 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.186 1.186 25 C -0.246 4.246 26 C -0.115 4.115 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.253 0.747 44 H 0.144 0.856 45 H 0.128 0.872 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.322 -19.320 5.544 21.755 hybrid contribution 0.446 1.097 -0.326 1.228 sum -7.876 -18.223 5.218 20.527 Atomic orbital electron populations 1.21801 0.96020 1.01883 1.01592 1.21515 0.95806 0.96153 1.02434 1.21621 0.95608 0.97275 1.01491 1.21593 0.95169 0.94668 1.03248 1.21409 0.92378 0.98066 1.01880 1.21472 0.97620 0.90195 1.02479 0.86357 1.21574 1.00633 1.00961 0.91506 1.21870 1.02058 0.99045 0.98515 1.21593 0.81547 0.92868 0.74909 1.90658 1.55961 1.48189 1.50954 1.42987 1.07825 1.07443 1.70847 1.17320 1.00692 0.84534 1.04851 1.20539 0.97748 0.97153 0.98339 1.20931 1.01552 0.91512 1.03750 1.18009 0.89938 0.94350 0.90780 1.19727 1.37116 0.96265 0.99933 0.90955 1.26742 0.93758 1.03259 0.94573 1.69854 1.35795 1.37800 1.03221 0.85121 0.79121 0.76638 0.78277 1.18321 1.19369 1.18647 1.20894 0.99664 0.95817 1.08231 1.20503 0.99165 0.92434 0.99391 0.92958 0.93205 0.92077 0.91689 0.91339 0.92610 0.93075 0.90958 0.90130 0.92322 0.93781 0.87602 0.90603 0.91095 0.95922 0.91826 0.74701 0.85647 0.87219 0.90341 0.88905 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.50 5.93 30.59 0.18 -1.32 16 3 C -0.12 -1.89 5.21 30.59 0.16 -1.73 16 4 C -0.11 -1.61 4.83 30.59 0.15 -1.46 16 5 C -0.10 -2.19 3.71 30.60 0.11 -2.07 16 6 C -0.10 -2.07 2.52 -11.54 -0.03 -2.10 16 7 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.11 -1.72 5.30 30.59 0.16 -1.56 16 9 C -0.16 -3.09 9.16 71.98 0.66 -2.43 16 10 C 0.50 16.77 5.84 87.66 0.51 17.28 16 11 O -0.58 -25.28 13.34 -3.03 -0.04 -25.32 16 12 N -0.65 -21.67 5.21 -303.11 -1.58 -23.25 16 13 C 0.02 0.88 6.30 38.57 0.24 1.12 16 14 C -0.12 -5.35 9.90 22.14 0.22 -5.13 16 15 C -0.16 -8.34 8.58 22.48 0.19 -8.15 16 16 C 0.07 4.05 5.52 -21.28 -0.12 3.93 16 17 C -0.50 -28.05 9.03 23.39 0.21 -27.84 16 18 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16 19 C 0.03 1.52 5.30 85.24 0.45 1.97 16 20 N -0.84 -45.10 10.91 21.82 0.24 -44.86 16 21 Si 0.99 39.57 29.57 68.60 2.03 41.60 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 C -0.23 -12.20 9.74 22.48 0.22 -11.98 16 26 C -0.09 -4.74 8.62 22.14 0.19 -4.55 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.94 6.91 -2.39 -0.02 0.93 16 36 H 0.06 1.45 6.23 -2.39 -0.01 1.44 16 37 H 0.04 1.19 7.97 -2.39 -0.02 1.17 16 38 H 0.11 1.07 6.88 -2.39 -0.02 1.06 16 39 H 0.08 1.07 7.34 -2.39 -0.02 1.05 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.02 0.59 7.17 -2.39 -0.02 0.58 16 42 H 0.06 1.18 6.59 -2.39 -0.02 1.17 16 43 H 0.42 10.31 8.04 -92.71 -0.75 9.56 16 44 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.11 6.00 6.39 -2.91 -0.02 5.98 16 46 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 47 H 0.09 4.86 8.06 -2.91 -0.02 4.83 16 48 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -68.63 379.17 5.06 -63.56 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.19 Total: 35.47 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 4.23 Total: -47.21 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -1.34 Total: -68.11 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.04 Total: -25.32 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -68.63 5.06 -63.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775647617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.005 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds