Wall clock time and date at job start Tue Mar 31 2020 08:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46899 * 2 1 4 4 C 1.53003 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47270 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46839 * 304.99596 * 6 5 4 8 8 C 1.52993 * 109.47481 * 64.99659 * 6 5 4 9 9 C 1.53004 * 109.46882 * 53.55614 * 8 6 5 10 10 C 1.50706 * 109.46930 * 185.00030 * 6 5 4 11 11 O 1.21277 * 119.99995 * 308.80705 * 10 6 5 12 12 N 1.34779 * 119.99891 * 128.81194 * 10 6 5 13 13 C 1.39235 * 119.99643 * 172.12840 * 12 10 6 14 14 C 1.39480 * 119.83624 * 25.86409 * 13 12 10 15 15 C 1.36383 * 120.16648 * 179.72104 * 14 13 12 16 16 C 1.40869 * 119.82461 * 0.57283 * 15 14 13 17 17 C 1.41152 * 120.15725 * 179.67710 * 16 15 14 18 18 H 1.07998 * 120.00006 * 194.21060 * 17 16 15 19 19 C 1.39904 * 120.00621 * 14.21538 * 17 16 15 20 20 N 1.30876 * 119.99507 * 21.98345 * 19 17 16 21 21 Si 1.86795 * 120.00235 * 201.98879 * 19 17 16 22 22 H 1.48496 * 109.47329 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47286 * 119.99781 * 21 19 17 24 24 H 1.48504 * 109.47202 * 239.99335 * 21 19 17 25 25 C 1.40864 * 119.67531 * 359.69974 * 16 15 14 26 26 C 1.36370 * 119.82973 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47288 * 59.99921 * 1 2 3 28 28 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46906 * 300.00094 * 1 2 3 30 30 H 1.09000 * 109.46906 * 239.99906 * 2 1 3 31 31 H 1.08997 * 109.47288 * 120.00079 * 2 1 3 32 32 H 1.08993 * 109.47526 * 59.99865 * 3 2 1 33 33 H 1.09003 * 109.47071 * 299.99407 * 3 2 1 34 34 H 1.09000 * 109.47225 * 59.99710 * 4 3 2 35 35 H 1.09006 * 109.46904 * 299.99611 * 4 3 2 36 36 H 1.09000 * 109.47180 * 59.99747 * 5 4 3 37 37 H 1.09006 * 109.46892 * 299.99683 * 5 4 3 38 38 H 1.08996 * 109.47169 * 293.56121 * 8 6 5 39 39 H 1.08993 * 109.47276 * 173.55286 * 8 6 5 40 40 H 1.08997 * 109.47095 * 295.41700 * 9 8 6 41 41 H 1.09006 * 109.46888 * 175.42157 * 9 8 6 42 42 H 1.08997 * 109.47457 * 55.41883 * 9 8 6 43 43 H 0.96994 * 120.00135 * 352.12481 * 12 10 6 44 44 H 1.07994 * 119.91705 * 359.97438 * 14 13 12 45 45 H 1.07998 * 120.08412 * 180.25356 * 15 14 13 46 46 H 0.97005 * 120.00006 * 180.02562 * 20 19 17 47 47 H 1.08007 * 120.08593 * 179.97438 * 25 16 15 48 48 H 1.08004 * 119.91500 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 1 5.9733 2.2959 0.8409 8 6 6.1201 2.2747 -1.3082 9 6 5.4822 3.0019 -2.4937 10 6 6.1124 4.3004 0.1219 11 8 5.6939 5.1595 -0.6248 12 7 7.0267 4.6116 1.0620 13 6 7.6121 5.8749 1.0724 14 6 6.9308 6.9601 0.5215 15 6 7.4955 8.2014 0.5332 16 6 8.7753 8.3837 1.0928 17 6 9.3692 9.6641 1.1025 18 1 10.4230 9.7690 1.3147 19 6 8.5930 10.7974 0.8373 20 7 7.2955 10.7553 1.0036 21 14 9.4084 12.3706 0.2460 22 1 10.8744 12.1588 0.1403 23 1 8.8640 12.7401 -1.0854 24 1 9.1350 13.4637 1.2132 25 6 9.4596 7.2817 1.6421 26 6 8.8798 6.0475 1.6282 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 3.7170 3.3990 0.8887 37 1 3.7163 3.3985 -0.8914 38 1 5.8540 1.2183 -1.3442 39 1 7.2039 2.3783 -1.3590 40 1 4.4059 2.8303 -2.4886 41 1 5.9062 2.6225 -3.4235 42 1 5.6802 4.0707 -2.4136 43 1 7.2768 3.9556 1.7312 44 1 5.9518 6.8177 0.0883 45 1 6.9649 9.0415 0.1100 46 1 6.7572 11.5410 0.8194 47 1 10.4414 7.4138 2.0725 48 1 9.4030 5.2018 2.0494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775647618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:10 Heat of formation + Delta-G solvation = -51.419162 kcal Electronic energy + Delta-G solvation = -24313.375142 eV Core-core repulsion = 20945.596434 eV Total energy + Delta-G solvation = -3367.778709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02024 -37.69286 -36.60423 -34.88814 -34.33861 -32.94216 -31.33340 -29.51528 -29.17679 -28.16425 -25.70090 -24.56604 -22.94089 -21.76863 -21.30452 -21.03679 -20.04723 -18.96538 -17.33624 -16.67717 -16.41616 -16.02657 -15.18902 -15.12356 -14.94032 -14.16061 -13.95039 -13.78969 -13.48144 -13.29902 -12.95569 -12.86600 -12.61749 -12.55855 -12.06806 -11.97947 -11.93240 -11.78094 -11.43622 -11.29314 -11.25104 -11.17510 -11.02644 -10.94798 -10.84770 -10.77996 -10.60074 -10.49642 -10.40823 -9.93487 -9.70281 -9.36219 -8.89604 -8.45260 -7.44721 -7.00733 -6.71666 -4.24222 2.62183 2.99534 3.07649 3.13440 3.18740 3.44636 3.79816 3.92248 4.55023 4.62695 4.67680 4.77822 4.87417 4.96113 5.02398 5.15319 5.29717 5.34519 5.45501 5.52058 5.55102 5.60869 5.72144 5.75745 5.77138 5.79771 5.83398 5.93094 5.97251 6.02328 6.12532 6.18431 6.18696 6.25629 6.36495 6.50164 6.60748 6.91923 7.00663 7.12201 7.21174 7.37475 7.67682 7.75197 8.08917 8.11449 8.29379 8.42155 8.70424 8.85679 8.92533 9.08136 10.13197 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.002542 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.950008 B =11013.494386 C =11371.913157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.103 4.103 7 H 0.080 0.920 8 C -0.106 4.106 9 C -0.165 4.165 10 C 0.501 3.499 11 O -0.526 6.526 12 N -0.649 5.649 13 C -0.013 4.013 14 C -0.101 4.101 15 C -0.172 4.172 16 C 0.096 3.904 17 C -0.451 4.451 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.781 5.781 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.221 4.221 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.393 0.607 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.281 0.719 47 H 0.093 0.907 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 -17.434 -1.711 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.146 4.146 6 C -0.124 4.124 7 H 0.098 0.902 8 C -0.144 4.144 9 C -0.222 4.222 10 C 0.288 3.712 11 O -0.403 6.403 12 N -0.290 5.290 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.192 4.192 16 C 0.094 3.906 17 C -0.480 4.480 18 H 0.096 0.904 19 C -0.146 4.146 20 N -0.406 5.406 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.241 4.241 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.226 0.774 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.441 -16.686 -2.263 18.836 hybrid contribution 0.581 0.342 0.279 0.730 sum -7.860 -16.344 -1.983 18.244 Atomic orbital electron populations 1.21786 0.96076 1.01381 1.01859 1.21536 0.95713 0.97140 1.01838 1.21626 0.95530 0.96488 1.02247 1.21637 0.95216 0.96677 1.02051 1.21555 0.92639 0.96944 1.03466 1.21299 0.97404 0.93933 0.99803 0.90201 1.21358 1.00357 0.99220 0.93437 1.22007 1.00378 1.03273 0.96514 1.20509 0.80044 0.90134 0.80482 1.90551 1.57167 1.49095 1.43525 1.43071 1.41335 1.14462 1.30122 1.17324 0.94950 0.83697 1.14539 1.21083 1.00005 0.91488 0.99487 1.21413 0.97689 0.96208 1.03901 1.17708 0.92018 0.92389 0.88524 1.19620 0.96612 0.90640 1.41109 0.90404 1.25994 0.94598 1.01116 0.92849 1.69864 1.06377 1.30769 1.33564 0.86272 0.80850 0.80500 0.79193 1.18327 1.19589 1.19982 1.20430 1.00906 0.93108 1.09644 1.19965 0.93268 0.96807 1.02833 0.92762 0.92981 0.92780 0.92153 0.92178 0.92013 0.91939 0.91649 0.92146 0.91939 0.90142 0.91348 0.91957 0.92618 0.93506 0.89989 0.77399 0.85660 0.84968 0.90831 0.88893 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.03 4.97 -26.73 -0.13 -1.17 16 5 C -0.11 -1.23 4.10 -26.73 -0.11 -1.34 16 6 C -0.10 -1.25 2.56 -91.77 -0.24 -1.49 16 7 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 8 C -0.11 -1.21 5.29 -26.73 -0.14 -1.35 16 9 C -0.16 -2.09 9.02 37.16 0.34 -1.76 16 10 C 0.50 8.68 6.44 -10.98 -0.07 8.61 16 11 O -0.53 -11.09 11.26 5.56 0.06 -11.03 16 12 N -0.65 -11.63 5.33 -9.74 -0.05 -11.68 16 13 C -0.01 -0.29 6.47 -83.57 -0.54 -0.83 16 14 C -0.10 -2.59 8.76 -39.79 -0.35 -2.93 16 15 C -0.17 -4.73 8.76 -39.26 -0.34 -5.08 16 16 C 0.10 2.64 5.67 -106.80 -0.61 2.03 16 17 C -0.45 -12.13 9.05 -37.85 -0.34 -12.47 16 18 H 0.08 2.00 7.93 -52.49 -0.42 1.59 16 19 C 0.07 1.85 5.16 -17.34 -0.09 1.76 16 20 N -0.78 -20.43 10.56 55.55 0.59 -19.84 16 21 Si 0.91 18.80 29.61 -169.99 -5.03 13.77 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.22 -5.47 9.74 -39.26 -0.38 -5.86 16 26 C -0.11 -2.44 9.87 -39.79 -0.39 -2.83 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.03 6.09 -51.93 -0.32 0.71 16 38 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.33 5.77 -51.93 -0.30 1.03 16 43 H 0.39 5.57 8.64 -40.82 -0.35 5.22 16 44 H 0.13 3.24 5.39 -52.49 -0.28 2.96 16 45 H 0.13 3.77 5.55 -52.49 -0.29 3.48 16 46 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 47 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 48 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -29.55 376.40 -10.14 -39.69 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.05 Total: 11.03 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -3.33 Total: -27.60 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.53 Total: -31.53 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.03 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.55 -10.14 -39.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775647618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.734 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds