Wall clock time and date at job start Tue Mar 31 2020 08:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 C 1.53009 * 109.46747 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46537 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46537 * 179.97438 * 5 4 3 7 7 H 1.08991 * 109.46881 * 305.00162 * 6 5 4 8 8 C 1.53001 * 109.46765 * 184.99808 * 6 5 4 9 9 N 1.46499 * 109.46777 * 65.00257 * 6 5 4 10 10 C 1.34784 * 119.99630 * 204.99636 * 9 6 5 11 11 O 1.21281 * 119.99942 * 0.02562 * 10 9 6 12 12 C 1.50701 * 119.99890 * 180.02562 * 10 9 6 13 13 C 1.50697 * 109.47024 * 180.02562 * 12 10 9 14 14 C 1.37635 * 120.13029 * 265.00398 * 13 12 10 15 15 C 1.38616 * 120.25180 * 180.29925 * 14 13 12 16 16 C 1.38657 * 120.49769 * 359.43991 * 15 14 13 17 17 C 1.37599 * 120.24996 * 0.55619 * 16 15 14 18 18 C 1.40698 * 120.12726 * 85.02044 * 13 12 10 19 19 C 1.41401 * 120.24306 * 359.95711 * 18 13 12 20 20 H 1.07996 * 120.00140 * 329.78968 * 19 18 13 21 21 C 1.39943 * 119.99611 * 149.79577 * 19 18 13 22 22 N 1.30828 * 120.00177 * 162.08912 * 21 19 18 23 23 Si 1.86803 * 120.00186 * 342.08044 * 21 19 18 24 24 H 1.48499 * 109.47049 * 95.39710 * 23 21 19 25 25 H 1.48502 * 109.46957 * 215.39592 * 23 21 19 26 26 H 1.48500 * 109.46884 * 335.39299 * 23 21 19 27 27 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 300.00311 * 1 2 3 29 29 H 1.08999 * 109.46714 * 60.00436 * 1 2 3 30 30 H 1.09000 * 109.46999 * 239.99689 * 2 1 3 31 31 H 1.09001 * 109.46659 * 120.00340 * 2 1 3 32 32 H 1.08998 * 109.47083 * 60.00342 * 3 2 1 33 33 H 1.08999 * 109.46991 * 299.99394 * 3 2 1 34 34 H 1.08998 * 109.46933 * 60.00393 * 4 3 2 35 35 H 1.08993 * 109.46937 * 299.99981 * 4 3 2 36 36 H 1.08998 * 109.47071 * 60.00621 * 5 4 3 37 37 H 1.08999 * 109.47212 * 299.99545 * 5 4 3 38 38 H 1.09007 * 109.46894 * 60.00302 * 8 6 5 39 39 H 1.08999 * 109.47015 * 179.97438 * 8 6 5 40 40 H 1.08990 * 109.47505 * 300.00359 * 8 6 5 41 41 H 0.97000 * 120.00799 * 25.00053 * 9 6 5 42 42 H 1.08999 * 109.47141 * 60.00010 * 12 10 9 43 43 H 1.09003 * 109.46955 * 300.00132 * 12 10 9 44 44 H 1.08001 * 119.87405 * 0.02562 * 14 13 12 45 45 H 1.07997 * 119.74655 * 179.69995 * 15 14 13 46 46 H 1.07996 * 119.87456 * 180.30205 * 16 15 14 47 47 H 1.07999 * 120.12771 * 179.75037 * 17 16 15 48 48 H 0.96989 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6102 2.8848 0.0013 7 1 5.9727 2.2960 0.8438 8 6 6.1201 4.3219 0.1263 9 7 6.0994 2.3002 -1.2497 10 6 7.3215 1.7335 -1.2961 11 8 8.0158 1.7073 -0.3020 12 6 7.8251 1.1326 -2.5831 13 6 9.2061 0.5692 -2.3678 14 6 10.3157 1.3251 -2.6707 15 6 11.5871 0.8070 -2.4794 16 6 11.7567 -0.4718 -1.9710 17 6 10.6619 -1.2454 -1.6612 18 6 9.3662 -0.7319 -1.8567 19 6 8.2336 -1.5176 -1.5414 20 1 7.3196 -1.0420 -1.2178 21 6 8.2972 -2.9114 -1.6485 22 7 7.4081 -3.6554 -1.0422 23 14 9.6516 -3.7099 -2.6573 24 1 10.7754 -4.0902 -1.7642 25 1 9.1195 -4.9235 -3.3276 26 1 10.1364 -2.7507 -3.6821 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.9338 0.9284 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7172 3.3982 -0.8905 38 1 5.7559 4.7569 1.0572 39 1 7.2101 4.3219 0.1277 40 1 5.7575 4.9107 -0.7161 41 1 5.5440 2.3209 -2.0447 42 1 7.8626 1.9028 -3.3535 43 1 7.1528 0.3350 -2.8991 44 1 10.1952 2.3241 -3.0630 45 1 12.4520 1.4055 -2.7244 46 1 12.7519 -0.8636 -1.8215 47 1 10.7963 -2.2427 -1.2690 48 1 7.4519 -4.6214 -1.1167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776735590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:24 Heat of formation + Delta-G solvation = -60.372313 kcal Electronic energy + Delta-G solvation = -24891.975946 eV Core-core repulsion = 21523.808999 eV Total energy + Delta-G solvation = -3368.166947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.41470 -37.77700 -36.65271 -34.93970 -33.53016 -32.14850 -31.50188 -30.27874 -29.99433 -26.83876 -26.41352 -24.78670 -22.60087 -21.43200 -21.00799 -20.95110 -20.17787 -19.31445 -17.29165 -16.44808 -16.14614 -15.66373 -15.35019 -14.87970 -14.33354 -14.09582 -13.98850 -13.76837 -13.60037 -13.50091 -13.07224 -12.94800 -12.65741 -12.39070 -12.13908 -12.06005 -11.96963 -11.78982 -11.63487 -11.35934 -11.18948 -11.01144 -10.92961 -10.76616 -10.74083 -10.67247 -10.50243 -10.35451 -10.20048 -9.65618 -9.50484 -9.09152 -9.06479 -8.60126 -7.53690 -7.43805 -6.88141 -4.41668 2.62535 2.77464 3.16336 3.24265 3.36261 3.42796 3.74365 4.03574 4.56591 4.58251 4.87004 4.93869 5.11097 5.16693 5.20868 5.40121 5.43385 5.55693 5.57502 5.62803 5.69862 5.74655 5.80849 5.83820 5.91040 5.92819 5.97741 6.01726 6.03862 6.14691 6.20546 6.22928 6.26110 6.32132 6.35298 6.38039 6.43928 6.65137 6.78176 6.96791 7.01389 7.26691 7.49388 7.72394 7.80623 7.96642 8.06063 8.20864 8.42385 8.74888 8.88617 8.96268 10.14090 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004377 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.648530 B = 6395.285725 C = 8335.063962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.123 4.123 5 C -0.123 4.123 6 C 0.141 3.859 7 H 0.085 0.915 8 C -0.161 4.161 9 N -0.737 5.737 10 C 0.517 3.483 11 O -0.522 6.522 12 C -0.076 4.076 13 C -0.164 4.164 14 C -0.070 4.070 15 C -0.242 4.242 16 C -0.081 4.081 17 C -0.234 4.234 18 C 0.110 3.890 19 C -0.443 4.443 20 H 0.089 0.911 21 C 0.085 3.915 22 N -0.811 5.811 23 Si 0.909 3.091 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.394 0.606 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 9.633 -1.438 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.154 4.154 4 C -0.160 4.160 5 C -0.161 4.161 6 C 0.036 3.964 7 H 0.103 0.897 8 C -0.220 4.220 9 N -0.391 5.391 10 C 0.304 3.696 11 O -0.396 6.396 12 C -0.115 4.115 13 C -0.165 4.165 14 C -0.089 4.089 15 C -0.262 4.262 16 C -0.099 4.099 17 C -0.253 4.253 18 C 0.107 3.893 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.133 4.133 22 N -0.435 5.435 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.167 1.167 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.227 0.773 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.943 9.371 -0.607 13.676 hybrid contribution 0.259 -0.506 -0.606 0.831 sum -9.683 8.865 -1.212 13.184 Atomic orbital electron populations 1.21773 0.96231 1.01450 1.01413 1.21555 0.95435 0.97082 1.02541 1.21600 0.95619 0.96664 1.01512 1.21629 0.94845 0.96375 1.03199 1.21877 0.94281 0.97513 1.02402 1.20864 0.92944 0.94008 0.88598 0.89656 1.22167 1.02240 0.96322 1.01233 1.46169 1.18557 1.61599 1.12821 1.21057 0.80446 0.76700 0.91389 1.90679 1.56064 1.56230 1.36639 1.20305 0.97218 1.00055 0.93949 1.19075 0.91610 0.96805 1.09052 1.20428 0.92763 0.96823 0.98847 1.20327 0.95662 0.97220 1.12963 1.20590 0.96807 0.94549 0.97981 1.20997 0.93102 1.00222 1.10967 1.17486 0.92327 0.91580 0.87947 1.19408 0.99131 0.90433 1.38228 0.89287 1.26143 0.96105 0.97570 0.93514 1.69706 1.33848 1.07092 1.32867 0.86359 0.80406 0.78206 0.81478 1.19798 1.22032 1.16716 0.92895 0.93014 0.92969 0.91777 0.91925 0.92381 0.92309 0.91352 0.91727 0.90962 0.91740 0.92245 0.92049 0.92879 0.77300 0.90494 0.88285 0.89163 0.89066 0.89067 0.88371 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.34 5.93 -26.73 -0.16 -1.50 16 3 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 4 C -0.12 -1.42 5.10 -26.72 -0.14 -1.55 16 5 C -0.12 -1.26 4.75 -26.72 -0.13 -1.39 16 6 C 0.14 1.89 2.58 -67.93 -0.17 1.71 16 7 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 8 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 9 N -0.74 -10.77 4.53 -53.80 -0.24 -11.02 16 10 C 0.52 10.06 7.41 -10.98 -0.08 9.98 16 11 O -0.52 -12.60 15.70 5.56 0.09 -12.52 16 12 C -0.08 -1.45 5.19 -29.04 -0.15 -1.60 16 13 C -0.16 -3.82 4.43 -103.92 -0.46 -4.28 16 14 C -0.07 -1.54 9.66 -39.66 -0.38 -1.93 16 15 C -0.24 -5.33 10.05 -39.29 -0.39 -5.72 16 16 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 17 C -0.23 -5.93 7.17 -38.87 -0.28 -6.21 16 18 C 0.11 2.85 5.10 -106.82 -0.54 2.30 16 19 C -0.44 -12.02 8.55 -37.74 -0.32 -12.35 16 20 H 0.09 2.53 7.00 -52.49 -0.37 2.17 16 21 C 0.09 2.25 5.41 -17.34 -0.09 2.15 16 22 N -0.81 -21.78 13.93 55.55 0.77 -21.01 16 23 Si 0.91 21.11 24.52 -169.99 -4.17 16.94 16 24 H -0.27 -6.23 6.71 56.52 0.38 -5.85 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.24 -5.77 6.86 56.52 0.39 -5.38 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.39 4.59 8.60 -40.82 -0.35 4.24 16 42 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 43 H 0.10 1.90 7.13 -51.93 -0.37 1.53 16 44 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.10 2.49 4.77 -52.49 -0.25 2.24 16 48 H 0.28 6.92 8.30 -40.82 -0.34 6.59 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -30.77 384.52 -9.37 -40.14 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.49 Total: 8.16 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -3.12 Total: -26.49 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.53 Total: -32.02 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.17 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.77 -9.37 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.233 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds