Wall clock time and date at job start Tue Mar 31 2020 08:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46899 * 2 1 4 4 C 1.53003 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47270 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46839 * 304.99596 * 6 5 4 8 8 C 1.52993 * 109.47481 * 64.99659 * 6 5 4 9 9 C 1.53004 * 109.46882 * 53.55614 * 8 6 5 10 10 C 1.50706 * 109.46930 * 185.00030 * 6 5 4 11 11 O 1.21277 * 119.99995 * 308.80705 * 10 6 5 12 12 N 1.34779 * 119.99891 * 128.81194 * 10 6 5 13 13 C 1.39235 * 119.99643 * 172.12840 * 12 10 6 14 14 C 1.39480 * 119.83624 * 25.86409 * 13 12 10 15 15 C 1.36383 * 120.16648 * 179.72104 * 14 13 12 16 16 C 1.40869 * 119.82461 * 0.57283 * 15 14 13 17 17 C 1.41152 * 120.15725 * 179.67710 * 16 15 14 18 18 H 1.07998 * 120.00006 * 194.21060 * 17 16 15 19 19 C 1.39904 * 120.00621 * 14.21538 * 17 16 15 20 20 N 1.30876 * 119.99507 * 21.98345 * 19 17 16 21 21 Si 1.86795 * 120.00235 * 201.98879 * 19 17 16 22 22 H 1.48496 * 109.47329 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47286 * 119.99781 * 21 19 17 24 24 H 1.48504 * 109.47202 * 239.99335 * 21 19 17 25 25 C 1.40864 * 119.67531 * 359.69974 * 16 15 14 26 26 C 1.36370 * 119.82973 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47288 * 59.99921 * 1 2 3 28 28 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46906 * 300.00094 * 1 2 3 30 30 H 1.09000 * 109.46906 * 239.99906 * 2 1 3 31 31 H 1.08997 * 109.47288 * 120.00079 * 2 1 3 32 32 H 1.08993 * 109.47526 * 59.99865 * 3 2 1 33 33 H 1.09003 * 109.47071 * 299.99407 * 3 2 1 34 34 H 1.09000 * 109.47225 * 59.99710 * 4 3 2 35 35 H 1.09006 * 109.46904 * 299.99611 * 4 3 2 36 36 H 1.09000 * 109.47180 * 59.99747 * 5 4 3 37 37 H 1.09006 * 109.46892 * 299.99683 * 5 4 3 38 38 H 1.08996 * 109.47169 * 293.56121 * 8 6 5 39 39 H 1.08993 * 109.47276 * 173.55286 * 8 6 5 40 40 H 1.08997 * 109.47095 * 295.41700 * 9 8 6 41 41 H 1.09006 * 109.46888 * 175.42157 * 9 8 6 42 42 H 1.08997 * 109.47457 * 55.41883 * 9 8 6 43 43 H 0.96994 * 120.00135 * 352.12481 * 12 10 6 44 44 H 1.07994 * 119.91705 * 359.97438 * 14 13 12 45 45 H 1.07998 * 120.08412 * 180.25356 * 15 14 13 46 46 H 0.97005 * 120.00006 * 180.02562 * 20 19 17 47 47 H 1.08007 * 120.08593 * 179.97438 * 25 16 15 48 48 H 1.08004 * 119.91500 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 1 5.9733 2.2959 0.8409 8 6 6.1201 2.2747 -1.3082 9 6 5.4822 3.0019 -2.4937 10 6 6.1124 4.3004 0.1219 11 8 5.6939 5.1595 -0.6248 12 7 7.0267 4.6116 1.0620 13 6 7.6121 5.8749 1.0724 14 6 6.9308 6.9601 0.5215 15 6 7.4955 8.2014 0.5332 16 6 8.7753 8.3837 1.0928 17 6 9.3692 9.6641 1.1025 18 1 10.4230 9.7690 1.3147 19 6 8.5930 10.7974 0.8373 20 7 7.2955 10.7553 1.0036 21 14 9.4084 12.3706 0.2460 22 1 10.8744 12.1588 0.1403 23 1 8.8640 12.7401 -1.0854 24 1 9.1350 13.4637 1.2132 25 6 9.4596 7.2817 1.6421 26 6 8.8798 6.0475 1.6282 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 3.7170 3.3990 0.8887 37 1 3.7163 3.3985 -0.8914 38 1 5.8540 1.2183 -1.3442 39 1 7.2039 2.3783 -1.3590 40 1 4.4059 2.8303 -2.4886 41 1 5.9062 2.6225 -3.4235 42 1 5.6802 4.0707 -2.4136 43 1 7.2768 3.9556 1.7312 44 1 5.9518 6.8177 0.0883 45 1 6.9649 9.0415 0.1100 46 1 6.7572 11.5410 0.8194 47 1 10.4414 7.4138 2.0725 48 1 9.4030 5.2018 2.0494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775647618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:09 Heat of formation + Delta-G solvation = -65.863572 kcal Electronic energy + Delta-G solvation = -24314.001499 eV Core-core repulsion = 20945.596434 eV Total energy + Delta-G solvation = -3368.405065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46291 -39.32383 -37.71951 -36.23875 -35.57648 -34.72535 -32.09990 -31.40848 -30.97346 -29.27130 -27.06953 -25.89175 -23.94004 -23.28307 -22.88944 -21.95095 -21.44021 -20.25337 -19.27964 -18.15804 -17.83955 -16.97854 -16.87972 -16.39248 -15.87465 -15.73474 -15.34540 -14.82127 -14.63890 -14.62193 -14.19667 -14.10378 -13.96041 -13.77138 -13.58370 -13.51410 -13.14613 -12.89673 -12.76129 -12.74981 -12.68515 -12.39822 -12.29209 -11.99751 -11.89682 -11.74284 -11.63571 -11.51395 -11.47831 -11.31699 -11.24637 -11.12817 -10.73843 -10.05154 -9.41690 -8.89400 -8.60272 -6.23655 0.84433 1.16879 1.35968 1.44484 1.53081 1.87645 2.18275 2.43027 2.72299 3.71228 3.75676 3.79367 3.96799 4.12394 4.14812 4.25771 4.41024 4.43685 4.45774 4.54258 4.58581 4.63352 4.73384 4.77802 4.86831 4.95058 4.99864 5.04236 5.04964 5.10270 5.14520 5.18483 5.23888 5.24326 5.27946 5.31136 5.34368 5.41980 5.48417 5.53102 5.54633 5.63456 5.72336 5.90048 6.12346 6.17972 6.35345 6.71952 6.84212 6.92997 7.04505 7.49912 8.26612 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.002542 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.950008 B =11013.494386 C =11371.913157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.105 4.105 6 C -0.091 4.091 7 H 0.116 0.884 8 C -0.103 4.103 9 C -0.164 4.164 10 C 0.495 3.505 11 O -0.567 6.567 12 N -0.644 5.644 13 C 0.001 3.999 14 C -0.118 4.118 15 C -0.201 4.201 16 C 0.063 3.937 17 C -0.487 4.487 18 H 0.080 0.920 19 C 0.029 3.971 20 N -0.816 5.816 21 Si 0.985 3.015 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.230 4.230 26 C -0.104 4.104 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.416 0.584 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.288 0.712 47 H 0.108 0.892 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -20.242 -1.237 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.112 4.112 7 H 0.134 0.866 8 C -0.141 4.141 9 C -0.221 4.221 10 C 0.285 3.715 11 O -0.446 6.446 12 N -0.287 5.287 13 C -0.093 4.093 14 C -0.138 4.138 15 C -0.221 4.221 16 C 0.060 3.940 17 C -0.516 4.516 18 H 0.098 0.902 19 C -0.187 4.187 20 N -0.442 5.442 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.250 4.250 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.253 0.747 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.099 0.901 47 H 0.126 0.874 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.786 -19.546 -1.764 21.114 hybrid contribution 0.279 1.075 0.121 1.117 sum -7.507 -18.471 -1.643 20.006 Atomic orbital electron populations 1.21802 0.96029 1.01867 1.01605 1.21515 0.95790 0.96218 1.02416 1.21620 0.95516 0.97271 1.01577 1.21580 0.95175 0.94548 1.03321 1.21527 0.92034 0.98755 1.02016 1.21360 0.97707 0.90330 1.01822 0.86602 1.21414 0.99902 1.00856 0.91887 1.21965 1.01299 1.00770 0.98085 1.21597 0.78762 0.92024 0.79135 1.90550 1.58205 1.51048 1.44814 1.43049 1.41348 1.13102 1.31238 1.17401 0.94876 0.84911 1.12122 1.21137 1.00024 0.92162 1.00517 1.21328 0.98572 0.96475 1.05721 1.18063 0.92407 0.93860 0.89679 1.19882 0.96970 0.91484 1.43271 0.90155 1.26927 0.95031 1.04477 0.92240 1.69927 1.07864 1.32156 1.34217 0.85118 0.79731 0.75942 0.78675 1.17760 1.19184 1.18708 1.20719 1.01540 0.93465 1.09315 1.20338 0.92946 0.97392 1.01709 0.93082 0.92130 0.93042 0.91586 0.91510 0.92665 0.92797 0.90542 0.90530 0.93053 0.92173 0.87667 0.92363 0.91810 0.92305 0.94184 0.74736 0.86733 0.87166 0.90112 0.87436 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.47 5.93 30.59 0.18 -1.29 16 3 C -0.12 -1.81 5.21 30.59 0.16 -1.65 16 4 C -0.11 -1.56 4.97 30.59 0.15 -1.40 16 5 C -0.11 -2.22 4.10 30.59 0.13 -2.09 16 6 C -0.09 -1.98 2.56 -11.54 -0.03 -2.01 16 7 H 0.12 1.75 7.94 -2.39 -0.02 1.73 16 8 C -0.10 -2.04 5.29 30.59 0.16 -1.88 16 9 C -0.16 -4.01 9.02 71.98 0.65 -3.36 16 10 C 0.50 16.75 6.44 87.66 0.56 17.31 16 11 O -0.57 -24.65 11.26 -3.02 -0.03 -24.69 16 12 N -0.64 -21.96 5.33 -303.11 -1.62 -23.57 16 13 C 0.00 0.04 6.47 38.57 0.25 0.28 16 14 C -0.12 -6.32 8.76 22.14 0.19 -6.13 16 15 C -0.20 -11.67 8.76 22.48 0.20 -11.47 16 16 C 0.06 3.55 5.67 -21.28 -0.12 3.43 16 17 C -0.49 -27.15 9.05 23.39 0.21 -26.94 16 18 H 0.08 4.25 7.93 -2.91 -0.02 4.22 16 19 C 0.03 1.49 5.16 85.24 0.44 1.93 16 20 N -0.82 -44.68 10.56 21.82 0.23 -44.45 16 21 Si 0.99 39.35 29.61 68.60 2.03 41.38 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 C -0.23 -11.43 9.74 22.48 0.22 -11.21 16 26 C -0.10 -4.50 9.87 22.13 0.22 -4.28 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.96 6.71 -2.39 -0.02 0.94 16 35 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.52 6.09 -2.38 -0.01 1.50 16 38 H 0.11 1.40 6.89 -2.39 -0.02 1.38 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.42 6.50 -2.39 -0.02 1.40 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.04 1.33 5.77 -2.39 -0.01 1.31 16 43 H 0.42 10.34 8.64 -92.71 -0.80 9.54 16 44 H 0.12 6.29 5.39 -2.92 -0.02 6.28 16 45 H 0.11 6.77 5.55 -2.91 -0.02 6.75 16 46 H 0.29 14.18 8.30 -92.70 -0.77 13.41 16 47 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 48 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -68.96 376.40 5.04 -63.92 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.14 Total: 39.32 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 4.29 Total: -51.91 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.39 Total: -68.02 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.03 Total: -24.69 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -68.96 5.04 -63.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775647618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.947 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds