Wall clock time and date at job start Tue Mar 31 2020 08:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.53006 * 109.47476 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47375 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46966 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47032 * 55.00411 * 6 5 4 8 8 C 1.52997 * 109.46955 * 175.00249 * 6 5 4 9 9 N 1.46499 * 109.47127 * 295.00171 * 6 5 4 10 10 C 1.34778 * 119.99985 * 155.00162 * 9 6 5 11 11 O 1.21279 * 119.99918 * 0.02562 * 10 9 6 12 12 C 1.50696 * 120.00123 * 179.97438 * 10 9 6 13 13 C 1.50699 * 109.47446 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12560 * 264.98189 * 13 12 10 15 15 C 1.38615 * 120.24508 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.50505 * 0.03574 * 15 14 13 17 17 C 1.37602 * 120.24670 * 359.68187 * 16 15 14 18 18 C 1.40697 * 120.13087 * 84.99821 * 13 12 10 19 19 C 1.41400 * 120.24037 * 359.97438 * 18 13 12 20 20 H 1.07995 * 120.00005 * 26.26997 * 19 18 13 21 21 C 1.39948 * 119.99664 * 206.27031 * 19 18 13 22 22 N 1.30820 * 120.00409 * 16.45094 * 21 19 18 23 23 Si 1.86804 * 119.99707 * 196.45301 * 21 19 18 24 24 H 1.48496 * 109.47268 * 265.18600 * 23 21 19 25 25 H 1.48501 * 109.46902 * 25.18601 * 23 21 19 26 26 H 1.48505 * 109.47086 * 145.18489 * 23 21 19 27 27 H 1.08997 * 109.47004 * 60.00234 * 1 2 3 28 28 H 1.09003 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47260 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47477 * 239.99842 * 2 1 3 31 31 H 1.09007 * 109.47455 * 119.99610 * 2 1 3 32 32 H 1.08996 * 109.47428 * 59.99989 * 3 2 1 33 33 H 1.09006 * 109.46941 * 299.99625 * 3 2 1 34 34 H 1.09009 * 109.46461 * 59.99638 * 4 3 2 35 35 H 1.08997 * 109.46839 * 299.99915 * 4 3 2 36 36 H 1.09000 * 109.46845 * 59.99878 * 5 4 3 37 37 H 1.08998 * 109.47098 * 300.00431 * 5 4 3 38 38 H 1.09002 * 109.47447 * 60.00129 * 8 6 5 39 39 H 1.09006 * 109.47521 * 180.02562 * 8 6 5 40 40 H 1.08999 * 109.47037 * 299.99911 * 8 6 5 41 41 H 0.97002 * 120.00021 * 334.99637 * 9 6 5 42 42 H 1.09003 * 109.47096 * 59.99748 * 12 10 9 43 43 H 1.09006 * 109.46769 * 300.00011 * 12 10 9 44 44 H 1.07998 * 119.87799 * 0.02562 * 14 13 12 45 45 H 1.08003 * 119.74331 * 180.02562 * 15 14 13 46 46 H 1.07998 * 119.87893 * 179.97438 * 16 15 14 47 47 H 1.08000 * 120.13026 * 180.30283 * 17 16 15 48 48 H 0.96999 * 120.00009 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 1 5.9732 2.2953 -0.8415 8 6 6.1199 4.3220 -0.1263 9 7 6.0983 2.3019 1.2520 10 6 7.3203 1.7354 1.3001 11 8 8.0158 1.7088 0.3069 12 6 7.8229 1.1360 2.5881 13 6 9.2046 0.5734 2.3750 14 6 9.3689 -0.7598 2.0748 15 6 10.6386 -1.2797 1.8777 16 6 11.7563 -0.4658 1.9810 17 6 11.6154 0.8712 2.2745 18 6 10.3316 1.4088 2.4824 19 6 10.1749 2.7800 2.7902 20 1 9.3097 3.1137 3.3437 21 6 11.1410 3.7045 2.3775 22 7 12.0054 3.3780 1.4514 23 14 11.1963 5.4049 3.1490 24 1 10.4306 6.3567 2.3047 25 1 10.5950 5.3525 4.5059 26 1 12.6072 5.8570 3.2499 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9285 -0.8892 35 1 3.9329 0.9289 0.8909 36 1 3.7162 3.3994 0.8895 37 1 3.7169 3.3984 -0.8904 38 1 5.7566 4.9118 0.7153 39 1 7.2099 4.3221 -0.1268 40 1 5.7565 4.7559 -1.0579 41 1 5.5422 2.3235 2.0465 42 1 7.1503 0.3386 2.9046 43 1 7.8596 1.9071 3.3576 44 1 8.5053 -1.4030 1.9916 45 1 10.7582 -2.3270 1.6421 46 1 12.7409 -0.8816 1.8259 47 1 12.4870 1.5045 2.3496 48 1 12.6748 4.0190 1.1651 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776735597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:27 Heat of formation + Delta-G solvation = -59.510712 kcal Electronic energy + Delta-G solvation = -24778.099091 eV Core-core repulsion = 21409.969507 eV Total energy + Delta-G solvation = -3368.129585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.28995 -37.55038 -36.63605 -34.95991 -33.53470 -32.07762 -31.43678 -29.97552 -29.36773 -26.65258 -26.44164 -24.91646 -22.64580 -21.14714 -21.10396 -20.84874 -20.12066 -19.21500 -17.13563 -16.36147 -16.03817 -15.57920 -15.35583 -14.55969 -14.45328 -14.12516 -14.02121 -13.77845 -13.52948 -13.25326 -12.95393 -12.93332 -12.55023 -12.30507 -12.16110 -11.91859 -11.74585 -11.63984 -11.45311 -11.24609 -11.09573 -11.07812 -11.04823 -10.90410 -10.72099 -10.64308 -10.63186 -10.38877 -10.35563 -9.42497 -9.28720 -9.07795 -8.94411 -8.51520 -7.25213 -7.23318 -6.64248 -4.24942 2.84882 3.03646 3.10151 3.13578 3.31547 3.55723 3.83988 3.98735 4.48184 4.72228 4.74804 4.84154 5.01992 5.07766 5.14197 5.37490 5.49653 5.53736 5.55686 5.62941 5.66344 5.77117 5.81890 5.84450 5.86966 5.88352 5.96238 6.03630 6.06272 6.13414 6.17868 6.26758 6.34553 6.38958 6.45367 6.53000 6.58838 6.83979 7.05023 7.17931 7.35214 7.48817 7.71071 7.97660 8.07697 8.16693 8.19870 8.39296 8.71651 8.98193 9.08143 9.09818 10.30626 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.003711 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.376852 B = 7543.137697 C = 8947.171639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.124 4.124 6 C 0.144 3.856 7 H 0.083 0.917 8 C -0.164 4.164 9 N -0.741 5.741 10 C 0.516 3.484 11 O -0.512 6.512 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.242 4.242 16 C -0.106 4.106 17 C -0.162 4.162 18 C 0.129 3.871 19 C -0.459 4.459 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.790 5.790 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.392 0.608 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 -0.072 -0.346 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.162 4.162 6 C 0.039 3.961 7 H 0.101 0.899 8 C -0.223 4.223 9 N -0.396 5.396 10 C 0.303 3.697 11 O -0.385 6.385 12 C -0.109 4.109 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.261 4.261 16 C -0.125 4.125 17 C -0.182 4.182 18 C 0.127 3.873 19 C -0.488 4.488 20 H 0.092 0.908 21 C -0.139 4.139 22 N -0.415 5.415 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.225 0.775 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.629 0.006 -1.242 16.675 hybrid contribution -0.159 0.915 0.507 1.058 sum -16.788 0.920 -0.735 16.829 Atomic orbital electron populations 1.21780 0.96127 1.01446 1.01633 1.21547 0.95585 0.97165 1.02145 1.21627 0.95664 0.96568 1.01791 1.21614 0.94784 0.96727 1.02684 1.21888 0.94583 0.97194 1.02545 1.20811 0.92514 0.94322 0.88488 0.89919 1.22185 1.02930 0.96118 1.01026 1.46206 1.18710 1.62040 1.12626 1.21042 0.80002 0.77234 0.91420 1.90699 1.54953 1.56114 1.36739 1.20252 0.95941 0.99915 0.94824 1.18992 0.92138 0.93814 1.13123 1.20287 0.95468 0.94373 0.99873 1.20289 0.93099 0.97757 1.14953 1.20669 0.96250 0.94697 1.00873 1.21276 0.97887 0.93231 1.05764 1.17330 0.90300 0.92411 0.87266 1.19425 1.06072 0.91676 1.31657 0.90790 1.25834 0.94355 1.00568 0.93177 1.69843 1.14321 1.36349 1.21007 0.86436 0.78389 0.82105 0.80586 1.19756 1.18500 1.20103 0.92898 0.92927 0.92853 0.92083 0.91991 0.92158 0.92230 0.91957 0.91603 0.91653 0.90945 0.92863 0.91480 0.92457 0.77526 0.90976 0.89193 0.89845 0.89758 0.89670 0.86607 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 4 C -0.12 -1.17 5.10 -26.73 -0.14 -1.30 16 5 C -0.12 -1.23 4.75 -26.73 -0.13 -1.36 16 6 C 0.14 1.98 2.57 -67.93 -0.17 1.80 16 7 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 8 C -0.16 -2.34 9.48 37.16 0.35 -1.98 16 9 N -0.74 -11.09 4.53 -53.81 -0.24 -11.33 16 10 C 0.52 10.41 7.79 -10.99 -0.09 10.32 16 11 O -0.51 -13.01 15.70 5.56 0.09 -12.92 16 12 C -0.07 -1.37 5.35 -29.04 -0.16 -1.53 16 13 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.74 10.05 -39.29 -0.39 -6.13 16 16 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 17 C -0.16 -4.40 8.68 -38.87 -0.34 -4.74 16 18 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 19 C -0.46 -12.16 8.46 -37.74 -0.32 -12.48 16 20 H 0.07 1.85 6.37 -52.49 -0.33 1.51 16 21 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 22 N -0.79 -21.39 10.97 55.55 0.61 -20.78 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.68 7.75 -51.93 -0.40 0.27 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 4.63 8.60 -40.82 -0.35 4.28 16 42 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 43 H 0.09 1.71 6.49 -51.93 -0.34 1.37 16 44 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 45 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 47 H 0.12 3.22 6.22 -52.49 -0.33 2.90 16 48 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -31.37 389.63 -10.40 -41.77 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.46 Total: 9.02 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -3.23 Total: -25.71 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.37 Total: -32.11 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.37 -10.40 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.743 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds