Wall clock time and date at job start Tue Mar 31 2020 08:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 C 1.53009 * 109.46747 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46537 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46537 * 179.97438 * 5 4 3 7 7 H 1.08991 * 109.46881 * 305.00162 * 6 5 4 8 8 C 1.53001 * 109.46765 * 184.99808 * 6 5 4 9 9 N 1.46499 * 109.46777 * 65.00257 * 6 5 4 10 10 C 1.34784 * 119.99630 * 204.99636 * 9 6 5 11 11 O 1.21281 * 119.99942 * 0.02562 * 10 9 6 12 12 C 1.50701 * 119.99890 * 180.02562 * 10 9 6 13 13 C 1.50697 * 109.47024 * 180.02562 * 12 10 9 14 14 C 1.37635 * 120.13029 * 265.00398 * 13 12 10 15 15 C 1.38616 * 120.25180 * 180.29925 * 14 13 12 16 16 C 1.38657 * 120.49769 * 359.43991 * 15 14 13 17 17 C 1.37599 * 120.24996 * 0.55619 * 16 15 14 18 18 C 1.40698 * 120.12726 * 85.02044 * 13 12 10 19 19 C 1.41401 * 120.24306 * 359.95711 * 18 13 12 20 20 H 1.07996 * 120.00140 * 329.78968 * 19 18 13 21 21 C 1.39943 * 119.99611 * 149.79577 * 19 18 13 22 22 N 1.30828 * 120.00177 * 162.08912 * 21 19 18 23 23 Si 1.86803 * 120.00186 * 342.08044 * 21 19 18 24 24 H 1.48499 * 109.47049 * 95.39710 * 23 21 19 25 25 H 1.48502 * 109.46957 * 215.39592 * 23 21 19 26 26 H 1.48500 * 109.46884 * 335.39299 * 23 21 19 27 27 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 300.00311 * 1 2 3 29 29 H 1.08999 * 109.46714 * 60.00436 * 1 2 3 30 30 H 1.09000 * 109.46999 * 239.99689 * 2 1 3 31 31 H 1.09001 * 109.46659 * 120.00340 * 2 1 3 32 32 H 1.08998 * 109.47083 * 60.00342 * 3 2 1 33 33 H 1.08999 * 109.46991 * 299.99394 * 3 2 1 34 34 H 1.08998 * 109.46933 * 60.00393 * 4 3 2 35 35 H 1.08993 * 109.46937 * 299.99981 * 4 3 2 36 36 H 1.08998 * 109.47071 * 60.00621 * 5 4 3 37 37 H 1.08999 * 109.47212 * 299.99545 * 5 4 3 38 38 H 1.09007 * 109.46894 * 60.00302 * 8 6 5 39 39 H 1.08999 * 109.47015 * 179.97438 * 8 6 5 40 40 H 1.08990 * 109.47505 * 300.00359 * 8 6 5 41 41 H 0.97000 * 120.00799 * 25.00053 * 9 6 5 42 42 H 1.08999 * 109.47141 * 60.00010 * 12 10 9 43 43 H 1.09003 * 109.46955 * 300.00132 * 12 10 9 44 44 H 1.08001 * 119.87405 * 0.02562 * 14 13 12 45 45 H 1.07997 * 119.74655 * 179.69995 * 15 14 13 46 46 H 1.07996 * 119.87456 * 180.30205 * 16 15 14 47 47 H 1.07999 * 120.12771 * 179.75037 * 17 16 15 48 48 H 0.96989 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6102 2.8848 0.0013 7 1 5.9727 2.2960 0.8438 8 6 6.1201 4.3219 0.1263 9 7 6.0994 2.3002 -1.2497 10 6 7.3215 1.7335 -1.2961 11 8 8.0158 1.7073 -0.3020 12 6 7.8251 1.1326 -2.5831 13 6 9.2061 0.5692 -2.3678 14 6 10.3157 1.3251 -2.6707 15 6 11.5871 0.8070 -2.4794 16 6 11.7567 -0.4718 -1.9710 17 6 10.6619 -1.2454 -1.6612 18 6 9.3662 -0.7319 -1.8567 19 6 8.2336 -1.5176 -1.5414 20 1 7.3196 -1.0420 -1.2178 21 6 8.2972 -2.9114 -1.6485 22 7 7.4081 -3.6554 -1.0422 23 14 9.6516 -3.7099 -2.6573 24 1 10.7754 -4.0902 -1.7642 25 1 9.1195 -4.9235 -3.3276 26 1 10.1364 -2.7507 -3.6821 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.9338 0.9284 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7172 3.3982 -0.8905 38 1 5.7559 4.7569 1.0572 39 1 7.2101 4.3219 0.1277 40 1 5.7575 4.9107 -0.7161 41 1 5.5440 2.3209 -2.0447 42 1 7.8626 1.9028 -3.3535 43 1 7.1528 0.3350 -2.8991 44 1 10.1952 2.3241 -3.0630 45 1 12.4520 1.4055 -2.7244 46 1 12.7519 -0.8636 -1.8215 47 1 10.7963 -2.2427 -1.2690 48 1 7.4519 -4.6214 -1.1167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776735590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:23 Heat of formation + Delta-G solvation = -77.536815 kcal Electronic energy + Delta-G solvation = -24892.720254 eV Core-core repulsion = 21523.808999 eV Total energy + Delta-G solvation = -3368.911255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92429 -39.45243 -37.83676 -36.00625 -35.47619 -33.70317 -32.78005 -32.14337 -31.10745 -28.48225 -27.28294 -26.65934 -23.66665 -23.17518 -22.38121 -21.83393 -21.46745 -20.96080 -19.23947 -17.90555 -17.63732 -17.08066 -16.52661 -16.47563 -16.03890 -15.47394 -15.43605 -14.98707 -14.80383 -14.77901 -14.50513 -14.42649 -13.90041 -13.82777 -13.73381 -13.41348 -13.13755 -12.93809 -12.83574 -12.68432 -12.67193 -12.54254 -12.48117 -12.05265 -11.98529 -11.80663 -11.70748 -11.52986 -11.37903 -11.36931 -11.28970 -10.96876 -10.69796 -9.93416 -9.39126 -9.27332 -8.85544 -6.43660 0.80910 0.91198 1.26921 1.39666 1.49078 1.88750 2.14199 2.42704 2.66859 3.55811 3.64961 4.00120 4.01445 4.11039 4.21362 4.29150 4.30272 4.32311 4.41825 4.47204 4.49643 4.59927 4.66793 4.74672 4.75823 4.78594 4.85636 4.91994 4.94586 4.96929 5.00948 5.07170 5.08369 5.17526 5.20710 5.26652 5.31959 5.38646 5.39089 5.44874 5.53454 5.68898 5.72720 5.87812 5.96608 6.06476 6.30699 6.46976 6.73626 6.82826 6.92493 7.51304 8.22390 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004377 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.648530 B = 6395.285725 C = 8335.063962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.108 4.108 4 C -0.123 4.123 5 C -0.109 4.109 6 C 0.136 3.864 7 H 0.045 0.955 8 C -0.153 4.153 9 N -0.717 5.717 10 C 0.516 3.484 11 O -0.579 6.579 12 C -0.076 4.076 13 C -0.169 4.169 14 C -0.080 4.080 15 C -0.230 4.230 16 C -0.093 4.093 17 C -0.258 4.258 18 C 0.083 3.917 19 C -0.469 4.469 20 H 0.056 0.944 21 C 0.048 3.952 22 N -0.853 5.853 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.250 1.250 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.077 0.923 41 H 0.411 0.589 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.090 0.910 48 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 12.285 -3.140 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.145 4.145 4 C -0.161 4.161 5 C -0.147 4.147 6 C 0.032 3.968 7 H 0.063 0.937 8 C -0.211 4.211 9 N -0.371 5.371 10 C 0.304 3.696 11 O -0.457 6.457 12 C -0.115 4.115 13 C -0.171 4.171 14 C -0.098 4.098 15 C -0.249 4.249 16 C -0.111 4.111 17 C -0.277 4.277 18 C 0.081 3.919 19 C -0.498 4.498 20 H 0.074 0.926 21 C -0.165 4.165 22 N -0.480 5.480 23 Si 0.787 3.213 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.174 1.174 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.248 0.752 42 H 0.138 0.862 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.038 12.041 -2.335 15.849 hybrid contribution 0.338 -1.148 -0.073 1.199 sum -9.699 10.892 -2.408 14.782 Atomic orbital electron populations 1.21742 0.94597 1.01774 1.02361 1.21587 0.96918 0.97517 1.01121 1.21543 0.93773 0.96290 1.02926 1.21606 0.96514 0.97016 1.00965 1.21817 0.91374 0.96801 1.04706 1.21004 0.95200 0.94200 0.86441 0.93688 1.22086 1.00218 0.95372 1.03416 1.45990 1.17083 1.59878 1.14158 1.21088 0.81405 0.76499 0.90650 1.90653 1.58024 1.58765 1.38289 1.20357 0.95184 1.00981 0.95006 1.19564 0.94199 0.95958 1.07385 1.20900 0.92344 0.98265 0.98325 1.20877 0.97052 0.96803 1.10177 1.20971 0.97482 0.94981 0.97646 1.21149 0.93840 1.00613 1.12101 1.17733 0.92235 0.93023 0.88952 1.19315 0.98728 0.91218 1.40588 0.92560 1.26767 0.97934 0.97713 0.94134 1.69743 1.35752 1.07693 1.34772 0.85528 0.78176 0.77607 0.79986 1.19511 1.20402 1.17401 0.92987 0.92073 0.91932 0.93232 0.93478 0.91060 0.90569 0.93272 0.94479 0.88920 0.88950 0.90239 0.95084 0.90427 0.75232 0.86198 0.88899 0.85578 0.85392 0.86127 0.89237 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.13 -2.80 5.93 30.59 0.18 -2.62 16 3 C -0.11 -1.96 5.21 30.60 0.16 -1.80 16 4 C -0.12 -2.85 5.10 30.60 0.16 -2.70 16 5 C -0.11 -2.03 4.75 30.60 0.15 -1.89 16 6 C 0.14 3.60 2.58 45.00 0.12 3.72 16 7 H 0.04 1.57 7.58 -2.39 -0.02 1.55 16 8 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 9 N -0.72 -20.74 4.53 -442.52 -2.00 -22.74 16 10 C 0.52 20.42 7.41 87.66 0.65 21.07 16 11 O -0.58 -29.09 15.70 -3.03 -0.05 -29.14 16 12 C -0.08 -2.88 5.19 29.10 0.15 -2.73 16 13 C -0.17 -7.83 4.43 -19.41 -0.09 -7.92 16 14 C -0.08 -3.31 9.66 22.22 0.21 -3.10 16 15 C -0.23 -9.35 10.05 22.46 0.23 -9.12 16 16 C -0.09 -4.09 10.02 22.22 0.22 -3.87 16 17 C -0.26 -13.14 7.17 22.73 0.16 -12.98 16 18 C 0.08 4.41 5.10 -21.29 -0.11 4.31 16 19 C -0.47 -26.85 8.55 23.46 0.20 -26.65 16 20 H 0.06 3.47 7.00 -2.91 -0.02 3.45 16 21 C 0.05 2.67 5.41 85.26 0.46 3.13 16 22 N -0.85 -48.22 13.93 21.83 0.30 -47.92 16 23 Si 0.96 44.61 24.52 68.60 1.68 46.29 16 24 H -0.27 -12.19 6.71 99.48 0.67 -11.52 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.25 -11.71 6.86 99.48 0.68 -11.02 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.30 7.75 -2.39 -0.02 1.29 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.41 8.97 8.60 -92.71 -0.80 8.17 16 42 H 0.12 3.42 8.05 -2.39 -0.02 3.41 16 43 H 0.09 3.65 7.13 -2.39 -0.02 3.63 16 44 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 46 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 47 H 0.09 4.61 4.77 -2.91 -0.01 4.60 16 48 H 0.29 14.84 8.30 -92.72 -0.77 14.07 16 Total: -1.00 -71.61 384.52 4.24 -67.37 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.06 Total: 33.79 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 4.25 Total: -47.65 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.70 Total: -70.66 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.68 Total: 46.29 kcal Total: -71.61 4.24 -67.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.165 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds